mRNA_L-elsbetiae_contig13030.2404.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13030.2404.1
Unique NamemRNA_L-elsbetiae_contig13030.2404.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13030.2404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13030contigL-elsbetiae_contig13030:2371..3385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size305
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.4477968-CDS-L-elsbetiae_contig13030:2372..25481622815486.4477968-CDS-L-elsbetiae_contig13030:2372..2548Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13030 2373..2548 -
1691682921.4787164-CDS-L-elsbetiae_contig13030:2372..25481691682921.4787164-CDS-L-elsbetiae_contig13030:2372..2548Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13030 2373..2548 -
1622815486.461211-CDS-L-elsbetiae_contig13030:3258..33851622815486.461211-CDS-L-elsbetiae_contig13030:3258..3385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13030 3259..3385 -
1691682921.4936972-CDS-L-elsbetiae_contig13030:3258..33851691682921.4936972-CDS-L-elsbetiae_contig13030:3258..3385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13030 3259..3385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13030.2404.1prot_L-elsbetiae_contig13030.2404.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13030 2373..3385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13030.2404.1

>prot_L-elsbetiae_contig13030.2404.1 ID=prot_L-elsbetiae_contig13030.2404.1|Name=mRNA_L-elsbetiae_contig13030.2404.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
GAFGAAPAPATGGLFGATAAPAPAATGFGFGAAAAAPAPAATGFGFGAST
AAAPAPAAGGIFGAATGFGAATPAPAAAGGGLFGSATVAPAAAGAVTFGA
T
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mRNA from alignment at L-elsbetiae_contig13030:2371..3385-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13030.2404.1 ID=mRNA_L-elsbetiae_contig13030.2404.1|Name=mRNA_L-elsbetiae_contig13030.2404.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1015bp|location=Sequence derived from alignment at L-elsbetiae_contig13030:2371..3385- (Laminarionema elsbetiae ELsaHSoW15)
GGGGCGTTCGGCGCAGCGCCCGCCCCCGCCACCGGTGGGCTGTTCGGCGC
GACGGCGGCACCGGCACCCGCGGCAACAGGGTTTGGCTTCGGGGCTGCGG
CGGCGGCTCCGGCGCCGGCAGCAACAGGTTAGAAGTAAAACCGTTGACTT
GTCGTGCCGCTAAAAAATGCAAGTTCGCCCCCCCCCCCCCCTCCGTGCCC
CGCGCGCCCCTCGCGCCCCGCGCCCCCTTAAACGAGTATGTAGCCCGCGG
GATGATAACATTGTGTAGAGTGCCAACTGCGACTTTGTATATTTCGCACA
CGAGAGGGCACAAGCACTCGGCGTAATGCGGGGCAAGGCACCGAACAAGA
CAATCAATGATGTATGTGTACGCAGGTGACGGTTCCACTCACACCACCAT
TTTATTTATGCAAAAAACACCGGCAGCAGCCGTTGTTTGCGCGCGTGCAG
ACAAAGCGACAGCGAACAATTGTCAAGACTTTTTTTTTTGTATATAGGTA
TAATTTATCTATCGTGTAATAAAATACCCTCTGTCCCTCGTCTCCCGGGG
AAAGAGCATCGAACTTTTTCGCCGTTATTGTGTGGTACTCCGTGGCGGTA
TGTAGTATAGCACCTGGTTAGAACTAGTGTCGTTATTATTTACGGGAAAA
CAGCGCGAACAGCAGCGATCTCTCTCTCTCTCGTGCGCGGGGTAGATGGA
TGCCGGGGGTTATTCGCCCTTTTGGCCAGGAGCTAAAGACGACCAGGCGG
TCTCGTCGTGGGTGCGGCCTGAGCCACATGGTTCTTCTCTCCTTCACACC
CCCCCGCCCAAAACTAACCGTTCGCGGATGATGACAGGTTTCGGCTTCGG
CGCGTCGACAGCCGCCGCGCCTGCTCCCGCAGCCGGCGGGATTTTCGGCG
CCGCCACCGGGTTCGGCGCCGCAACACCAGCGCCGGCGGCGGCGGGGGGC
GGGCTGTTCGGATCAGCGACGGTGGCGCCCGCCGCCGCGGGTGCCGTCAC
GTTCGGGGCGACCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13030:2371..3385-

>mRNA_L-elsbetiae_contig13030.2404.1 ID=mRNA_L-elsbetiae_contig13030.2404.1|Name=mRNA_L-elsbetiae_contig13030.2404.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig13030:2371..3385- (Laminarionema elsbetiae ELsaHSoW15)
GGGGCGTTCGGCGCAGCGCCCGCCCCCGCCACCGGTGGGCTGTTCGGCGC
GACGGCGGCACCGGCACCCGCGGCAACAGGGTTTGGCTTCGGGGCTGCGG
CGGCGGCTCCGGCGCCGGCAGCAACAGGGGGCGTTCGGCGCAGCGCCCGC
CCCCGCCACCGGTGGGCTGTTCGGCGCGACGGCGGCACCGGCACCCGCGG
CAACAGGGTTTGGCTTCGGGGCTGCGGCGGCGGCTCCGGCGCCGGCAGCA
ACAGGTTTCGGCTTCGGCGCGTCGACAGCCGCCGCGCCTGCTCCCGCAGC
CGGCGGGATTTTCGGCGCCGCCACCGGGTTCGGCGCCGCAACACCAGCGC
CGGCGGCGGCGGGGGGCGGGCTGTTCGGATCAGCGACGGTGGCGCCCGCC
GCCGCGGGTGCCGTCACGTTCGGGGCGACCGTTTCGGCTTCGGCGCGTCG
ACAGCCGCCGCGCCTGCTCCCGCAGCCGGCGGGATTTTCGGCGCCGCCAC
CGGGTTCGGCGCCGCAACACCAGCGCCGGCGGCGGCGGGGGGCGGGCTGT
TCGGATCAGCGACGGTGGCGCCCGCCGCCGCGGGTGCCGTCACGTTCGGG
GCGACC
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