mRNA_L-elsbetiae_contig13467.2660.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13467.2660.1
Unique NamemRNA_L-elsbetiae_contig13467.2660.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13467.2660.1 vs. uniprot
Match: A0A6H5JAC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAC9_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 2.190e-61
Identity = 94/111 (84.68%), Postives = 100/111 (90.09%), Query Frame = 1 
Query:   97 TRRGINLSLVSTMSPWLAVYLPIPLGLLDGTWSLHCAKRGHIRHHTTGSCASRGGMCGTAWGCSGPSCALNLGLDLGLLITAVLAALPAGASAQGCGYDCFALLCFPCAPG 429
            T RGI  SL S +SPWLA+YLPIPLG L+G WS+HCAK GHIRHH+TGSCASRGGMCGTAWGCSGPSCALNLGLDLGLLITAVLAALPAGASA+GC Y CF LLCFPCAPG
Sbjct:  185 TWRGIPFSLFSALSPWLAIYLPIPLGFLNGGWSVHCAKSGHIRHHSTGSCASRGGMCGTAWGCSGPSCALNLGLDLGLLITAVLAALPAGASARGCDYSCFWLLCFPCAPG 295
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13467.2660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAC9_9PHAE2.190e-6184.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13467contigL-elsbetiae_contig13467:1625..2408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_003750.1
Exons2
Model size431
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.8282723-CDS-L-elsbetiae_contig13467:1624..17401622815517.8282723-CDS-L-elsbetiae_contig13467:1624..1740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13467 1625..1740 -
1691682936.9815907-CDS-L-elsbetiae_contig13467:1624..17401691682936.9815907-CDS-L-elsbetiae_contig13467:1624..1740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13467 1625..1740 -
1622815517.8444173-CDS-L-elsbetiae_contig13467:2095..24081622815517.8444173-CDS-L-elsbetiae_contig13467:2095..2408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13467 2096..2408 -
1691682936.9923007-CDS-L-elsbetiae_contig13467:2095..24081691682936.9923007-CDS-L-elsbetiae_contig13467:2095..2408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13467 2096..2408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13467.2660.1prot_L-elsbetiae_contig13467.2660.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13467 1625..2408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13467.2660.1

>prot_L-elsbetiae_contig13467.2660.1 ID=prot_L-elsbetiae_contig13467.2660.1|Name=mRNA_L-elsbetiae_contig13467.2660.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
RRYSRPVPRPTTRCKPPLLLLKFVPFHSIDNKTRRGINLSLVSTMSPWLA
VYLPIPLGLLDGTWSLHCAKRGHIRHHTTGSCASRGGMCGTAWGCSGPSC
ALNLGLDLGLLITAVLAALPAGASAQGCGYDCFALLCFPCAPG
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mRNA from alignment at L-elsbetiae_contig13467:1625..2408-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13467.2660.1 ID=mRNA_L-elsbetiae_contig13467.2660.1|Name=mRNA_L-elsbetiae_contig13467.2660.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=784bp|location=Sequence derived from alignment at L-elsbetiae_contig13467:1625..2408- (Laminarionema elsbetiae ELsaHSoW15)
CGCCGTTACTCCCGCCCAGTGCCACGACCCACGACCCGTTGCAAACCGCC
ACTACTTCTCCTCAAATTCGTTCCGTTTCATTCTATCGACAACAAAACCA
GGCGAGGCATCAACTTGTCCCTGGTTTCCACGATGTCGCCCTGGTTGGCG
GTCTACCTTCCGATCCCCCTCGGCCTCCTGGACGGCACTTGGTCTCTCCA
CTGCGCGAAACGTGGACACATCCGGCACCACACTACCGGATCTTGCGCCT
CACGGGGAGGGATGTGCGGTACGGCTTGGGGGTGCTCGGGTCCGTCTTGT
GCCCTTAACCTAGGTGAGTCACGCGGCAGTACCTAGTCTATGGAATATAC
TGGTGCAGGTACTTCTATCTGTTGCATCAGATCCACAGGGTACATATGTA
GTTGTGCGTTTGTTTGCTTTGTGAAACCCTCCGCAAGAGAAGAGTATGAG
AGGGGGCATATTTTTCACCCGAGGATCGACTCGGAAATGACGAAACCTCA
TGGACTCCAACTGCGATAGTAGTGTTGAACGTATGAAAGACCTGGTCAAC
TTGCTTTAAGACGATCGGTTTGGCGGTATTTCTCTGCCGATGAACTGCGC
GTGCACATTAGCACGTTCTTGCTGTAACCCTGCTCACCATCGCCATCAAA
TACTGTACCACGAACCAGGCCTAGACCTCGGTTTGCTGATCACAGCGGTG
CTGGCGGCTTTACCCGCTGGAGCATCTGCGCAGGGGTGCGGATACGACTG
CTTCGCGCTGCTGTGCTTTCCTTGCGCACCCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13467:1625..2408-

>mRNA_L-elsbetiae_contig13467.2660.1 ID=mRNA_L-elsbetiae_contig13467.2660.1|Name=mRNA_L-elsbetiae_contig13467.2660.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig13467:1625..2408- (Laminarionema elsbetiae ELsaHSoW15)
CGCCGTTACTCCCGCCCAGTGCCACGACCCACGACCCGTTGCAAACCGCC
ACTACTTCTCCTCAAATTCGTTCCGTTTCATTCTATCGACAACAAAACCA
GGCGAGGCATCAACTTGTCCCTGGTTTCCACGATGTCGCCCTGGTTGGCG
GTCTACCTTCCGATCCCCCTCGGCCTCCTGGACGGCACTTGGTCTCTCCA
CTGCGCGAAACGTGGACACATCCGGCACCACACTACCGGATCTTGCGCCT
CACGGGGAGGGATGTGCGGTACGGCTTGGGGGTGCTCGGGTCCGTCTTGT
GCCCTTAACCTAGCGCCGTTACTCCCGCCCAGTGCCACGACCCACGACCC
GTTGCAAACCGCCACTACTTCTCCTCAAATTCGTTCCGTTTCATTCTATC
GACAACAAAACCAGGCGAGGCATCAACTTGTCCCTGGTTTCCACGATGTC
GCCCTGGTTGGCGGTCTACCTTCCGATCCCCCTCGGCCTCCTGGACGGCA
CTTGGTCTCTCCACTGCGCGAAACGTGGACACATCCGGCACCACACTACC
GGATCTTGCGCCTCACGGGGAGGGATGTGCGGTACGGCTTGGGGGTGCTC
GGGTCCGTCTTGTGCCCTTAACCTAGGCCTAGACCTCGGTTTGCTGATCA
CAGCGGTGCTGGCGGCTTTACCCGCTGGAGCATCTGCGCAGGGGTGCGGA
TACGACTGCTTCGCGCTGCTGTGCTTTCCTTGCGCACCCGGCGCCTAGAC
CTCGGTTTGCTGATCACAGCGGTGCTGGCGGCTTTACCCGCTGGAGCATC
TGCGCAGGGGTGCGGATACGACTGCTTCGCGCTGCTGTGCTTTCCTTGCG
CACCCGGC
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