mRNA_L-elsbetiae_contig1316.2472.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1316.2472.1
Unique NamemRNA_L-elsbetiae_contig1316.2472.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1316.2472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1316contigL-elsbetiae_contig1316:20355..21195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size842
Cds size573
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.281047-UTR-L-elsbetiae_contig1316:20354..206221622815495.281047-UTR-L-elsbetiae_contig1316:20354..20622Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1316 20355..20622 +
1691682926.2513127-UTR-L-elsbetiae_contig1316:20354..206221691682926.2513127-UTR-L-elsbetiae_contig1316:20354..20622Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1316 20355..20622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.293302-CDS-L-elsbetiae_contig1316:20622..211951622815495.293302-CDS-L-elsbetiae_contig1316:20622..21195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1316 20623..21195 +
1691682926.2680352-CDS-L-elsbetiae_contig1316:20622..211951691682926.2680352-CDS-L-elsbetiae_contig1316:20622..21195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1316 20623..21195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1316.2472.1prot_L-elsbetiae_contig1316.2472.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1316 20623..21195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1316.2472.1

>prot_L-elsbetiae_contig1316.2472.1 ID=prot_L-elsbetiae_contig1316.2472.1|Name=mRNA_L-elsbetiae_contig1316.2472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=191bp
MLKKACCIVVSINPPRRRPGKLITFWREASRESYSSRLHTHQTHKFSGMY
VCLGFERDDLTWPRRGARAAWRSTYLRMYGVGQNRFAKLIRGFACGGGEK
LGATKLRNNSSLYLVCTAFPVLRQSLLPSHRGFRAILILCLSSPLLPFFL
SRAPLSAHTPFAFFSLLCSVCASHTRMAWHGMAWQTHTHKR
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mRNA from alignment at L-elsbetiae_contig1316:20355..21195+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1316.2472.1 ID=mRNA_L-elsbetiae_contig1316.2472.1|Name=mRNA_L-elsbetiae_contig1316.2472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=841bp|location=Sequence derived from alignment at L-elsbetiae_contig1316:20355..21195+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGATTGCCGTTCGGCCGACCTGCTCACCCGCTTCTGAACCCGGTGTA
ATCAGTTAATGCCTCCTGTGGGGAGAAAAAAGAGCTTTATTTTGTGTTGT
AAAAAGCTTGCTCTAAATAATGTCAAACCCCCACGTGGAGAACCCGGGGA
AGCTGAATACTAAACATTATTTTGTGTTGAAAAAAGCTTGCCGCAGTTTC
AAACCCCCGCGTAGTACAATAGAGAACCCCCGGGAAGCTATACTAAAAAT
TCGTGCAACATTATTTTTATGCTGAAAAAAGCTTGCTGTATTGTAGTTTC
AATCAACCCCCCGCGTAGAAGACCCGGGAAGCTAATTACTTTTTGGCGCG
AGGCGTCACGCGAAAGCTACAGCAGCAGGCTACATACGCATCAGACACAT
AAATTCTCCGGTATGTATGTTTGCCTGGGATTCGAGCGTGACGATTTGAC
ATGGCCTAGACGTGGGGCTCGGGCCGCGTGGAGAAGTACGTACTTGCGTA
TGTACGGTGTGGGACAGAATCGCTTTGCAAAGTTGATTCGGGGTTTCGCG
TGTGGGGGGGGCGAAAAGTTGGGAGCAACAAAGCTAAGGAACAACTCCAG
TCTCTACCTTGTATGCACAGCCTTTCCTGTCCTGCGCCAGTCCTTGTTGC
CCTCTCACCGGGGTTTCCGTGCAATATTAATATTGTGCTTATCCTCTCCC
CTCCTTCCGTTTTTTTTGTCCCGCGCGCCCCTCTCGGCGCACACGCCCTT
TGCTTTCTTTTCCTTGCTCTGCTCGGTGTGTGCGTCGCACACGCGCATGG
CATGGCATGGCATGGCATGGCAAACACACACACACAAACGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1316:20355..21195+

>mRNA_L-elsbetiae_contig1316.2472.1 ID=mRNA_L-elsbetiae_contig1316.2472.1|Name=mRNA_L-elsbetiae_contig1316.2472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig1316:20355..21195+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGAAAAAAGCTTGCTGTATTGTAGTTTCAATCAACCCCCCGCGTAG
AAGACCCGGGAAGCTAATTACTTTTTGGCGCGAGGCGTCACGCGAAAGCT
ACAGCAGCAGGCTACATACGCATCAGACACATAAATTCTCCGGTATGTAT
GTTTGCCTGGGATTCGAGCGTGACGATTTGACATGGCCTAGACGTGGGGC
TCGGGCCGCGTGGAGAAGTACGTACTTGCGTATGTACGGTGTGGGACAGA
ATCGCTTTGCAAAGTTGATTCGGGGTTTCGCGTGTGGGGGGGGCGAAAAG
TTGGGAGCAACAAAGCTAAGGAACAACTCCAGTCTCTACCTTGTATGCAC
AGCCTTTCCTGTCCTGCGCCAGTCCTTGTTGCCCTCTCACCGGGGTTTCC
GTGCAATATTAATATTGTGCTTATCCTCTCCCCTCCTTCCGTTTTTTTTG
TCCCGCGCGCCCCTCTCGGCGCACACGCCCTTTGCTTTCTTTTCCTTGCT
CTGCTCGGTGTGTGCGTCGCACACGCGCATGGCATGGCATGGCATGGCAT
GGCAAACACACACACACAAACGCATGCTGAAAAAAGCTTGCTGTATTGTA
GTTTCAATCAACCCCCCGCGTAGAAGACCCGGGAAGCTAATTACTTTTTG
GCGCGAGGCGTCACGCGAAAGCTACAGCAGCAGGCTACATACGCATCAGA
CACATAAATTCTCCGGTATGTATGTTTGCCTGGGATTCGAGCGTGACGAT
TTGACATGGCCTAGACGTGGGGCTCGGGCCGCGTGGAGAAGTACGTACTT
GCGTATGTACGGTGTGGGACAGAATCGCTTTGCAAAGTTGATTCGGGGTT
TCGCGTGTGGGGGGGGCGAAAAGTTGGGAGCAACAAAGCTAAGGAACAAC
TCCAGTCTCTACCTTGTATGCACAGCCTTTCCTGTCCTGCGCCAGTCCTT
GTTGCCCTCTCACCGGGGTTTCCGTGCAATATTAATATTGTGCTTATCCT
CTCCCCTCCTTCCGTTTTTTTTGTCCCGCGCGCCCCTCTCGGCGCACACG
CCCTTTGCTTTCTTTTCCTTGCTCTGCTCGGTGTGTGCGTCGCACACGCG
CATGGCATGGCATGGCATGGCATGGCAAACACACACACACAAACGC
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