mRNA_L-elsbetiae_contig1296.2347.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1296.2347.1
Unique NamemRNA_L-elsbetiae_contig1296.2347.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1296.2347.1 vs. uniprot
Match: D8LLG7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG7_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 3.020e-33
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:    1 EKQKLKDAEEEKRLMEAYRERLDREQAERTAAHNKRLQRYEMIGTQWAETGAGKKQRDKDVAEERRVLAEAAIKEKADLDREI 249
            EKQK+ DAEE+KRLM+ YRERLDREQAERTAAHNKRLQRYEMIG QWAE+GAGK+Q DKD+AEERR+LAEAAIKEK D DREI
Sbjct:  177 EKQKIADAEEDKRLMKEYRERLDREQAERTAAHNKRLQRYEMIGNQWAESGAGKRQHDKDIAEERRILAEAAIKEKIDEDREI 259
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BLAST of mRNA_L-elsbetiae_contig1296.2347.1 vs. uniprot
Match: A0A7S3YA61_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA61_HETAK)

HSP 1 Score: 65.9 bits (159), Expect = 8.010e-11
Identity = 33/70 (47.14%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:   37 RLMEAYRERLDREQAERTAAHNKRLQRYEMIGTQWAETGAGKKQRDKDVAEERRVLAEAAIKEKADLDRE 246
            RLM+ Y E LD++  +R  A NKR++RY+ +G  W   GAG +QR++++  ER++L++AA KEKAD++RE
Sbjct:   99 RLMKEYAEMLDKQDRDRKEAFNKRIERYKFLGEMWESKGAGAQQREEELKLERKILSDAAAKEKADMERE 168
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BLAST of mRNA_L-elsbetiae_contig1296.2347.1 vs. uniprot
Match: A0A835ZGD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGD1_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.050e-5
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:   22 AEEEKRLMEAYRERLDREQAERTAAHNKRLQRYEMIGTQWAETGAGKKQRDKDVAEERRVLAEAAIKEKADLDREI 249
            AE++ RLM+ Y+ERLD+E+A+R        ++   IG  W E GAGKK+ ++    E  ++AEA  KE+AD+ RE+
Sbjct:  223 AEQDMRLMQEYKERLDKEEADRA-------EKLRRIGAFWTEKGAGKKEAEEQRRAEALIVAEANAKERADIAREL 291
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1296.2347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLG7_ECTSI3.020e-3384.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3YA61_HETAK8.010e-1147.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZGD1_9STRA2.050e-542.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1296contigL-elsbetiae_contig1296:14539..15410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_004540.1
Exons2
Model size250
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815477.5131178-CDS-L-elsbetiae_contig1296:14538..146091622815477.5131178-CDS-L-elsbetiae_contig1296:14538..14609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1296 14539..14609 +
1691682917.1306548-CDS-L-elsbetiae_contig1296:14538..146091691682917.1306548-CDS-L-elsbetiae_contig1296:14538..14609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1296 14539..14609 +
1622815477.5283146-CDS-L-elsbetiae_contig1296:15232..154101622815477.5283146-CDS-L-elsbetiae_contig1296:15232..15410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1296 15233..15410 +
1691682917.14159-CDS-L-elsbetiae_contig1296:15232..154101691682917.14159-CDS-L-elsbetiae_contig1296:15232..15410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1296 15233..15410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1296.2347.1prot_L-elsbetiae_contig1296.2347.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1296 14539..15410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1296.2347.1

>prot_L-elsbetiae_contig1296.2347.1 ID=prot_L-elsbetiae_contig1296.2347.1|Name=mRNA_L-elsbetiae_contig1296.2347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
EKQKLKDAEEEKRLMEAYRERLDREQAERTAAHNKRLQRYEMIGTQWAET
GAGKKQRDKDVAEERRVLAEAAIKEKADLDREI
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mRNA from alignment at L-elsbetiae_contig1296:14539..15410+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1296.2347.1 ID=mRNA_L-elsbetiae_contig1296.2347.1|Name=mRNA_L-elsbetiae_contig1296.2347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=872bp|location=Sequence derived from alignment at L-elsbetiae_contig1296:14539..15410+ (Laminarionema elsbetiae ELsaHSoW15)
GAGAAGCAAAAGCTCAAAGATGCCGAAGAGGAGAAGCGCCTCATGGAAGC
GTACCGCGAGAGACTTGACAGGCAAGAGAGGAGGGGGGGGGTGTCTTCTC
ATGTTTAGCTTTGGAAATGGTCGCACTTCCTTCGCACGAACCACACGTAC
ACTGACCAAGCAACCCTTTCGAGGCGGAACCCTCACAGAACGGGATGGGT
GTACATTCGGTATGCATTCATTATCGCCGGCCACTCATCACGTTCGAGAC
GGAGCGCAGATATCCTCTCGGCGTGGGCCTTTTACCACACGCGATATCTA
CGCTCCTCCTGCCGAATTTCGCCCATGCGAGTGCAACAAAGGGTGCTAAG
CTTAAGGTTACAGAGGAACCGCCTGTCCACGTAGGACAGTTCAGCTAAAC
CTGAGACCTACTTGTTTTGTCGCGACCAGACGTGGTACCTGCTCTACGGG
TTTATCCTCCCCTTCTCTCTCTGTCTCCGTTTCTCTCTTGGCTCTTGGCA
TAAATAGTGATCATCTTCGTTGTCTTTCCTTGGCACGGAGAAGGGGCAGA
AGAAGCATCGGCACTGAGCTCTTGCTTGATTTTTGCATCGAAGGTGTATC
AATTGAATGTTCACCTCTCCCCTCCCCTCGAGCCATGCATCCGGATGCTG
TTCTCACCTACGGTCTTGCTATTACCTGCTGCTTGTTTTGGCAGGGAGCA
GGCTGAACGGACCGCGGCCCACAATAAGCGTCTGCAGCGCTATGAAATGA
TCGGCACCCAGTGGGCAGAGACCGGCGCGGGTAAGAAGCAGCGCGACAAG
GACGTCGCCGAGGAGAGGAGAGTCCTGGCCGAGGCCGCCATCAAAGAGAA
GGCAGACCTAGACAGAGAGATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1296:14539..15410+

>mRNA_L-elsbetiae_contig1296.2347.1 ID=mRNA_L-elsbetiae_contig1296.2347.1|Name=mRNA_L-elsbetiae_contig1296.2347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig1296:14539..15410+ (Laminarionema elsbetiae ELsaHSoW15)
GAGAAGCAAAAGCTCAAAGATGCCGAAGAGGAGAAGCGCCTCATGGAAGC
GTACCGCGAGAGACTTGACAGGAGAAGCAAAAGCTCAAAGATGCCGAAGA
GGAGAAGCGCCTCATGGAAGCGTACCGCGAGAGACTTGACAGGGAGCAGG
CTGAACGGACCGCGGCCCACAATAAGCGTCTGCAGCGCTATGAAATGATC
GGCACCCAGTGGGCAGAGACCGGCGCGGGTAAGAAGCAGCGCGACAAGGA
CGTCGCCGAGGAGAGGAGAGTCCTGGCCGAGGCCGCCATCAAAGAGAAGG
CAGACCTAGACAGAGAGATCGGAGCAGGCTGAACGGACCGCGGCCCACAA
TAAGCGTCTGCAGCGCTATGAAATGATCGGCACCCAGTGGGCAGAGACCG
GCGCGGGTAAGAAGCAGCGCGACAAGGACGTCGCCGAGGAGAGGAGAGTC
CTGGCCGAGGCCGCCATCAAAGAGAAGGCAGACCTAGACAGAGAGATC
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