mRNA_L-elsbetiae_contig1337.2599.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1337.2599.1
Unique NamemRNA_L-elsbetiae_contig1337.2599.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1337.2599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1337contigL-elsbetiae_contig1337:3191..5139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size382
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1337.2599.1prot_L-elsbetiae_contig1337.2599.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1337 3344..5120 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.100456-UTR-L-elsbetiae_contig1337:3190..33431622815510.100456-UTR-L-elsbetiae_contig1337:3190..3343Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1337 3191..3343 -
1691682933.6739786-UTR-L-elsbetiae_contig1337:3190..33431691682933.6739786-UTR-L-elsbetiae_contig1337:3190..3343Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1337 3191..3343 -
1622815510.1335213-UTR-L-elsbetiae_contig1337:5120..51391622815510.1335213-UTR-L-elsbetiae_contig1337:5120..5139Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1337 5121..5139 -
1691682933.7079127-UTR-L-elsbetiae_contig1337:5120..51391691682933.7079127-UTR-L-elsbetiae_contig1337:5120..5139Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1337 5121..5139 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.1116488-CDS-L-elsbetiae_contig1337:3343..34641622815510.1116488-CDS-L-elsbetiae_contig1337:3343..3464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1337 3344..3464 -
1691682933.6852643-CDS-L-elsbetiae_contig1337:3343..34641691682933.6852643-CDS-L-elsbetiae_contig1337:3343..3464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1337 3344..3464 -
1622815510.121239-CDS-L-elsbetiae_contig1337:5031..51201622815510.121239-CDS-L-elsbetiae_contig1337:5031..5120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1337 5032..5120 -
1691682933.6943252-CDS-L-elsbetiae_contig1337:5031..51201691682933.6943252-CDS-L-elsbetiae_contig1337:5031..5120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1337 5032..5120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1337.2599.1

>prot_L-elsbetiae_contig1337.2599.1 ID=prot_L-elsbetiae_contig1337.2599.1|Name=mRNA_L-elsbetiae_contig1337.2599.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp
MHLSWNPPSRLTAVSCFILLDTVVFAGCARSFRTGAQHLMVAAAKRQPAV
ALVAATRTAGGHPNRRRWR*
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mRNA from alignment at L-elsbetiae_contig1337:3191..5139-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1337.2599.1 ID=mRNA_L-elsbetiae_contig1337.2599.1|Name=mRNA_L-elsbetiae_contig1337.2599.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1949bp|location=Sequence derived from alignment at L-elsbetiae_contig1337:3191..5139- (Laminarionema elsbetiae ELsaHSoW15)
CCAATAACACTGCTAATATATGCACTTGAGCTGGAATCCTCCGAGCCGAT
TGACTGCCGTGTCATGCTTCATACTGCTGGATACTGTAGTATTTGCTGGG
TGCGCTCGGTGAGTGGGCGGAGAAGTAAGAAACCCCCCAATACACGTGCG
CCCGTTTGAACAAGCGATGTCGTTGTCTTGAAAAATGACTCGCGGATTCG
TTTTGTATGCCTTGGATGAGTCGAGTCGAATGGGGCGACGGGGGCTCTGC
TCTGGAGCCAATAAGGTGCACGCTGCGTGTGTCCATCAATCGAGTTGGAG
CAAAGGCCTCGCAGTTCCTGCTGCTGGCACAGGCGACTTTAGTTGTCTTG
AAAAATGAGTTGCGAATTCGTTGTCTTGAAGAATGACTCGCGAATTCGTT
GCCTTTAGTTTCAGAGCTTTCAAACCGTCCCATCATTGACCACGGTTCAG
CACTCTGGCGGAAGATGCCCTCGTGGCAAGGAGCCCATCGAGCACTGGAA
ATAAATGTGAAGAAGAAAACAATAATAGAAAAAAATAATCGAATGGGGTT
TACGGTTTACGAGAGCTACAATATAGATGCTCTCGAGCCCGTAGGATGCA
CACGTCGTGTGTTGATCAAAGGAATTGGGCGCAAACGCCTCGGTACTTCG
TGCGCTGTACTTGGTGAGGCTGTTCGAAGAAAGCATATCTTACGCGACGA
AGCAAAGTAAGTTATTTATGTATGTAGATATATTGTATGTAGATATGTCT
GATGCAAACTGCGTGACACGCGCCTCACGGGTACGATGAGATGTCTACAT
TATGTATGTGCGCGCTAGTAGCAGCATTAGCACATACACTTGGCTGCGGT
AGTAGCAGCATTAGCAACATCTGTCGTAAAAGTAGCAGGTTGTGTCAGAA
TCGATCTTCGGGAACAATGTACATATGTACATATGGACAGAACTGTACTT
GTGCCCACAGGATATATCTACACAAAACACTGGTACAAGTAGAAAAGGAA
GAAACACACACAACGCTGTGTTTACTACACGCAGCGACCGAGAACGGTGC
GATGCCCGTGAATTTTCTTGGGGTCCTAAACATGCGAGCACTATGTAGTG
AATGTGTGGGTACCATAAAGAGGAGAAAAACAAAAAAAGGAATTATAATT
AATGTAAGAAAAGCTTATTGTGCAGGCAGATCTGACGAAAATAATGTCAC
GCCTCAAGTACACGTCAGACGCCGGAGGTAGACTATTGAGTCTAAACCAG
GTGGGCTTATTATCCTCCAGCGTTGAATGCACATAGATGCATCTTCGGAC
GAAAGAAGGAGGGGCTTGCCACTAAATATCGGGTTGTGCGTGTGCGGGAG
ATCGCAAAGGTCGATGTCTTCCCCCCCCTGTTGGTCGGGGCCGCTAGGGG
GTGTCGCCCTATCCATCGGAAAAAAACTTCGCCGGAGCTTCCCGAAAGCA
AAGGAGAGTTACTGCACAGATGGCGTTGCATGGGTCCCATAGCTCTCACA
ACACAACGCCACCAAACTAACAACATACGATCTACAGAGCTACACCGCCG
TTCGCTGCCTTCCAGCTGTCGTGCCCCCAAACCATGCTTACATTCCCGTA
GATAACTACCATAGATACATTTCGTTTAGGAGTATAACTCTTCGTGAAAA
CCCGCACGACTTTCAATTGCAACAGGAGCTTTAGAACAGGGGCACAGCAC
CTGATGGTTGCCGCAGCCAAGCGACAACCAGCAGTAGCGCTGGTGGCTGC
GACTCGGACAGCAGGCGGCCATCCCAACAGGAGGAGATGGAGGTAGCCAT
GGAAGAACGAGAGCGAGACGCCAAGAACAAGAAGCGCTGGCGAGACTATA
CTCTTGGGGTCTCGTCCCTCAAGGCGCGGGCGGAGCTAGACGCAGCACGG
GCAACAGCCGCAGACCTAGACCGGAGGGAGGGGAAGGCCGCCGCCGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1337:3191..5139-

>mRNA_L-elsbetiae_contig1337.2599.1 ID=mRNA_L-elsbetiae_contig1337.2599.1|Name=mRNA_L-elsbetiae_contig1337.2599.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig1337:3191..5139- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACTTGAGCTGGAATCCTCCGAGCCGATTGACTGCCGTGTCATGCTT
CATACTGCTGGATACTGTAGTATTTGCTGGGTGCGCTCGATGCACTTGAG
CTGGAATCCTCCGAGCCGATTGACTGCCGTGTCATGCTTCATACTGCTGG
ATACTGTAGTATTTGCTGGGTGCGCTCGGAGCTTTAGAACAGGGGCACAG
CACCTGATGGTTGCCGCAGCCAAGCGACAACCAGCAGTAGCGCTGGTGGC
TGCGACTCGGACAGCAGGCGGCCATCCCAACAGGAGGAGATGGAGGTAGG
AGCTTTAGAACAGGGGCACAGCACCTGATGGTTGCCGCAGCCAAGCGACA
ACCAGCAGTAGCGCTGGTGGCTGCGACTCGGACAGCAGGCGGCCATCCCA
ACAGGAGGAGATGGAGGTAG
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