mRNA_L-elsbetiae_contig1296.2346.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1296.2346.1
Unique NamemRNA_L-elsbetiae_contig1296.2346.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1296.2346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1296contigL-elsbetiae_contig1296:10964..11595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size633
Cds size630
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815477.4628043-CDS-L-elsbetiae_contig1296:10963..115931622815477.4628043-CDS-L-elsbetiae_contig1296:10963..11593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1296 10964..11593 +
1691682917.115534-CDS-L-elsbetiae_contig1296:10963..115931691682917.115534-CDS-L-elsbetiae_contig1296:10963..11593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1296 10964..11593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1296.2346.1prot_L-elsbetiae_contig1296.2346.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1296 10964..11593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1296.2346.1

>prot_L-elsbetiae_contig1296.2346.1 ID=prot_L-elsbetiae_contig1296.2346.1|Name=mRNA_L-elsbetiae_contig1296.2346.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=210bp
SVCSWQCFYSPRFFESRPCVFIFHTRPISETGHGASLHPVNQLIQAEVDL
FMHSHSKVQAGDLSRLERAVRGATKAGDVWQHDQQVHTPRSVATSRSATP
RSTGASTYRSATSSRGSGIIPACRTATDRTPRGLERAQQQRATNGNGLET
TRSRSRPRPSTAGSVTSGSRQHQQQHTRQPSGRRSVSSSRGSRNKGSGNI
RIPGNVKDEW
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mRNA from alignment at L-elsbetiae_contig1296:10964..11595+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1296.2346.1 ID=mRNA_L-elsbetiae_contig1296.2346.1|Name=mRNA_L-elsbetiae_contig1296.2346.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=632bp|location=Sequence derived from alignment at L-elsbetiae_contig1296:10964..11595+ (Laminarionema elsbetiae ELsaHSoW15)
AGTGTCTGTAGCTGGCAGTGCTTCTATTCACCTCGCTTCTTTGAATCTCG
GCCGTGTGTGTTTATTTTTCACACGCGACCGATCAGTGAGACCGGCCATG
GAGCCTCCTTACACCCGGTCAACCAACTTATTCAAGCGGAGGTTGATCTT
TTCATGCACAGTCACAGCAAGGTGCAAGCCGGTGATCTCTCCCGGCTCGA
GCGTGCCGTGAGGGGTGCCACGAAGGCGGGGGACGTGTGGCAACACGACC
AACAAGTACACACCCCTAGGTCAGTTGCGACGTCTCGTTCGGCCACTCCA
AGATCAACTGGGGCGTCCACCTATCGGAGTGCTACATCGTCACGCGGAAG
CGGTATCATACCTGCGTGCCGCACTGCTACAGATAGAACGCCGCGCGGGT
TGGAGCGCGCGCAGCAGCAGAGAGCGACAAATGGGAACGGGCTAGAAACA
ACGCGCAGCCGAAGTCGACCACGCCCAAGCACTGCTGGGAGTGTGACTTC
TGGCAGTCGTCAGCACCAGCAACAACACACACGGCAACCGAGTGGGCGCA
GAAGTGTGTCATCATCCAGAGGTAGTAGGAACAAGGGCAGCGGAAATATC
CGCATCCCGGGAAATGTCAAGGACGAATGGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1296:10964..11595+

>mRNA_L-elsbetiae_contig1296.2346.1 ID=mRNA_L-elsbetiae_contig1296.2346.1|Name=mRNA_L-elsbetiae_contig1296.2346.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1260bp|location=Sequence derived from alignment at L-elsbetiae_contig1296:10964..11595+ (Laminarionema elsbetiae ELsaHSoW15)
AGTGTCTGTAGCTGGCAGTGCTTCTATTCACCTCGCTTCTTTGAATCTCG
GCCGTGTGTGTTTATTTTTCACACGCGACCGATCAGTGAGACCGGCCATG
GAGCCTCCTTACACCCGGTCAACCAACTTATTCAAGCGGAGGTTGATCTT
TTCATGCACAGTCACAGCAAGGTGCAAGCCGGTGATCTCTCCCGGCTCGA
GCGTGCCGTGAGGGGTGCCACGAAGGCGGGGGACGTGTGGCAACACGACC
AACAAGTACACACCCCTAGGTCAGTTGCGACGTCTCGTTCGGCCACTCCA
AGATCAACTGGGGCGTCCACCTATCGGAGTGCTACATCGTCACGCGGAAG
CGGTATCATACCTGCGTGCCGCACTGCTACAGATAGAACGCCGCGCGGGT
TGGAGCGCGCGCAGCAGCAGAGAGCGACAAATGGGAACGGGCTAGAAACA
ACGCGCAGCCGAAGTCGACCACGCCCAAGCACTGCTGGGAGTGTGACTTC
TGGCAGTCGTCAGCACCAGCAACAACACACACGGCAACCGAGTGGGCGCA
GAAGTGTGTCATCATCCAGAGGTAGTAGGAACAAGGGCAGCGGAAATATC
CGCATCCCGGGAAATGTCAAGGACGAATGGAGTGTCTGTAGCTGGCAGTG
CTTCTATTCACCTCGCTTCTTTGAATCTCGGCCGTGTGTGTTTATTTTTC
ACACGCGACCGATCAGTGAGACCGGCCATGGAGCCTCCTTACACCCGGTC
AACCAACTTATTCAAGCGGAGGTTGATCTTTTCATGCACAGTCACAGCAA
GGTGCAAGCCGGTGATCTCTCCCGGCTCGAGCGTGCCGTGAGGGGTGCCA
CGAAGGCGGGGGACGTGTGGCAACACGACCAACAAGTACACACCCCTAGG
TCAGTTGCGACGTCTCGTTCGGCCACTCCAAGATCAACTGGGGCGTCCAC
CTATCGGAGTGCTACATCGTCACGCGGAAGCGGTATCATACCTGCGTGCC
GCACTGCTACAGATAGAACGCCGCGCGGGTTGGAGCGCGCGCAGCAGCAG
AGAGCGACAAATGGGAACGGGCTAGAAACAACGCGCAGCCGAAGTCGACC
ACGCCCAAGCACTGCTGGGAGTGTGACTTCTGGCAGTCGTCAGCACCAGC
AACAACACACACGGCAACCGAGTGGGCGCAGAAGTGTGTCATCATCCAGA
GGTAGTAGGAACAAGGGCAGCGGAAATATCCGCATCCCGGGAAATGTCAA
GGACGAATGG
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