mRNA_L-elsbetiae_contig1322.2510.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1322.2510.1
Unique NamemRNA_L-elsbetiae_contig1322.2510.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1322.2510.1 vs. uniprot
Match: D8LC71_ECTSI (Protein CASP n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC71_ECTSI)

HSP 1 Score: 483 bits (1243), Expect = 3.670e-159
Identity = 338/581 (58.18%), Postives = 384/581 (66.09%), Query Frame = 1 
Query:    1 QVLQQEVERLEARAALVEEEAGRAGQLEEEAAARAEQLRALQEKAGVESLETGHEALAARTKAAAQAEKEALAGLAEARXXXXXXXRSAAERVRGLEEEATRLRRQLETGADAAQARERERVEAMREKIRILEGIWGDDGSGXXXXXXXXXXXXXXXXXXXXXAAVERDAGEGTERTESEARATXXXXXXRDGGSEGGRSRRGVRPGRPGGRDVGGSDSASDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDAWLISYNRRLKSELERLRERTRQAEDRLESVEGQRVAEGAELADRRRDVKRLEQDLVDAHQVVEAGKTMLRAFQSGPVARQFGKLVGRGGXXXXXXXXXXXXXXGDDARGGLEGDDYYLEGVEDGGAEEGDPGSEGFSAADRLLGAVKRQRERFRKEALRREREASIAKGNAEQLTRDNQDLRRENMHLYKKIRQANAFVMSYGGKGGGGAG-LDDGVGEGERDTESKYEKIYEAGLDPFKEFDSQEKETRRGQMGFLEKGLFMASGTVLRSRFRRHVLVIYLLVVHALLLVLPGGVGGATSPGIEAG 1740
            QVLQQEVERLE RAA+VEEEAGRAG+LEEEAA    QLRA +EK  V SLE   E L +R++ A Q+E++A+AG AEA        RS+  RVR +E EA RLR+QLE+GADA++      V++MREKIRILEGIWGD                         AA       G ERT   + +        +GG E G    GV  G        GS    D                          XXXXX                 GVDAWLISYNRRLK+ELERLRERTRQAE+RL  VE +RVAE AEL+DRR+DVKRLEQDLVDAHQVVEAGKTMLRAFQSGPVA+QFGKL+GR G              G D  G LE  D  LEGVE+ G  EG PG+EGFSAADRLLGAVKRQRERFRKEALRREREASIAKGNAEQLTRDNQDLRRENMHLYK++R    FVMSYGGKG      L++  G+GER+TE KYE++YEA LDPFKEFDSQEKE RRGQMGFLE+ LF+ASGTVLR+RFRRH+L++YLLV+H LLLV+PGG GG T PGI  G
Sbjct:  235 QVLQQEVERLETRAAMVEEEAGRAGRLEEEAADLTGQLRASREK--VASLEAEREGLVSRSREAVQSERDAVAGCAEAEARAKSVERSSEIRVREVEAEAARLRQQLESGADASE------VKSMREKIRILEGIWGDADVEEGDEGERVGSMKGRVSTGGEGAA-------GGERTHPHSPSPAAA----EGGVEEGPQHGGVAEGE-------GSGVGDDCDRALESEGASGKLEGAVVGGTECGRXXXXXA----------------GVDAWLISYNRRLKNELERLRERTRQAEERLRIVEEERVAEAAELSDRRQDVKRLEQDLVDAHQVVEAGKTMLRAFQSGPVAKQFGKLIGRRGDVGG----------GADDVGPLE--DDLLEGVEEAGGVEGVPGAEGFSAADRLLGAVKRQRERFRKEALRREREASIAKGNAEQLTRDNQDLRRENMHLYKRMR----FVMSYGGKGXXXXXXLENAGGDGERETERKYERLYEADLDPFKEFDSQEKEARRGQMGFLERWLFLASGTVLRNRFRRHLLLVYLLVLHGLLLVMPGGRGGNT-PGISMG 756
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BLAST of mRNA_L-elsbetiae_contig1322.2510.1 vs. uniprot
Match: A0A6H5KKM0_9PHAE (Protein CASP n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKM0_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 6.420e-40
Identity = 77/100 (77.00%), Postives = 90/100 (90.00%), Query Frame = 1 
Query: 1420 MSYGGKGGGGAGLDDGVGEGERDTESKYEKIYEAGLDPFKEFDSQEKETRRGQMGFLEKGLFMASGTVLRSRFRRHVLVIYLLVVHALLLVLPGGVGGAT 1719
            MSYGGKGGGG G +D  G+GER+TESKYE++YEA LDPFKEFDSQEKE RRGQMGFLE+ LF+ASGTVLR+RFRRH+L++YLLV+H LLLV+PGG GG T
Sbjct:    1 MSYGGKGGGG-GSEDAGGDGERETESKYERLYEADLDPFKEFDSQEKEARRGQMGFLERWLFLASGTVLRNRFRRHLLLVYLLVLHGLLLVMPGGRGGNT 99
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BLAST of mRNA_L-elsbetiae_contig1322.2510.1 vs. uniprot
Match: A0A6H5KKH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKH3_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.080e-31
Identity = 146/302 (48.34%), Postives = 165/302 (54.64%), Query Frame = 1 
Query:    1 QVLQQEVERLEARAALVEEEAGRAGQLEEEAAARAEQLRALQEKA-GVESLETGHEALAARTKAAAQAEKEALAGLAEARXXXXXXXRSAAERVRGLEEEATRLRRQLETGADAAQARERERVEAMREKIRILEGIWGDDGSGXXXXXXXXXXXXXXXXXXXXXAAVERDAGEGTERTESEARATXXXXXXRDGGSEGGRSRRGVRPGRPGGRDVGGS-DSASDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDAWLISYNRRLKSELERLRERTRQAEDR 900
            QVLQQEVERLEARAA+VEEEAGRAG+LEEEAA    QLRA +EKA  V  LE   E L AR++ A Q+E+ A+ G AEA        RS+  RVR +E EA RLR+QLETGADAA+      V+ MREKIRILEGIWGD                         AA       G ERT   + +        +GG E G     V  G   G  VGG  D A +  XXXXXXXXXXXXX                                 GVDAWLISYNRRLK+ELERLRERTRQAE+R
Sbjct:  235 QVLQQEVERLEARAAMVEEEAGRAGRLEEEAADLRGQLRASREKAKDVALLEAEREGLVARSREAVQSERAAVVGCAEAEARAKSVERSSEVRVREVEAEAARLRQQLETGADAAE------VKGMREKIRILEGIWGDADVDEGDEGEWVGSTKGPVSTGGEVAA-------GGERTHPLSPSPAAA----EGGVEEGSQYGSVAEGE--GSGVGGKCDGAIESEXXXXXXXXXXXXXAESRRRGGGDG----------------------GVDAWLISYNRRLKNELERLRERTRQAEER 495
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BLAST of mRNA_L-elsbetiae_contig1322.2510.1 vs. uniprot
Match: A0A836CBY3_9STRA (Protein CASP n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBY3_9STRA)

HSP 1 Score: 108 bits (269), Expect = 7.830e-21
Identity = 94/262 (35.88%), Postives = 129/262 (49.24%), Query Frame = 1 
Query:  937 AELADRRRDVKRLEQDLVDAHQVVEAGKTMLRAFQSGPVARQFGKLVGRGGXXXXXXXXXXXXXXG--DDARGGL----EGDDYYLEGVEDGGAEEGDPGSEGFSAADRLLGAVKRQRERFRKEALRREREASIAKGNAEQLTRDNQDLRRENMHLYKKIRQANAFVMSYGGKGGGGAGLDDGVGEGERDTESKYEKIYEAGLDPFKEFDSQEKETRRGQMGFLEKGLFMASGTVLRSRFRRHVLVIYLLVVHALLLVLPGG 1704
            A L D RRDV RLEQDL +A QVVEAG+ MLR+ Q+       G   G G               G  DD  G L    EG+D  LEG                S ADR+L AV+RQR RFRK+AL +E E ++ +   EQL + NQ+++R+N+ LY+++R   +     GG    G+ + D   +  R  E++Y  +Y    DPF+    Q  E     +   EK L +    VL  R RR  L++YL  VH L ++   G
Sbjct:  574 ASLEDARRDVARLEQDLTNAQQVVEAGRIMLRSHQA-RAGSTSGPSGGLGALLGGLARRRSSAQRGAEDDGGGALPDLEEGEDAILEGC---------------SPADRMLAAVQRQRSRFRKQALAKEAELALQRSTIEQLQQQNQEVQRDNLALYRRLRSLQS--RGGGGXXXXGSRMGDREAQESRAAEARYADLYNKERDPFRALLMQG-EDWGSCLAPPEKALLLCCRVVLIDRVRRLALLLYLFAVHCLAVLALSG 816
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BLAST of mRNA_L-elsbetiae_contig1322.2510.1 vs. uniprot
Match: A0A6A4VU46_AMPAM (Protein CASP n=3 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VU46_AMPAM)

HSP 1 Score: 73.2 bits (178), Expect = 5.830e-11
Identity = 58/163 (35.58%), Postives = 80/163 (49.08%), Query Frame = 1 
Query: 1207 GDPGSEGFSAADRLLGAVKRQRERFRKEALRREREASIAKGNAEQLTRDNQDLRRENMHLYKKIRQANAFVMSYGGKGGGGAGLDDGVGEGERDTESKYEKIYEAGLDPFKEFDSQEKETRRGQMGFLEKGLFMASGTVLRSRFRRHVLVIYLLVVHALLLVL 1695
            GDPGS    AAD +L  V  QRERFR      E+E ++A+        +  DLRR+N+ L++KIR    F+ SY  +     G         +D ES+Y   YE  LDPF  F  QE+  +  Q+   EK        VL SR  R V  +Y L++H L+  +
Sbjct:   45 GDPGS----AADTILPIVTAQRERFRLRIQELEQERNMAQHELSLKDTEIDDLRRDNLKLFEKIR----FLQSYSSQKPKKPG---------QDVESRYSSQYEQSLDPFSSFSRQERARKYSQLSPFEKVTLSMGQLVLSSRTARTVAFLYTLLLHLLVFAV 190
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BLAST of mRNA_L-elsbetiae_contig1322.2510.1 vs. uniprot
Match: A0A0D2MJ70_9CHLO (Protein CASP n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MJ70_9CHLO)

HSP 1 Score: 70.9 bits (172), Expect = 1.320e-9
Identity = 87/293 (29.69%), Postives = 126/293 (43.00%), Query Frame = 1 
Query:  826 LISYNRRLKSELERLRERTRQAEDRLESVEGQRVAEGAELADRRRDVKRLEQDLVDAHQVVEAGKTMLRA-FQSGPVARQFGKLVGRGGXXXXXXXXXXXXXXGDDARGGLEGDDYYLEGVEDGGAEEGDPGSEGFSAADRLLGAVKRQRERFRKEALRREREASIAKGNAEQLTRDNQDLRRENMHLYKKIRQANAFVMSYGGK----GGGGAGLDDGVGEGER-DTESKYEKIYEAGLDPFKEFDSQEKETRRGQMGFLEKGLFMASGTVLRSRFRRHVLVIYLLVVHALL 1686
            L++ NRRL+ EL   R    + E RL++ +GQ      +L D+   VK+LE+DL++     +A     RA   S   A        RGG                   GG         GV  G  EE        S    L+G    QRER R      E + S A+G AE   R  +  R +N+ L +++R    +      +    GG  AG D   G G   D   +Y ++YE  ++PF+EF  Q+ E +R QMG  +K ++     V RS   R V   YL+V+H L+
Sbjct:    2 LLAKNRRLEHELTMARLAAAETEQRLDAAQGQVSELEGKLEDKEALVKQLEEDLLETRGAAKAAAGAQRAALLSLDGAGSLDAPTPRGG-------------------GGAS-----FSGVGSGADEE--------SVVRVLVG----QRERLRARVKELEEQLSAARGAAEAARRQLEAARADNVALVERLRYVGGYRQQAAARKDAAGGRPAGADVEAGGGAAGDVVGRYAQLYEDRINPFQEFQGQQHEQKRRQMGVADKAMYGVGQLVYRSAAARLVAFCYLVVMHTLV 258
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BLAST of mRNA_L-elsbetiae_contig1322.2510.1 vs. uniprot
Match: A0A250WT84_9CHLO (Protein CASP n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WT84_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 2.090e-7
Identity = 44/147 (29.93%), Postives = 74/147 (50.34%), Query Frame = 1 
Query: 1246 LLGAVKRQRERFRKEALRREREASIAKGNAEQLTRDNQDLRRENMHLYKKIRQANAFVMSYGGKGGGGAGLDDGVGEGERDTESKYEKIYEAGLDPFKEFDSQEKETRRGQMGFLEKGLFMASGTVLRSRFRRHVLVIYLLVVHALL 1686
            +L  +  QR+RFR+ A+  E E S  KG+           + +N+ L +++R  + +            G D   G    + E KY KIYE G++PFKEF  Q++E ++ +MG  ++ ++     V  S+  R    IYL+V+H L+
Sbjct:  559 MLRVLCNQRDRFRQRAVELEEELSRVKGDLAAAKXXXXXXKADNIALVERLRYVHGYKKQ--------EGRDVETGSAGAEVERKYTKIYEEGINPFKEFQGQQRERQKQRMGVADRAMYKFGNLVFGSQGVRLFTFIYLIVLHLLV 697
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BLAST of mRNA_L-elsbetiae_contig1322.2510.1 vs. uniprot
Match: A0A8J4LNL4_9CHLO (Protein CASP n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4LNL4_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 4.280e-6
Identity = 35/108 (32.41%), Postives = 64/108 (59.26%), Query Frame = 1 
Query: 1372 ENMHLYKKIRQANAFVMSYG-GKGGGGAGLDDGVGEGERDTESKYEKIYEAGLDPFKEFDSQEKETRRGQMGFLEKGLFMASGTVLRSRFRRHVLVIYLLVVHALLLV 1692
            +N+ L +++R  ++   + G GK G GA ++ G      + E +Y KIY+ G++PF+EF  Q+KE ++  MG +++ ++M S  V  +   R    +YL ++HAL+ V
Sbjct:  573 DNIALVERLRYVHSRTTAVGDGKAGKGADVEVGA-----EVERRYGKIYDEGINPFREFKEQQKERQKSAMGLVDRAMYMLSQLVYGNSAARMFAFLYLALMHALVFV 675
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BLAST of mRNA_L-elsbetiae_contig1322.2510.1 vs. uniprot
Match: A0A8J4B7N0_9CHLO (Protein CASP (Fragment) n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B7N0_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 9.790e-6
Identity = 34/106 (32.08%), Postives = 62/106 (58.49%), Query Frame = 1 
Query: 1372 ENMHLYKKIRQANAFVMSYG-GKGGGGAGLDDGVGEGERDTESKYEKIYEAGLDPFKEFDSQEKETRRGQMGFLEKGLFMASGTVLRSRFRRHVLVIYLLVVHALL 1686
            +N+ L +++R  ++     G GK G GA ++ G      + E +Y KIY+ G++PF+EF  Q+KE ++  MG +++ ++M S  V  +   R    +YL ++HAL+
Sbjct:  227 DNLALVERLRYVHSRTTPVGDGKAGKGADVEAGA-----EVERRYGKIYDEGINPFREFKEQQKERQKSAMGLVDRAMYMLSQLVYGNSAARMFAFMYLALMHALV 327
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BLAST of mRNA_L-elsbetiae_contig1322.2510.1 vs. uniprot
Match: A0A2V0PEV9_9CHLO (Protein CASP n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PEV9_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 5.170e-5
Identity = 45/156 (28.85%), Postives = 77/156 (49.36%), Query Frame = 1 
Query: 1240 DRLLGAVKRQRERFRKEALRREREASIAKGNAEQLTRDNQDLRRENMHLYKKIR-------QANAFVMSYGGKGGGGAGLDDGVGEGERDTESKYEKIYEAGLDPFKEFDSQEKETRRGQMGFLEKGLFMASGTVLRSRFRRHVLVIYLLVVHALL 1686
            D L   +  QR+R R      E + + A+  ++      +  R +N+ L +++R       QA A   + G +G   A ++ G   G  D   +Y ++YE  ++PFKEF  Q+ E +R QMG  +K ++     V +S   R V  +YL+ +HAL+
Sbjct:  510 DSLARVLAGQRDRLRARVKELEEQLAAARAASDAAAAALEAARADNVALVERLRYVGGYRQQAAARKDAAGPRGAASADVEAG---GAGDVVGRYSQLYEERINPFKEFQGQQHEQKRRQMGVADKAMYSVGHLVYQSPAARLVAFVYLVAMHALV 662
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1322.2510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LC71_ECTSI3.670e-15958.18Protein CASP n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5KKM0_9PHAE6.420e-4077.00Protein CASP n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KKH3_9PHAE1.080e-3148.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CBY3_9STRA7.830e-2135.88Protein CASP n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A6A4VU46_AMPAM5.830e-1135.58Protein CASP n=3 Tax=Amphibalanus amphitrite TaxID... [more]
A0A0D2MJ70_9CHLO1.320e-929.69Protein CASP n=1 Tax=Monoraphidium neglectum TaxID... [more]
A0A250WT84_9CHLO2.090e-729.93Protein CASP n=1 Tax=Chlamydomonas eustigma TaxID=... [more]
A0A8J4LNL4_9CHLO4.280e-632.41Protein CASP n=3 Tax=Volvox TaxID=3066 RepID=A0A8J... [more]
A0A8J4B7N0_9CHLO9.790e-632.08Protein CASP (Fragment) n=1 Tax=Volvox africanus T... [more]
A0A2V0PEV9_9CHLO5.170e-528.85Protein CASP n=1 Tax=Raphidocelis subcapitata TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1322contigL-elsbetiae_contig1322:232..5644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score490.7
Seed ortholog evalue9.3e-136
Seed eggNOG ortholog2880.D8LC71
KEGG koko:K09313
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016192,GO:0031090,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048193,GO:0051179,GO:0051234,GO:0098588,GO:0098791
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG0963@1,KOG0963@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Ec32 ortholog descriptionCASP, C-terminal
Ec32 orthologEc-20_004680.2
Exons7
Model size1767
Cds size1767
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.8706954-CDS-L-elsbetiae_contig1322:231..3691622815500.8706954-CDS-L-elsbetiae_contig1322:231..369Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1322 232..369 +
1691682928.542567-CDS-L-elsbetiae_contig1322:231..3691691682928.542567-CDS-L-elsbetiae_contig1322:231..369Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1322 232..369 +
1622815500.88572-CDS-L-elsbetiae_contig1322:699..9241622815500.88572-CDS-L-elsbetiae_contig1322:699..924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1322 700..924 +
1691682928.5539253-CDS-L-elsbetiae_contig1322:699..9241691682928.5539253-CDS-L-elsbetiae_contig1322:699..924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1322 700..924 +
1622815500.8973143-CDS-L-elsbetiae_contig1322:1408..19441622815500.8973143-CDS-L-elsbetiae_contig1322:1408..1944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1322 1409..1944 +
1691682928.562652-CDS-L-elsbetiae_contig1322:1408..19441691682928.562652-CDS-L-elsbetiae_contig1322:1408..1944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1322 1409..1944 +
1622815500.9116557-CDS-L-elsbetiae_contig1322:2541..28991622815500.9116557-CDS-L-elsbetiae_contig1322:2541..2899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1322 2542..2899 +
1691682928.5718758-CDS-L-elsbetiae_contig1322:2541..28991691682928.5718758-CDS-L-elsbetiae_contig1322:2541..2899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1322 2542..2899 +
1622815500.9322777-CDS-L-elsbetiae_contig1322:3227..33821622815500.9322777-CDS-L-elsbetiae_contig1322:3227..3382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1322 3228..3382 +
1691682928.581015-CDS-L-elsbetiae_contig1322:3227..33821691682928.581015-CDS-L-elsbetiae_contig1322:3227..3382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1322 3228..3382 +
1622815500.9460468-CDS-L-elsbetiae_contig1322:4197..43371622815500.9460468-CDS-L-elsbetiae_contig1322:4197..4337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1322 4198..4337 +
1691682928.5902774-CDS-L-elsbetiae_contig1322:4197..43371691682928.5902774-CDS-L-elsbetiae_contig1322:4197..4337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1322 4198..4337 +
1622815500.9602768-CDS-L-elsbetiae_contig1322:5429..56441622815500.9602768-CDS-L-elsbetiae_contig1322:5429..5644Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1322 5430..5644 +
1691682928.6015184-CDS-L-elsbetiae_contig1322:5429..56441691682928.6015184-CDS-L-elsbetiae_contig1322:5429..5644Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1322 5430..5644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1322.2510.1prot_L-elsbetiae_contig1322.2510.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1322 232..5644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1322.2510.1

>prot_L-elsbetiae_contig1322.2510.1 ID=prot_L-elsbetiae_contig1322.2510.1|Name=mRNA_L-elsbetiae_contig1322.2510.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=589bp
QVLQQEVERLEARAALVEEEAGRAGQLEEEAAARAEQLRALQEKAGVESL
ETGHEALAARTKAAAQAEKEALAGLAEARARASSAERSAAERVRGLEEEA
TRLRRQLETGADAAQARERERVEAMREKIRILEGIWGDDGSGGGEGGGGG
GTPTSRRGRRRGGAAVERDAGEGTERTESEARATAAAAAARDGGSEGGRS
RRGVRPGRPGGRDVGGSDSASDSGGGGGGGEGESEDVGASVAGGAGAGAE
SGEAAAREGGGADADADADAGVDAWLISYNRRLKSELERLRERTRQAEDR
LESVEGQRVAEGAELADRRRDVKRLEQDLVDAHQVVEAGKTMLRAFQSGP
VARQFGKLVGRGGGGGSAAAPATGAGAGDDARGGLEGDDYYLEGVEDGGA
EEGDPGSEGFSAADRLLGAVKRQRERFRKEALRREREASIAKGNAEQLTR
DNQDLRRENMHLYKKIRQANAFVMSYGGKGGGGAGLDDGVGEGERDTESK
YEKIYEAGLDPFKEFDSQEKETRRGQMGFLEKGLFMASGTVLRSRFRRHV
LVIYLLVVHALLLVLPGGVGGATSPGIEAGTGGDHLMP*
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mRNA from alignment at L-elsbetiae_contig1322:232..5644+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1322.2510.1 ID=mRNA_L-elsbetiae_contig1322.2510.1|Name=mRNA_L-elsbetiae_contig1322.2510.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5413bp|location=Sequence derived from alignment at L-elsbetiae_contig1322:232..5644+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTCTCCAGCAGGAGGTAGAGCGCCTGGAGGCTAGGGCGGCGTTGGT
GGAGGAAGAAGCCGGCCGCGCGGGGCAGTTGGAGGAAGAGGCCGCAGCAC
GAGCGGAGCAGCTCAGGGCTCTGCAAGAAAAGGCGGGTGTCCCAACAACC
AAAATTGAAGAAAAAAACTTCATCCACGGCATGTATAAAAACGAAGCAAA
AGCGGCGGGTTCTCTTCCGTTTCGTTGCACGGTGCGATCGCAACACACGC
CACCATACATATGCACACCCCGGCATCTCACTGCACCCGACCGGCACCCG
CCCCTGAAAACCCCCCTATCTCTTTGTATAGTATGTACTGGTTGACCGCA
TCAGGTGTTGGAATAGTACGCCCATAGGGAGGTAGGTACTGGGTGGAGAG
AGATCGCAACGGTTTTTAATGTGAATAAACAACAACAACAACTACTGGTA
CGCTTGCTCTTCGCCCAGGTGGAATCGCTCGAGACCGGCCACGAAGCGCT
CGCCGCGCGCACCAAGGCCGCCGCGCAAGCCGAGAAGGAGGCTCTCGCCG
GTCTCGCCGAGGCCCGGGCGCGCGCCAGCAGCGCCGAGCGTTCCGCGGCA
GAGCGTGTGCGGGGGCTCGAGGAAGAGGCGACCCGGCTGCGGCGGCAGCT
GGAGACGGGCGCAGACGCCGCGCAGGCGAGAGAGAGAGAGAGAGTACGAT
ATCGCATCGGTGGCCTTTTTTTTTCTTCCATTTGGCGCACGGCGTTGCGT
CGACGCGATAGGCTTTTAGTGCAGACTCTTCTCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCTCCCCCCCCCCCCCCCTTTTTTAGCGGCGCGCGGGG
GGGGGATGTGTTTTGCGATCGTGCTCTGGGNNNNNNNNNNGGGGGCCTTT
TTTTTTCTTCCATGGGGCGCAGGGGGTGGGGGGGGCGGGAGGGGCTTTTA
GGGCGGGCTCGGCCCCCCCCCCCCCCCACCCTCCCCTGCCGTTTTACCAC
CGCGACCTGTTTAGTAAGAAGCGCTGTGGGCCAATATGCTGTGCCGACAC
TTCGGCTCGTTGAAAAAGTCATCGACACCTGGAAAACTGAGCCTTGCTCG
TTTCATGGGTACATATATATATGCTCACCTTACCCGACCCCCTGCGGCGA
TGGTTGTTGTTCCTCGGCCGCGAGCAGGTGGAAGCCATGCGAGAGAAGAT
TCGAATCCTGGAAGGTATCTGGGGGGATGATGGTAGCGGCGGCGGCGAGG
GGGGGGGGGGGGGGGGGACGCCGACGAGTCGCAGGGGCCGAAGACGAGGC
GGTGCCGCCGTCGAGCGAGACGCTGGAGAAGGAACTGAACGAACCGAGTC
AGAAGCAAGGGCAACAGCAGCAGCAGCAGCAGCACGAGACGGAGGGTCGG
AAGGGGGAAGGTCGCGGCGTGGCGTCCGGCCGGGGAGACCGGGGGGTAGG
GACGTCGGCGGTAGCGACAGCGCCTCGGACAGTGGTGGTGGTGGTGGTGG
TGGTGAGGGTGAGAGTGAGGACGTCGGTGCTTCGGTGGCGGGTGGAGCGG
GGGCGGGGGCGGAGAGCGGAGAGGCGGCGGCGAGGGAGGGCGGGGGTGCG
GATGCGGACGCGGATGCAGATGCGGGGGTGGACGCCTGGTTGATCTCGTA
CAATCGGCGGCTCAAGAGCGAGCTGGAGCGGTTGAGGGAGAGGACGAGGC
AGGCCGAGGATAGGTGAGATATGTTCGGGGTTAAACAACGGGGTTTGCCG
GTCGGGGTGCCGCGCTGTATGGATGTATGTAGCCTGCCTCTGAATGAAGC
GCTAAACGAAGGTTTTCGAGAAGTCAACTAACTGCATGAACCCGCCGATG
ACATCGGGCACGCAGAGTTCACAAGCAGCACTCGTGCACGGCCTCGGCCC
TTTTGAGATTTGGTCATGCCCCCCGCTATCTCCGCGTATTTCTGCTTTGA
GATTGGTCGTGCCCCCCGCTTATCTCCGCGTATTTCTGTTTTTGAGGCTG
CTCTTGACCATGTTAAACCATGGTCTACCGTAGGCAGGCGGCATGCGTGC
GCCCTGAACCACGCGGTACAATATCGGCTTCAAGTGATCCCAACTCTCTG
TGTGAGCGAGCGAGTGGCGCGAGAACAGCCGCCGTTATCTGCCCGCCATA
CCTACCCATAGCGGCGGTAACGCGGAGCTGGTTGCCCTTGCGCTCGGGAT
ACTAACCGACCCGCCCCTTTCGACGCGACAACCACAAACGCGCTCCTTTT
CGCTTCCCCTACATACATACATACATACATAAATCATGGCACCGCAAATT
AACTCGGCAGGCTCGAGAGCGTGGAGGGGCAGCGGGTCGCGGAGGGCGCC
GAGCTGGCGGACCGCAGGCGGGACGTGAAGCGCCTCGAGCAGGACCTCGT
CGACGCCCACCAGGTCGTGGAGGCGGGGAAGACGATGCTCAGAGCCTTTC
AGAGCGGCCCGGTGGCCCGGCAGTTCGGCAAGCTGGTCGGCCGAGGTGGA
GGGGGGGGCTCAGCAGCGGCGCCGGCGACAGGTGCCGGTGCCGGCGACGA
CGCGCGGGGAGGGCTGGAGGGGGACGACTACTACCTGGAAGGCGTCGAGG
ACGGAGGGGCGGAGGAAGGTGACCCCGGGTCCGAGGGCTTCAGCGCGGCG
GACAGGCTGTTGGGCGCGGTGAGCGGACGCGTTGCATGGAGAGAAAGGGG
GTCGTTTTGGTTCGCGCGCCGGGGGGGGGGGGGGGGGGGGGGGGCGGAGG
AGGCGGGCAGTTGTGCCGTGATGACAGAGCAAGCAGGCTTGGATGTTACT
CTGTATGTACACACATAGGTGACGAGGGTGTGCTTAGAGCGAGGCGACAA
CAGCAGCGGCAGAGAGGCAAAGGCGAGGGCGAATCCTCAAAACCGTGCTT
GCTGTGAAGCAGTCCATAACAAATGCGTAACACATCCACACACAGTAGCA
GCAGCAGCAGCAACCACCACCACCACCACCACCACCACCCCAACAGGTGA
AGCGGCAGCGGGAGCGGTTTCGCAAAGAGGCCCTGCGGCGGGAACGAGAG
GCGTCTATCGCCAAGGGCAACGCGGAGCAGCTCACCCGCGACAACCAGGA
CTTGAGGAGGGAGAACATGCACCTGTACAAAAAGATCAGGCAAGCAAACG
CGTGGCGCCCGCCCGGTTTTCGGGGGGAGGGGGGGGGGATCAGAAGCGCC
TGAAAACATAATTTTCATATTGCGTGCGTGCAGCAGCACGGCGCTGCCCG
ATTGGTATACACTGGCGTATCGACTTGTTGCTAACTCTTTTTTTTTTTTT
TCTTCACATTTATTTCCAGTGCTCGATGGGCTGCCTCCCTGTCACGAGGA
TATCTTCCCAGAGTACTAAACCGTGGTCACACAGAAGGGTTCCTTTCCCC
AAGCCCCCCACTCCCCCCATTTGCGGTGCTTGCCTAAGATTTTTGTCGCT
ACATAGAAGGGTTCAGCCGTCCCTTTCCCTCGCCGACGGTGAGGTCGAAG
TTTGCATTTGCGGTGCTTGCCTAAGATTTTTGTCGCTACATAGAAGGGTT
CAGCCGTCCCTTTCCCTCGCCGACGGTGAGGTCGAAGTTTGTTGCACACA
CGGTGAGCGCTAAATATCCACTGACAGGGACGGAAGCGAGAGAAAAAAAC
TCACTTCGCAAGAAAAAGCCGCTTCCGCTGAGACTTAACTCACGGCGCAC
CTGATCGAAGGGGTTCGGGGGTACCAACTAGACCACCGGGGCGACCAGCC
TGCTGGGTGTTGAAAATTTGCTCTGCATGCTCGTTCGCCGTGTTCGGGCT
CGTCGAAAGAGCGATGCTGTGTGTATGTAAATACGTAGCTCGCAGCAGTT
TCCCTATGCTCCGCTAACGGCCGCCGTCGTTGTCTGAAGACCAGGCTCGC
CGTGAGCTCTCGTTTCTCTCTCCCGTTCCTCCTGCTGACGCTGGTGCTTT
TTTTCCTTGTCGGCAGGTTTGTTATGAGCTACGGCGGAAAGGGAGGGGGG
GGGGCGGGCTTGGATGATGGGGTTGGGGAGGGAGAGCGGGATACGGAGAG
CAAGTACGAGAAGATCTACGAGGCGGGCCTGGACCCTTTCAAGGAGTTCG
ACTCCCGTAAGTGTTTTTGTGCCCCGCCTACATGTGTAGTTCAGAGACAT
CGATTTTCCTGGGGTTCCGTCCGTTCAGGGTATGTGTGGATGACAGGTGT
AAGAGATGGTAACCAGAAGTACACTACCAACGAGTATAGGAAGATCGTAT
CTTTATCGGAGTATCATATCGACCCGTTGGATCGACAAGATACAAGATGG
AAACTCGAATCTTCCAGACAACAACTTGCCGAGACGAGAGCGGAGAGTCT
TCGACGCCTCGCTCTGGTCCGGCACTCTTGTGCCTCTCCTCTTGCCGAAA
TATCACGAAAGGAAACTAGCCGCGCCTGGCAGTGGGTGAATACTGCCACG
ACCTGGGCCACCTTCTAAGGACGGTAACCTGTGTCTTCATACTTCATACT
TATTTATTTTCCTCCCATTATTGGCTTATTCGTCGTCTGCCCCATTGGCC
CGCTTCCTCCACTACGACTATTTAGCTAGACGACCCAAGCGGGGTCACAT
GTGATCGTGGGCAACACCAATCCGTCGTCCAAGAGATCTTCGGTCGTGCC
TGTTTTGAAATTCCGCCGCAGGTTTTTTAGTAGTCGCGTATGTAACTGCG
TGCCACAAATCCGTTTTCTCACACAAATCATTGTTTCTCTCCGCACACCC
ACACCTTTCGGGTGCGCCACGCAACACAAGGCTTTTGGTCGATGCCTGGG
TTTGCAAAGCTCTCGACAACGTACTGATTTTTCTCGAGTCGACGGATGGC
CGTTGATTGGCTGCTGTGGTTGTATCGAAAACGCTTGGCAGATAGGACAT
TTCTCCCTCCTACATATACCTACCTCGCGGAGCCCCTGTCGGCGTTCTTC
TCCCCTGGTGGGATGTAGGCCGGAGGCGGAGGATCGGGTAATATATGAAA
CGTCTGCGGGAAACATCTCCTCTGTATCGGCGGCCCCTCCATAAATTATC
CCGCAACTTCTAACCAACGCTAGCGATGATAATCCTCCCCTGTCACTGGC
TGCAGCAGCCTCAATCTCTAACCCCCCCCCCTCCCCCTTTTTGTCGCATG
CACTTTTTGAACCGCACCCTCCATTTTGTGCACGACTCTGGAGCGCAGAG
GAAAAGGAGACTCGTCGGGGACAAATGGGCTTTCTGGAGAAGGGGCTCTT
CATGGCTTCTGGAACTGTCCTGCGGAGCCGCTTCAGGCGGCACGTGCTGG
TCATTTATCTGCTGGTGGTGCACGCGTTGCTGCTGGTGCTGCCCGGGGGT
GTTGGCGGCGCCACCTCCCCGGGCATTGAAGCCGGGACCGGCGGTGATCA
CTTGATGCCATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1322:232..5644+

>mRNA_L-elsbetiae_contig1322.2510.1 ID=mRNA_L-elsbetiae_contig1322.2510.1|Name=mRNA_L-elsbetiae_contig1322.2510.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3534bp|location=Sequence derived from alignment at L-elsbetiae_contig1322:232..5644+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTCTCCAGCAGGAGGTAGAGCGCCTGGAGGCTAGGGCGGCGTTGGT
GGAGGAAGAAGCCGGCCGCGCGGGGCAGTTGGAGGAAGAGGCCGCAGCAC
GAGCGGAGCAGCTCAGGGCTCTGCAAGAAAAGGCGGGTCAGGTTCTCCAG
CAGGAGGTAGAGCGCCTGGAGGCTAGGGCGGCGTTGGTGGAGGAAGAAGC
CGGCCGCGCGGGGCAGTTGGAGGAAGAGGCCGCAGCACGAGCGGAGCAGC
TCAGGGCTCTGCAAGAAAAGGCGGGTGTGGAATCGCTCGAGACCGGCCAC
GAAGCGCTCGCCGCGCGCACCAAGGCCGCCGCGCAAGCCGAGAAGGAGGC
TCTCGCCGGTCTCGCCGAGGCCCGGGCGCGCGCCAGCAGCGCCGAGCGTT
CCGCGGCAGAGCGTGTGCGGGGGCTCGAGGAAGAGGCGACCCGGCTGCGG
CGGCAGCTGGAGACGGGCGCAGACGCCGCGCAGGCGAGAGAGAGAGAGAG
AGTGGAATCGCTCGAGACCGGCCACGAAGCGCTCGCCGCGCGCACCAAGG
CCGCCGCGCAAGCCGAGAAGGAGGCTCTCGCCGGTCTCGCCGAGGCCCGG
GCGCGCGCCAGCAGCGCCGAGCGTTCCGCGGCAGAGCGTGTGCGGGGGCT
CGAGGAAGAGGCGACCCGGCTGCGGCGGCAGCTGGAGACGGGCGCAGACG
CCGCGCAGGCGAGAGAGAGAGAGAGAGTGGAAGCCATGCGAGAGAAGATT
CGAATCCTGGAAGGTATCTGGGGGGATGATGGTAGCGGCGGCGGCGAGGG
GGGGGGGGGGGGGGGGACGCCGACGAGTCGCAGGGGCCGAAGACGAGGCG
GTGCCGCCGTCGAGCGAGACGCTGGAGAAGGAACTGAACGAACCGAGTCA
GAAGCAAGGGCAACAGCAGCAGCAGCAGCAGCACGAGACGGAGGGTCGGA
AGGGGGAAGGTCGCGGCGTGGCGTCCGGCCGGGGAGACCGGGGGGTAGGG
ACGTCGGCGGTAGCGACAGCGCCTCGGACAGTGGTGGTGGTGGTGGTGGT
GGTGAGGGTGAGAGTGAGGACGTCGGTGCTTCGGTGGCGGGTGGAGCGGG
GGCGGGGGCGGAGAGCGGAGAGGCGGCGGCGAGGGAGGGCGGGGGTGCGG
ATGCGGACGCGGATGCAGATGCGGGGGTGGACGCCTGGTTGATCTCGTAC
AATCGGCGGCTCAAGAGCGAGCTGGAGCGGTTGAGGGAGAGGACGAGGCA
GGCCGAGGATAGGTGGAAGCCATGCGAGAGAAGATTCGAATCCTGGAAGG
TATCTGGGGGGATGATGGTAGCGGCGGCGGCGAGGGGGGGGGGGGGGGGG
GGACGCCGACGAGTCGCAGGGGCCGAAGACGAGGCGGTGCCGCCGTCGAG
CGAGACGCTGGAGAAGGAACTGAACGAACCGAGTCAGAAGCAAGGGCAAC
AGCAGCAGCAGCAGCAGCACGAGACGGAGGGTCGGAAGGGGGAAGGTCGC
GGCGTGGCGTCCGGCCGGGGAGACCGGGGGGTAGGGACGTCGGCGGTAGC
GACAGCGCCTCGGACAGTGGTGGTGGTGGTGGTGGTGGTGAGGGTGAGAG
TGAGGACGTCGGTGCTTCGGTGGCGGGTGGAGCGGGGGCGGGGGCGGAGA
GCGGAGAGGCGGCGGCGAGGGAGGGCGGGGGTGCGGATGCGGACGCGGAT
GCAGATGCGGGGGTGGACGCCTGGTTGATCTCGTACAATCGGCGGCTCAA
GAGCGAGCTGGAGCGGTTGAGGGAGAGGACGAGGCAGGCCGAGGATAGGC
TCGAGAGCGTGGAGGGGCAGCGGGTCGCGGAGGGCGCCGAGCTGGCGGAC
CGCAGGCGGGACGTGAAGCGCCTCGAGCAGGACCTCGTCGACGCCCACCA
GGTCGTGGAGGCGGGGAAGACGATGCTCAGAGCCTTTCAGAGCGGCCCGG
TGGCCCGGCAGTTCGGCAAGCTGGTCGGCCGAGGTGGAGGGGGGGGCTCA
GCAGCGGCGCCGGCGACAGGTGCCGGTGCCGGCGACGACGCGCGGGGAGG
GCTGGAGGGGGACGACTACTACCTGGAAGGCGTCGAGGACGGAGGGGCGG
AGGAAGGTGACCCCGGGTCCGAGGGCTTCAGCGCGGCGGACAGGCTGTTG
GGCGCGGCTCGAGAGCGTGGAGGGGCAGCGGGTCGCGGAGGGCGCCGAGC
TGGCGGACCGCAGGCGGGACGTGAAGCGCCTCGAGCAGGACCTCGTCGAC
GCCCACCAGGTCGTGGAGGCGGGGAAGACGATGCTCAGAGCCTTTCAGAG
CGGCCCGGTGGCCCGGCAGTTCGGCAAGCTGGTCGGCCGAGGTGGAGGGG
GGGGCTCAGCAGCGGCGCCGGCGACAGGTGCCGGTGCCGGCGACGACGCG
CGGGGAGGGCTGGAGGGGGACGACTACTACCTGGAAGGCGTCGAGGACGG
AGGGGCGGAGGAAGGTGACCCCGGGTCCGAGGGCTTCAGCGCGGCGGACA
GGCTGTTGGGCGCGGTGAAGCGGCAGCGGGAGCGGTTTCGCAAAGAGGCC
CTGCGGCGGGAACGAGAGGCGTCTATCGCCAAGGGCAACGCGGAGCAGCT
CACCCGCGACAACCAGGACTTGAGGAGGGAGAACATGCACCTGTACAAAA
AGATCAGGCAAGCAAACGCGTGAAGCGGCAGCGGGAGCGGTTTCGCAAAG
AGGCCCTGCGGCGGGAACGAGAGGCGTCTATCGCCAAGGGCAACGCGGAG
CAGCTCACCCGCGACAACCAGGACTTGAGGAGGGAGAACATGCACCTGTA
CAAAAAGATCAGGCAAGCAAACGCGTTTGTTATGAGCTACGGCGGAAAGG
GAGGGGGGGGGGCGGGCTTGGATGATGGGGTTGGGGAGGGAGAGCGGGAT
ACGGAGAGCAAGTACGAGAAGATCTACGAGGCGGGCCTGGACCCTTTCAA
GGAGTTCGACTCCCGTTTGTTATGAGCTACGGCGGAAAGGGAGGGGGGGG
GGCGGGCTTGGATGATGGGGTTGGGGAGGGAGAGCGGGATACGGAGAGCA
AGTACGAGAAGATCTACGAGGCGGGCCTGGACCCTTTCAAGGAGTTCGAC
TCCCAGGAAAAGGAGACTCGTCGGGGACAAATGGGCTTTCTGGAGAAGGG
GCTCTTCATGGCTTCTGGAACTGTCCTGCGGAGCCGCTTCAGGCGGCACG
TGCTGGTCATTTATCTGCTGGTGGTGCACGCGTTGCTGCTGGTGCTGCCC
GGGGGTGTTGGCGGCGCCACCTCCCCGGGCATTGAAGCCGGGACCGGCGG
TGATCACTTGATGCCATAGAGGAAAAGGAGACTCGTCGGGGACAAATGGG
CTTTCTGGAGAAGGGGCTCTTCATGGCTTCTGGAACTGTCCTGCGGAGCC
GCTTCAGGCGGCACGTGCTGGTCATTTATCTGCTGGTGGTGCACGCGTTG
CTGCTGGTGCTGCCCGGGGGTGTTGGCGGCGCCACCTCCCCGGGCATTGA
AGCCGGGACCGGCGGTGATCACTTGATGCCATAG
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