mRNA_L-elsbetiae_contig13189.2491.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13189.2491.1
Unique NamemRNA_L-elsbetiae_contig13189.2491.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13189.2491.1 vs. uniprot
Match: A0A6H5K4R3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 2.100e-41
Identity = 89/166 (53.61%), Postives = 115/166 (69.28%), Query Frame = -1 
Query:    1 TGPWALMLVVGRRLMRLRLEQGY-------ELAQKWVERAEGEVKEAKASA------ASKDLARAKASLKKAQAEVKEYMPKAIDTTAKKDRERNVRRSPGRVVEPAELGDKAAPFTKYGKNYTSDQLHAMYQRVGRYALGLPSFGPNILRTVHVTTVMTLCYQMG 459
            TGP+A+MLV+GRRLM + L++ Y       +LA++    AEG + +A  S       A +DLA A  SLK+A  EV+ Y P+  +   ++DR RN RR   RV++ AELGDKAAPFTKYGKNY   QL +MY  VG+YALGLP+FGPNILRT+HVTTVMT+CY +G
Sbjct: 1326 TGPFAVMLVIGRRLMTMHLQENYKAACAEQQLAREQQRDAEGRLSKAIDSDEFSEDDARRDLAAASDSLKRADKEVQHYAPRDSEKADQEDRVRNRRRRQARVLQFAELGDKAAPFTKYGKNYNDGQLRSMYLHVGKYALGLPAFGPNILRTIHVTTVMTVCYTLG 1491
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BLAST of mRNA_L-elsbetiae_contig13189.2491.1 vs. uniprot
Match: A0A6H5KG30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG30_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 9.870e-41
Identity = 87/166 (52.41%), Postives = 113/166 (68.07%), Query Frame = -1 
Query:    1 TGPWALMLVVGRRLMRLRLEQGY-------ELAQKWVERAEGEVKEAKASA------ASKDLARAKASLKKAQAEVKEYMPKAIDTTAKKDRERNVRRSPGRVVEPAELGDKAAPFTKYGKNYTSDQLHAMYQRVGRYALGLPSFGPNILRTVHVTTVMTLCYQMG 459
            TGP+A+MLV+GRRLM + L++ Y       +LA++    AEG + +A  S       A +DLA A  SL +A  EV+ Y P+  +   ++D  RN RR   RV++ AELGDKAAPFTKYGKNY   QL +MY  VG+YALGLP+FGPNILRT+HVTTVMT+CY +G
Sbjct:  199 TGPFAVMLVIGRRLMTMHLQENYKAACAEQQLAREQQRDAEGRLSKAIDSDEFSEDDARRDLAAASDSLNRADKEVQHYAPRDSEKADQEDNVRNRRRRQARVLQFAELGDKAAPFTKYGKNYNDGQLRSMYLHVGKYALGLPAFGPNILRTIHVTTVMTVCYTLG 364
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BLAST of mRNA_L-elsbetiae_contig13189.2491.1 vs. uniprot
Match: D7FKZ5_ECTSI (PHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ5_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 3.690e-29
Identity = 66/152 (43.42%), Postives = 99/152 (65.13%), Query Frame = -1 
Query:    1 GPWALMLVVGRRLMRLRLEQGYELAQKWVERAEGEVKEAKASAASKDLARAKASLKKAQAEVKEYMPKAIDTTAKKDRERNVRRSPGRVVEPAELGDKAAPFTKYGKNYTSDQLHAMYQRVGRYALGLPSFGPNILRTVHVTTVMTLCYQMG 456
            GP+A+M+V+GRRLMR  LE  Y+ A+  V++A+  + +A  ++    + +A+  L  A+ ++ EY P   +   ++DR +  +R   R +  AELGDK   FT YGKNY    L+ MY+ VG Y LGLP+FGPNILR++HVT VM +CY++G
Sbjct: 1434 GPYAVMMVIGRRLMRKHLEANYKDARSQVQKAQTNLADAVRNSTKDGVVKARKILAAAERQLTEYAPTESERKNEEDRAKAEKRDQ-REIGYAELGDKVCTFTAYGKNYDQSMLNDMYKYVGEYYLGLPAFGPNILRSIHVTDVMEVCYKIG 1584
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BLAST of mRNA_L-elsbetiae_contig13189.2491.1 vs. uniprot
Match: A0A6H5JMD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMD7_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.110e-10
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = -1 
Query:    1 MYQRVGRYALGLPSFGPNILRTVHVTTVMTLCYQMG 108
            MY  VG+YALGLP+FGPNILRT+HVTTVMT+CY +G
Sbjct:    1 MYLHVGKYALGLPAFGPNILRTIHVTTVMTVCYTLG 36
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13189.2491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K4R3_9PHAE2.100e-4153.61PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KG30_9PHAE9.870e-4152.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKZ5_ECTSI3.690e-2943.42PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JMD7_9PHAE3.110e-1077.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13189contigL-elsbetiae_contig13189:1737..2207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size471
Cds size360
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815496.7191281-UTR-L-elsbetiae_contig13189:1736..18471622815496.7191281-UTR-L-elsbetiae_contig13189:1736..1847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13189 1737..1847 +
1691682926.9485643-UTR-L-elsbetiae_contig13189:1736..18471691682926.9485643-UTR-L-elsbetiae_contig13189:1736..1847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13189 1737..1847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815496.729247-CDS-L-elsbetiae_contig13189:1847..22071622815496.729247-CDS-L-elsbetiae_contig13189:1847..2207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13189 1848..2207 +
1691682926.9575024-CDS-L-elsbetiae_contig13189:1847..22071691682926.9575024-CDS-L-elsbetiae_contig13189:1847..2207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13189 1848..2207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13189.2491.1prot_L-elsbetiae_contig13189.2491.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13189 1848..2207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13189.2491.1

>prot_L-elsbetiae_contig13189.2491.1 ID=prot_L-elsbetiae_contig13189.2491.1|Name=mRNA_L-elsbetiae_contig13189.2491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MELIARVVLSVLGERSRLVTKLGRFHNPPRTTTDISLSVLFGCCVYSLGH
VLFHLCLSLLERCFSSRQVFARRARLRLLHFALGTLHPLLRQLVALFEAQ
PHQPSPDYEHQRPGTCEMK*
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mRNA from alignment at L-elsbetiae_contig13189:1737..2207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13189.2491.1 ID=mRNA_L-elsbetiae_contig13189.2491.1|Name=mRNA_L-elsbetiae_contig13189.2491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=471bp|location=Sequence derived from alignment at L-elsbetiae_contig13189:1737..2207+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCATCTGGTAACAGAGCGTCATAACTGTCGTGACATGGACGGTCCGTA
ATATATTCGGCCCGAACGAGGGTAAACCCAGGGCATACCGACCCACACGT
TGATACATGGCATGGAGCTGATCGCTCGTGTAGTTCTTTCCGTACTTGGT
GAACGGAGCCGCCTTGTCACCAAGCTCGGCAGGTTCCACAACCCTCCCCG
GACTACGACGGACATTTCTCTCTCTGTCCTTTTTGGCTGTTGTGTCTATA
GCCTTGGGCATGTACTCTTTCACCTCTGCTTGAGCCTTCTTGAGAGATGC
TTTAGCTCTCGCCAGGTCTTTGCTCGCCGCGCTCGCCTTCGCCTCCTTCA
CTTCGCCCTCGGCACGCTCCACCCACTTTTGCGCCAGCTCGTAGCCCTGT
TCGAGGCGCAACCTCATCAACCGTCTCCCGACTACGAGCATCAACGCCCA
GGGACCTGTGAAATGAAATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13189:1737..2207+

>mRNA_L-elsbetiae_contig13189.2491.1 ID=mRNA_L-elsbetiae_contig13189.2491.1|Name=mRNA_L-elsbetiae_contig13189.2491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig13189:1737..2207+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCTGATCGCTCGTGTAGTTCTTTCCGTACTTGGTGAACGGAGCCG
CCTTGTCACCAAGCTCGGCAGGTTCCACAACCCTCCCCGGACTACGACGG
ACATTTCTCTCTCTGTCCTTTTTGGCTGTTGTGTCTATAGCCTTGGGCAT
GTACTCTTTCACCTCTGCTTGAGCCTTCTTGAGAGATGCTTTAGCTCTCG
CCAGGTCTTTGCTCGCCGCGCTCGCCTTCGCCTCCTTCACTTCGCCCTCG
GCACGCTCCACCCACTTTTGCGCCAGCTCGTAGCCCTGTTCGAGGCGCAA
CCTCATCAACCGTCTCCCGACTACGAGCATCAACGCCCAGGGACCTGTGA
AATGAAATAGATGGAGCTGATCGCTCGTGTAGTTCTTTCCGTACTTGGTG
AACGGAGCCGCCTTGTCACCAAGCTCGGCAGGTTCCACAACCCTCCCCGG
ACTACGACGGACATTTCTCTCTCTGTCCTTTTTGGCTGTTGTGTCTATAG
CCTTGGGCATGTACTCTTTCACCTCTGCTTGAGCCTTCTTGAGAGATGCT
TTAGCTCTCGCCAGGTCTTTGCTCGCCGCGCTCGCCTTCGCCTCCTTCAC
TTCGCCCTCGGCACGCTCCACCCACTTTTGCGCCAGCTCGTAGCCCTGTT
CGAGGCGCAACCTCATCAACCGTCTCCCGACTACGAGCATCAACGCCCAG
GGACCTGTGAAATGAAATAG
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