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Homology
BLAST of mRNA_L-elsbetiae_contig1330.2559.1 vs. uniprot
Match: D7FYY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY9_ECTSI) HSP 1 Score: 301 bits (772), Expect = 1.310e-98 Identity = 145/169 (85.80%), Postives = 156/169 (92.31%), Query Frame = 1
Query: 1 MEALMAKENLGNDASKVTAKMLSDAYKKSGDQPPSNPTLCSYKRPVLGLEAPAFGALKEVSESEEKGVDIGSLSKSLLDCDVVLKFPPGRQFEQSLLIHILARFKAHDPGRKMPVKTDLPKLRQRALDAGEYYQLVTSVIPYESWSSAFHKAFYALVCGKHTDWETWGK 507
MEA+M K NLGNDASKVTAKMLSDAYKKSGD PPSNPTLCSYKR V+GL+APAF ALK VSESEEKGVDIG LSKSLLDCD VLKFPPGR+FEQSLLIHILARFK ++PG KMP KTDLPKL+QRALDAGEY+QLVTSVIPYESW+S FHK+FY+LV GKHTDWETWGK
Sbjct: 1 MEAVMVKHNLGNDASKVTAKMLSDAYKKSGDSPPSNPTLCSYKRLVIGLKAPAFAALKAVSESEEKGVDIGCLSKSLLDCDAVLKFPPGREFEQSLLIHILARFKTNEPGHKMPAKTDLPKLKQRALDAGEYFQLVTSVIPYESWTSPFHKSFYSLVYGKHTDWETWGK 169
BLAST of mRNA_L-elsbetiae_contig1330.2559.1 vs. uniprot
Match: A0A6H5JZC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC6_9PHAE) HSP 1 Score: 245 bits (625), Expect = 3.300e-76 Identity = 125/184 (67.93%), Postives = 147/184 (79.89%), Query Frame = 1
Query: 1 MEALMAKENLGNDASKVTAKMLSDAYKKSGDQPPSNPTLCSYKRPVLGLEAPAFGALKEVSESEEKGVDIG---------------------SLSKSLLDCDVVLKFPPGRQFEQSLLIHILARFKAHDPGRKMPVKTDLPKLRQRALDAGEYYQLVTSVIPYESWSSAFHKAFYALVCGKHTD 489
+EA+MA ENLGNDASKVTA+MLSDAYKKSGD PPSNP+LCS+KR V+GL+ PAF +LKEVSESEEKGVD+ SLSK+LLDCD VLKFP GR FEQSLLIHILARFK++DP +KMPVK+DLPKLRQRAL+AG+ ++LVTSVIP+ WS FHKAF+A+V G+HTD
Sbjct: 145 LEAIMAAENLGNDASKVTARMLSDAYKKSGDAPPSNPSLCSHKRLVIGLKEPAFASLKEVSESEEKGVDMXGAXXXXXXXXXXXXXXXXXXQSLSKTLLDCDAVLKFPFGRDFEQSLLIHILARFKSNDPRKKMPVKSDLPKLRQRALEAGDLHKLVTSVIPFYHWSPEFHKAFFAIVYGRHTD 328
BLAST of mRNA_L-elsbetiae_contig1330.2559.1 vs. uniprot
Match: A0A6H5JXW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW4_9PHAE) HSP 1 Score: 246 bits (627), Expect = 4.570e-76 Identity = 120/166 (72.29%), Postives = 145/166 (87.35%), Query Frame = 1
Query: 1 MEALMAKENLGNDASKVTAKMLSDAYKKSGDQPPSNPTLCSYKRPVLGLEAPAFGALKEVSESEEKGVDIGSLSKSLLDCDVVLKFPPGRQFEQSLLIHILARFKAHDPGRKMPVKTDLPKLRQRALDAGEYYQLVTSVIPYESWSSAFHKAFYALVCGKHTDWET 498
+EA+MA ENLGNDASKVTA+MLSDAYKKSGD PPSNP+LCS++R V+GL+ AF ALKE+SESE+KGVD+ SL K+LLDC+ VLKFP GR FEQSLLIHILARFK++DPG+KMPVK+DLPKLRQRAL+AG+ ++ VTSVIP+ WS FHKA +A+V G+HTD T
Sbjct: 196 LEAIMAAENLGNDASKVTARMLSDAYKKSGDAPPSNPSLCSHERLVIGLKGLAFAALKEMSESEDKGVDMQSLPKTLLDCEAVLKFPFGRDFEQSLLIHILARFKSNDPGKKMPVKSDLPKLRQRALEAGDLHKHVTSVIPFYHWSPEFHKALFAIVYGRHTDRNT 361
BLAST of mRNA_L-elsbetiae_contig1330.2559.1 vs. uniprot
Match: A0A6H5JDB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB1_9PHAE) HSP 1 Score: 213 bits (541), Expect = 1.390e-58 Identity = 105/131 (80.15%), Postives = 120/131 (91.60%), Query Frame = 1
Query: 1 MEALMAKENLGNDASKVTAKMLSDAYKKSGDQPPSNPTLCSYKRPVLGLEAPAFGALKEVSESEEKGVDIGSLSKSLLDCDVVLKFPPGRQFEQSLLIHILARFKAHDPGRKMPVKTDLPKLRQRALDAGE 393
+EA+MA ENLGND SKVTA+MLSDAYKKSGD PPSNP+LCS+KR V+ L+ PAF ALKEVSESEEKGVD+ SLSK+LLDCD VLKFP GR FEQSLLIHILARFK++DPG+KMPVK+DLPKLRQRAL+AG+
Sbjct: 269 LEAIMAAENLGNDGSKVTARMLSDAYKKSGDAPPSNPSLCSHKRLVIRLKGPAFAALKEVSESEEKGVDMQSLSKTLLDCDAVLKFPFGRDFEQSLLIHILARFKSNDPGKKMPVKSDLPKLRQRALEAGD 399
BLAST of mRNA_L-elsbetiae_contig1330.2559.1 vs. uniprot
Match: A0A6H5KEI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI5_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 3.710e-16 Identity = 72/173 (41.62%), Postives = 101/173 (58.38%), Query Frame = 2
Query: 515 MSERNQQVEHLAGLLKKDHNLSEEHARIIKSQLPSKLN----------------------------------QVAKRSPDMQPYLDTWAKKMAEVNVFVEQHKASADSXXXXXXXXXXXXXXXXPPKLCSVCKPS-PAEGSKCKSCNTVHLETCAAI-NNGPGTDLECKDCPD 925
M +R+++VEHL+GLLK+ L+EEH IIKS+L +KL+ Q+A++S DM+P++D W K+M++V+VFV+QH+ S XXXXXXXXXXXXX ++ V PS P++GSK C +HLE+C I G G L CKDCP+
Sbjct: 1 MQDRDREVEHLSGLLKRGTQLTEEHVCIIKSKLTNKLDKVGVPVCLAVPFRLLRPESFTAILDVVACSSHFPQLARKSSDMRPFMDAWDKRMSDVDVFVQQHEGDTYSSXXXXXXXXXXXXXTPESRVRDVGNPSSPSDGSKYAKCGILHLESCNVIVKEGDGA-LVCKDCPE 172
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 6 |
Model size | 928 |
Cds size | 681 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815505.8563466-UTR-L-elsbetiae_contig1330:12529..12629 | 1622815505.8563466-UTR-L-elsbetiae_contig1330:12529..12629 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1330 12530..12629 - |
1691682931.4042156-UTR-L-elsbetiae_contig1330:12529..12629 | 1691682931.4042156-UTR-L-elsbetiae_contig1330:12529..12629 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1330 12530..12629 - |
1622815505.8662267-UTR-L-elsbetiae_contig1330:13117..13264 | 1622815505.8662267-UTR-L-elsbetiae_contig1330:13117..13264 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1330 13118..13264 - |
1691682931.4122314-UTR-L-elsbetiae_contig1330:13117..13264 | 1691682931.4122314-UTR-L-elsbetiae_contig1330:13117..13264 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1330 13118..13264 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815505.8779237-CDS-L-elsbetiae_contig1330:13264..13314 | 1622815505.8779237-CDS-L-elsbetiae_contig1330:13264..13314 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1330 13265..13314 - |
1691682931.4198623-CDS-L-elsbetiae_contig1330:13264..13314 | 1691682931.4198623-CDS-L-elsbetiae_contig1330:13264..13314 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1330 13265..13314 - |
1622815505.8875475-CDS-L-elsbetiae_contig1330:13580..13759 | 1622815505.8875475-CDS-L-elsbetiae_contig1330:13580..13759 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1330 13581..13759 - |
1691682931.4281316-CDS-L-elsbetiae_contig1330:13580..13759 | 1691682931.4281316-CDS-L-elsbetiae_contig1330:13580..13759 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1330 13581..13759 - |
1622815505.8980246-CDS-L-elsbetiae_contig1330:14440..14584 | 1622815505.8980246-CDS-L-elsbetiae_contig1330:14440..14584 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1330 14441..14584 - |
1691682931.436946-CDS-L-elsbetiae_contig1330:14440..14584 | 1691682931.436946-CDS-L-elsbetiae_contig1330:14440..14584 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1330 14441..14584 - |
1622815505.9082441-CDS-L-elsbetiae_contig1330:14793..15017 | 1622815505.9082441-CDS-L-elsbetiae_contig1330:14793..15017 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1330 14794..15017 - |
1691682931.4461033-CDS-L-elsbetiae_contig1330:14793..15017 | 1691682931.4461033-CDS-L-elsbetiae_contig1330:14793..15017 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1330 14794..15017 - |
1622815505.9198754-CDS-L-elsbetiae_contig1330:15603..15687 | 1622815505.9198754-CDS-L-elsbetiae_contig1330:15603..15687 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1330 15604..15687 - |
1691682931.4551191-CDS-L-elsbetiae_contig1330:15603..15687 | 1691682931.4551191-CDS-L-elsbetiae_contig1330:15603..15687 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1330 15604..15687 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1330.2559.1 >prot_L-elsbetiae_contig1330.2559.1 ID=prot_L-elsbetiae_contig1330.2559.1|Name=mRNA_L-elsbetiae_contig1330.2559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=227bp
MEALMAKENLGNDASKVTAKMLSDAYKKSGDQPPSNPTLCSYKRPVLGLE APAFGALKEVSESEEKGVDIGSLSKSLLDCDVVLKFPPGRQFEQSLLIHI LARFKAHDPGRKMPVKTDLPKLRQRALDAGEYYQLVTSVIPYESWSSAFH KAFYALVCGKHTDWETWGKRSHVGEEPAGGASCWLVEEGSQPVRGACTDH QVSASVEAESGCQEESGHAALSRHLG* back to topmRNA from alignment at L-elsbetiae_contig1330:12530..15687- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1330.2559.1 ID=mRNA_L-elsbetiae_contig1330.2559.1|Name=mRNA_L-elsbetiae_contig1330.2559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3158bp|location=Sequence derived from alignment at L-elsbetiae_contig1330:12530..15687- (Laminarionema elsbetiae ELsaHSoW15) ATGGAGGCTCTCATGGCGAAAGAGAACCTCGGCAACGACGCCTCCAAGGT
CACAGCTAAGATGCTTTCAGACGCTTACAAAAAAGTGCCCGACCCACTTC
ATTGTTCTCGTGGTGTAGTATACATATATATATATGTATACGTGTTTTCC
GCTTCCTGCTGTGAAATTCAAATAAAGTTGTTCTTGAATTACTACTGGTG
TTGCGTCTTTCTCGCAACCACCACCAGAAGCTTGCCCTTGGGTACTCCTA
ACCCAACTTGGAAAAATGTGTTTTGTATAATCCCGCATCTGAGTGGAGGT
GGTACGATATCAGCACTTCACTTGTTTTTGTTCGATCACCTGCAACAAGT
ATTGTCGGGGGACAACAACAACAGTGCTCGGACTTACGAACTTCTATGCT
TGGACTACATCATTCACGCATGCGTGTTGGCGCCTCCTGATTGTCTTCCG
TTGTTTTATATTCCTTTGTTTGTTTTCAGCTTTACTTTCCAGGTAGAGCA
AGGCCGCTTGCCTCGTTCCTCAATGCATTCCCTGCTTCGAGCTCTTCATA
GCTCTGCCCCGCACACGCACGTGTTCATGTTTTGTGATATTGAGCTCAGT
TTCCCACATCTGTGGTGCTGTGTCTGTGCCGTGTGTCCGTTGATATGTTT
CGGCACTTGCATGCTTGAAGAGCGGGGACCAACCCCCAAGCAACCCGACT
CTTTGCAGTTACAAGAGGCCCGTGTTGGGGCTCGAGGCTCCTGCGTTTGG
GGCATTGAAGGAGGTGTCGGAAAGCGAGGAAAAGGGTGTGGATATCGGAA
GCTTGTCGAAAAGTCTGCTCGACTGCGACGTTGTTCTCAAGTTCCCTCCC
GGACGCCAGTTCGAGCAGTCTCTCCTGATCCACATCCTTGCGAGGTATTT
AGCGGACCGAACACCCCAACCATTCCTGCGTAGGTTCTTGTGTCGAACAG
CAGCGCTCTTGTTTCACGCACCAGGTAACATGTCATCTCGTTAGCTAAAT
TAGGTTTCTATCGGTGTCATGCCTCTCTCTGATGTATAATTTTCTGGAGG
TTCTGAACGCCGCCCCTTCCACACACGCTCGCGCTTGTCGTGCTATCTAC
CAGGTTCAAGGCCCACGACCCGGGGCGCAAGATGCCCGTAAAGACCGACC
TTCCCAAGCTCAGGCAACGGGCGCTCGACGCTGGAGAGTACTACCAGCTC
GTGACATCCGTCATCCCGTACGAAAGCTGGAGTTCTGCTTTCCACAAGTA
AGTTCTGTCTTCTCAGTGTAGCTCAGGGGGGTACCGTAGATGGCGCTGTC
GTGCACCAGGACTTCTGTCATTGGCCCCCCAATGCCTTCCCGGCCTGTAG
CATCATCGTGCCGTCGTGCCCCCGGGGTGGCAAGCTTTTTGCACGGAAAA
AAACACATGCCCCCCCTTCTCCGTTATGCCCGGGGTGGTGTGCTTTCACA
AAAAAAAAACAATCCCCCCAAGTATGAGTGAGTGTACAGCAGAGAATTTC
CCCACTTGAAATGATGCCTTGGATAAAGACAGGATAGCTGCTTGTAGAAT
TTATCTATCGTGATGGATGTGCGTGTGGTATGTGCGTGGTGTTCCCCCGG
GGTAGTGTCCACGAAAACAAATTGCCCTCCCCTTTTTTCATCATTTGCCC
CCCGGGTGTGCATTCCACAAAAAAAAATAACGTTACCCTCCCCGGGGGCA
CGACATCCTTTTTTCGGTATGTTCCTGTCGCGGTGCTTCGTGCCATCGTG
AGAAGCAGCTACAGCGCGTACGTGGTTTGTTGCTGGTGTTGTCGAAAAAC
AGGCGGCGTGTTGCGCCGTCGATCTATCCCAATTGCCACGTTGCCCTCAA
CAATGTAATCTTGGGCAATAGTTTGAGTGCCTCTGACCGAGCGCTAAATG
ATGATCGCTTCCGCATGGACGCACACAGGGCGTTTTACGCGCTGGTGTGC
GGCAAGCACACGGACTGGGAGACGTGGGGGAAAAGGTCACATGTCGGAGA
GGAACCAGCAGGTGGAGCATCTTGCTGGCTTGTTGAAGAAGGATCACAAC
CTGTCCGAGGAGCATGCACGGATCATCAAGTCTCAGCTTCCGTCGAAGCT
GAATCAGGTAGGCTTAGATGCTCGCGTACTCTTTCGCATGCGTTTTTTTT
TCTCTTGAGAGCGAGAGCCGCCGCCGTGTTACATAGACACCGATCGTGCG
TTGTGGCGTGGGGTGACCAACGTCATGTATTTGACGCCCCTTGATACCCA
CCCACCGGAGCACTCAAACGATCATCACACACGTGCCTGCGTCTCTGTCG
AGCCCCTTGCATTCTGAGTCCATCAGCGCACCGTTCAACAATACCCAAAC
CCTGTTCGTCGCTTGCTCCCCAGGTTGCCAAGAGGAGTCCGGACATGCAG
CCTTATCTCGACACCTGGGCTAAGAAGATGGCGGAGGTGAATGTTTTCGT
GGAACAGCACAAGGCCTCCGCTGACAGCTCGTCGTCGTCCAGTTCTTCGT
CAGAGTCCTCCGACGATGATGACTCGCCGCCAAAGCTTTGCAGCGTGTGC
AAGCCCTCTCCCGCCGAAGGGTGAGAATTCCGAGTTCTTCACGCTGAATA
AAAATTCCGAGTTCTTCACGCTGAATACCCTCAGTTTCCCTCGAGCAACT
ACCGTAAGCGCCCCCCAGCTGCTGTCGTCCTTGCAGCTATTTCCTCACAT
TCTGTACGGATTTTCTGTTCCTCAGCCCTCTGTTTCTTCAATACTTGCCC
GTAAACCTTATGCATCGTGGTCGCCATTCTCGCCATTCTCGTTGTGTGCG
GGCGCATAGGAGAAAAATAATAAAGCAAGCTCCCCCCGGGGGGATTGGGT
TCAGCAAAAAAATAGATCCCCTCTCCGATGGGACAACTCCGACGCCTACG
GTAACATCGTCCACGTCGACACCTTGCGTTACTAGCTTGTGTGACTCGCC
GTCTCAACATCGTCGGTCATAGTCGTTATTCCTGATCATTCTCTCTCGTT
GATTTGCACCCTGCACCCGATGATGTCATGTTTATTGGTTTGTGTCGATG
AGTGACAGGTCCAAGTGCAAGAGCTGCAACACCGTGCACCTCGAGACGTG
CGCCGCCATCAACAACGGCCCCGGCACGGATCTCGAGTGCAAAGATTGCC
CGGACTCA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1330:12530..15687- >mRNA_L-elsbetiae_contig1330.2559.1 ID=mRNA_L-elsbetiae_contig1330.2559.1|Name=mRNA_L-elsbetiae_contig1330.2559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1362bp|location=Sequence derived from alignment at L-elsbetiae_contig1330:12530..15687- (Laminarionema elsbetiae ELsaHSoW15) ATGGAGGCTCTCATGGCGAAAGAGAACCTCGGCAACGACGCCTCCAAGGT CACAGCTAAGATGCTTTCAGACGCTTACAAAAAAATGGAGGCTCTCATGG CGAAAGAGAACCTCGGCAACGACGCCTCCAAGGTCACAGCTAAGATGCTT TCAGACGCTTACAAAAAAAGCGGGGACCAACCCCCAAGCAACCCGACTCT TTGCAGTTACAAGAGGCCCGTGTTGGGGCTCGAGGCTCCTGCGTTTGGGG CATTGAAGGAGGTGTCGGAAAGCGAGGAAAAGGGTGTGGATATCGGAAGC TTGTCGAAAAGTCTGCTCGACTGCGACGTTGTTCTCAAGTTCCCTCCCGG ACGCCAGTTCGAGCAGTCTCTCCTGATCCACATCCTTGCGAGAGCGGGGA CCAACCCCCAAGCAACCCGACTCTTTGCAGTTACAAGAGGCCCGTGTTGG GGCTCGAGGCTCCTGCGTTTGGGGCATTGAAGGAGGTGTCGGAAAGCGAG GAAAAGGGTGTGGATATCGGAAGCTTGTCGAAAAGTCTGCTCGACTGCGA CGTTGTTCTCAAGTTCCCTCCCGGACGCCAGTTCGAGCAGTCTCTCCTGA TCCACATCCTTGCGAGGTTCAAGGCCCACGACCCGGGGCGCAAGATGCCC GTAAAGACCGACCTTCCCAAGCTCAGGCAACGGGCGCTCGACGCTGGAGA GTACTACCAGCTCGTGACATCCGTCATCCCGTACGAAAGCTGGAGTTCTG CTTTCCACAAGTTCAAGGCCCACGACCCGGGGCGCAAGATGCCCGTAAAG ACCGACCTTCCCAAGCTCAGGCAACGGGCGCTCGACGCTGGAGAGTACTA CCAGCTCGTGACATCCGTCATCCCGTACGAAAGCTGGAGTTCTGCTTTCC ACAAGGCGTTTTACGCGCTGGTGTGCGGCAAGCACACGGACTGGGAGACG TGGGGGAAAAGGTCACATGTCGGAGAGGAACCAGCAGGTGGAGCATCTTG CTGGCTTGTTGAAGAAGGATCACAACCTGTCCGAGGAGCATGCACGGATC ATCAAGTCTCAGCTTCCGTCGAAGCTGAATCAGGGCGTTTTACGCGCTGG TGTGCGGCAAGCACACGGACTGGGAGACGTGGGGGAAAAGGTCACATGTC GGAGAGGAACCAGCAGGTGGAGCATCTTGCTGGCTTGTTGAAGAAGGATC ACAACCTGTCCGAGGAGCATGCACGGATCATCAAGTCTCAGCTTCCGTCG AAGCTGAATCAGGTTGCCAAGAGGAGTCCGGACATGCAGCCTTATCTCGA CACCTGGGCTAAGTTGCCAAGAGGAGTCCGGACATGCAGCCTTATCTCGA CACCTGGGCTAA back to top
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