mRNA_L-elsbetiae_contig13036.2407.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13036.2407.1
Unique NamemRNA_L-elsbetiae_contig13036.2407.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13036.2407.1 vs. uniprot
Match: D8LN71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN71_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 3.350e-43
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1
Query:    4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENV 234
            VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENV
Sbjct:  118 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENV 194          
BLAST of mRNA_L-elsbetiae_contig13036.2407.1 vs. uniprot
Match: A0A6H5KEQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEQ7_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 3.360e-43
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1
Query:    4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENV 234
            VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENV
Sbjct:  284 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENV 360          
BLAST of mRNA_L-elsbetiae_contig13036.2407.1 vs. uniprot
Match: A0A7R9VVS4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VVS4_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.310e-27
Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENV 234
            V  +QP+ASQGW+E+ KLEEE GDL +C+ +L  GL++CEY+E LL KA+K EER G+L  AR+LL+RLKHVGIE V
Sbjct:   36 VCTLQPYASQGWLEFSKLEEESGDLDKCACLLNEGLSYCEYNENLLTKAIKHEERMGDLTRARQLLARLKHVGIEQV 112          
BLAST of mRNA_L-elsbetiae_contig13036.2407.1 vs. uniprot
Match: A0A7S0PWJ1_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PWJ1_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.870e-27
Identity = 51/78 (65.38%), Postives = 65/78 (83.33%), Query Frame = 1
Query:    1 QVTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENV 234
            QV K+QP+ASQGW+EY KLEEE G L  C++ILRRGL +C++SE LL +A+K EE+ GNL GAR+LL+RLKHVGI+ V
Sbjct:  762 QVCKLQPYASQGWLEYSKLEEECGHLKTCARILRRGLEYCKFSENLLTRAIKHEEKMGNLGGARQLLARLKHVGIDKV 839          
BLAST of mRNA_L-elsbetiae_contig13036.2407.1 vs. uniprot
Match: A0A7S4ITD3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ITD3_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.620e-25
Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENV 234
            V  +QP+ASQGW+E+ KLEEE G+L RC+ +L  GL++CEY+E LL KA+K EER GNL  AR+LL+RLKHVGIE V
Sbjct: 1084 VCTLQPYASQGWLEFSKLEEESGNLERCASLLSEGLSYCEYNENLLTKAIKHEERMGNLTRARQLLARLKHVGIEKV 1160          
BLAST of mRNA_L-elsbetiae_contig13036.2407.1 vs. uniprot
Match: A0A448YUD9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUD9_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.020e-25
Identity = 49/78 (62.82%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    1 QVTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENV 234
            QV K+QP+ASQGW+E+ KLEEE G+++ C++IL  GL +CEYSE+LL +A+K EE+ GNL  ARE L+RLKHVGIE V
Sbjct: 1062 QVYKLQPYASQGWLEFSKLEEECGNMNACAKILSAGLEYCEYSESLLSRAIKHEEKRGNLGRAREFLARLKHVGIEKV 1139          
BLAST of mRNA_L-elsbetiae_contig13036.2407.1 vs. uniprot
Match: A0A1E7FB42_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FB42_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.540e-25
Identity = 49/78 (62.82%), Postives = 63/78 (80.77%), Query Frame = 1
Query:    1 QVTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENV 234
            QV  +QP+ASQGW+E+ KLEEE G+++ C++IL  GL +CEYSE LL +A+K EE+ GN+  ARELLSRLKHVGIE V
Sbjct:  203 QVYTLQPYASQGWLEFSKLEEECGNMNACAKILFAGLEYCEYSENLLTRAIKHEEKRGNISRARELLSRLKHVGIEKV 280          
BLAST of mRNA_L-elsbetiae_contig13036.2407.1 vs. uniprot
Match: A0A7S4PH40_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4PH40_9EUKA)

HSP 1 Score: 103 bits (256), Expect = 6.800e-25
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    1 QVTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIE 228
            QV +MQPFASQGW+E+ K+EEE GD+ RC ++L RGL FC Y+E LL+K +K +ER GN+  AR LLSRLK V ++
Sbjct:   85 QVHRMQPFASQGWLEHAKMEEECGDMERCGRVLNRGLFFCPYNENLLVKGIKHQERIGNIQAARALLSRLKRVTVD 160          
BLAST of mRNA_L-elsbetiae_contig13036.2407.1 vs. uniprot
Match: B7FTG6_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FTG6_PHATC)

HSP 1 Score: 105 bits (261), Expect = 1.390e-24
Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENV 234
            V + QP+ASQGW+EY KLEEE G ++R + IL  GL +CEYSE LL +AVK +E+ GN++GARELL+RLKHVGI+ V
Sbjct:  224 VCQQQPYASQGWLEYSKLEEECGHMNRVTNILHAGLEYCEYSENLLTRAVKHQEKMGNVNGARELLARLKHVGIDKV 300          
BLAST of mRNA_L-elsbetiae_contig13036.2407.1 vs. uniprot
Match: A0A7S4DG20_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG20_HETAK)

HSP 1 Score: 100 bits (249), Expect = 3.270e-24
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENV 234
            V ++QP+A+QGW+EY KLEEE G L  CS+IL RGL FC YSE+LLIKA+K  ER G L  AR LL+RLK  G+E V
Sbjct:   93 VCRLQPYAAQGWLEYAKLEEEGGHLETCSRILHRGLMFCHYSESLLIKAIKHFERLGQLRPARVLLARLKRAGVEKV 169          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13036.2407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN71_ECTSI3.350e-43100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEQ7_9PHAE3.360e-43100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9VVS4_9STRA2.310e-2762.34Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S0PWJ1_9STRA3.870e-2765.38Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A7S4ITD3_9STRA1.620e-2563.64Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A448YUD9_9STRA3.020e-2562.82Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7FB42_9STRA5.540e-2562.82Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S4PH40_9EUKA6.800e-2559.21Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
B7FTG6_PHATC1.390e-2462.34Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
A0A7S4DG20_HETAK3.270e-2462.34Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13036contigL-elsbetiae_contig13036:550..783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue3.4e-35
Seed eggNOG ortholog2880.D8LN71
Hectar predicted targeting categoryother localisation
EggNOG OGs28JG8@1,2QRVD@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-05_003750.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size234
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.7701461-CDS-L-elsbetiae_contig13036:549..7711622815486.7701461-CDS-L-elsbetiae_contig13036:549..771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13036 550..771 -
1691682921.6242142-CDS-L-elsbetiae_contig13036:549..7711691682921.6242142-CDS-L-elsbetiae_contig13036:549..771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13036 550..771 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.8307822-UTR-L-elsbetiae_contig13036:771..7831622815486.8307822-UTR-L-elsbetiae_contig13036:771..783Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13036 772..783 -
1691682921.6350682-UTR-L-elsbetiae_contig13036:771..7831691682921.6350682-UTR-L-elsbetiae_contig13036:771..783Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13036 772..783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13036.2407.1prot_L-elsbetiae_contig13036.2407.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13036 550..771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13036.2407.1

>prot_L-elsbetiae_contig13036.2407.1 ID=prot_L-elsbetiae_contig13036.2407.1|Name=mRNA_L-elsbetiae_contig13036.2407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=74bp
MQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQE
ERAGNLDGARELLSRLKHVGIENV
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mRNA from alignment at L-elsbetiae_contig13036:550..783-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13036.2407.1 ID=mRNA_L-elsbetiae_contig13036.2407.1|Name=mRNA_L-elsbetiae_contig13036.2407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=234bp|location=Sequence derived from alignment at L-elsbetiae_contig13036:550..783- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGACCAAGATGCAGCCGTTCGCGTCCCAGGGGTGGGTGGAGTACTG CAAGCTCGAGGAGGAGTTCGGCGACCTCAGCAGGTGCTCCCAGATCCTGC GGCGGGGGCTGACCTTCTGCGAGTACTCGGAGACCCTGCTGATCAAGGCC GTGAAGCAGGAGGAGAGGGCCGGGAACCTGGACGGGGCGAGGGAGCTGCT CAGCCGCCTCAAGCACGTCGGCATCGAGAACGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13036:550..783-

>mRNA_L-elsbetiae_contig13036.2407.1 ID=mRNA_L-elsbetiae_contig13036.2407.1|Name=mRNA_L-elsbetiae_contig13036.2407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig13036:550..783- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCCGTTCGCGTCCCAGGGGTGGGTGGAGTACTGCAAGCTCGAGGA
GGAGTTCGGCGACCTCAGCAGGTGCTCCCAGATCCTGCGGCGGGGGCTGA
CCTTCTGCGAGTACTCGGAGACCCTGCTGATCAAGGCCGTGAAGCAGGAG
GAGAGGGCCGGGAACCTGGACGGGGCGAGGGAGCTGCTCAGCCGCCTCAA
GCACGTCGGCATCGAGAACGTGATGCAGCCGTTCGCGTCCCAGGGGTGGG
TGGAGTACTGCAAGCTCGAGGAGGAGTTCGGCGACCTCAGCAGGTGCTCC
CAGATCCTGCGGCGGGGGCTGACCTTCTGCGAGTACTCGGAGACCCTGCT
GATCAAGGCCGTGAAGCAGGAGGAGAGGGCCGGGAACCTGGACGGGGCGA
GGGAGCTGCTCAGCCGCCTCAAGCACGTCGGCATCGAGAACGTG
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