mRNA_L-elsbetiae_contig12957.2341.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12957.2341.1
Unique NamemRNA_L-elsbetiae_contig12957.2341.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12957.2341.1 vs. uniprot
Match: A0A6N2ELT8_9BACT (Probable transcriptional regulatory protein EA423_04580 n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A6N2ELT8_9BACT)

HSP 1 Score: 355 bits (910), Expect = 1.780e-121
Identity = 176/247 (71.26%), Postives = 208/247 (84.21%), Query Frame = 1
Query:    1 MAGHSKWSNIKHRKERQDKKRGAAWSKCSRAIIAAARNGGGDPDANLTLRYAIDEAKYANMPKDTIQRAIEKGAGAADGDNYEEAIYEGYGPGGAAMIVTALTDNKTRTVADVRSLFKKGGGTLGQPGSVAFSFQTKGQFAIEAGNTTEDQLMDVALDAGAEEIEAPEGDDGVWAVQCEPADFGAVRDAIEAAGIEIASAEITKVATNTIEVSGDDVRKLMNLIEALEDSDDVQKVYSNADISDEEL 741
            MAGHSKWSNI+HRKERQDKK+G  WSKCSRAIIAAAR+GG DPD NL LRYAIDEAKYANMPKDTIQRAI+KGAGAA GDN+E   YEGYGPGG A+I  ALTDN+TRTV D+R  F + GG LGQ GSVAF FQT+GQ  I A    E+QLM++AL+AGA+++EAPEG+DG WAV C+P+ F  V++AIEAAG+EI  AEITK+  NT+ V+GDD RKLMNLI+A+ED+DDVQKVY+NADI +E+L
Sbjct:    1 MAGHSKWSNIRHRKERQDKKKGKIWSKCSRAIIAAARSGGPDPDVNLALRYAIDEAKYANMPKDTIQRAIDKGAGAAGGDNFESITYEGYGPGGVAIIADALTDNRTRTVNDLRLAFSRQGGNLGQSGSVAFLFQTRGQILIPAAKANEEQLMELALEAGADDVEAPEGEDGYWAVLCDPSSFIQVKEAIEAAGVEIEQAEITKIPDNTVAVTGDDARKLMNLIDAIEDNDDVQKVYTNADIDEEDL 247          
BLAST of mRNA_L-elsbetiae_contig12957.2341.1 vs. uniprot
Match: A0A3M2B8P5_9BACT (Probable transcriptional regulatory protein D6695_08790 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2B8P5_9BACT)

HSP 1 Score: 341 bits (875), Expect = 4.040e-116
Identity = 172/251 (68.53%), Postives = 206/251 (82.07%), Query Frame = 1
Query:    1 MAGHSKWSNIKHRKERQDKKRGAAWSKCSRAIIAAARNGGGDPDANLTLRYAIDEAKYANMPKDTIQRAIEKGAGAADGDNYEEAIYEGYGPGGAAMIVTALTDNKTRTVADVRSLFKKGGGTLGQPGSVAFSFQTKGQFAIEAGNTTEDQLMDVALDAGAEEIEAPEGDDGVWAVQCEPADFGAVRDAIEAAGIEIASAEITKVATNTIEVSGDDVRKLMNLIEALEDSDDVQKVYSNADISDEELAALE 753
            MAGHSKW+NI+HRKERQDKK+G  WSKCS+AI+AAAR GG DPD NL LRYAIDEAKYANMPKDTIQRAI+KGAGA+ G+N+EE +YEG+GPGG A+I+ ALTDNK RTV DVR  FKK GG LG  G+V+F FQTKGQ  + AG   E+ +M++AL+AGAE+++ PEGDDG W +  EP+DF  V++A EAAGIEIA A ITK+  +  EV G+D RKL+NLI+ALEDSDDVQKVYSNA I D+ELA LE
Sbjct:    1 MAGHSKWANIRHRKERQDKKKGKIWSKCSKAIMAAARAGGPDPDTNLALRYAIDEAKYANMPKDTIQRAIDKGAGASGGENFEEIVYEGFGPGGVALIIEALTDNKNRTVTDVRQAFKKNGGNLGNTGAVSFMFQTKGQIVL-AGKHDENTVMEMALEAGAEDVQPPEGDDGAWVILTEPSDFQQVKEAFEAAGIEIAEAGITKLPNDQQEVRGEDARKLLNLIDALEDSDDVQKVYSNASIPDDELANLE 250          
BLAST of mRNA_L-elsbetiae_contig12957.2341.1 vs. uniprot
Match: A0A3D4UG15_9BACT (Probable transcriptional regulatory protein DF699_01225 n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UG15_9BACT)

HSP 1 Score: 341 bits (875), Expect = 4.640e-116
Identity = 166/253 (65.61%), Postives = 209/253 (82.61%), Query Frame = 1
Query:    1 MAGHSKWSNIKHRKERQDKKRGAAWSKCSRAIIAAARNGGGDPDANLTLRYAIDEAKYANMPKDTIQRAIEKGAGAADGDNYEEAIYEGYGPGGAAMIVTALTDNKTRTVADVRSLFKKGGGTLGQPGSVAFSFQTKGQFAIEAGNTTEDQLMDVALDAGAEEIEAPEGDD---GVWAVQCEPADFGAVRDAIEAAGIEIASAEITKVATNTIEVSGDDVRKLMNLIEALEDSDDVQKVYSNADISDEELAAL 750
            MAGHSKW+NI+HRKERQDKK+G  WSKCS+AI+ AAR GGGDP+ NL LRYAIDEAKYANMPKDTI+RAIEKG+G A G  +++ +YEGYGPGG A+I+ ALTDN TRTV +VRS+FKKGGG++G  G+VAF F TKGQ  I+A    EDQ+MD AL+AGA++++APEGD+   G W +  +P +F  V+DAIEA+GIEI  AEIT++  NT++V+GDDVRK+MNLI+ALED+DD+QKVYSNA+   +ELA L
Sbjct:    1 MAGHSKWANIRHRKERQDKKKGKVWSKCSKAIMVAARAGGGDPETNLALRYAIDEAKYANMPKDTIKRAIEKGSGEAGGAEFQQIVYEGYGPGGTALIIDALTDNNTRTVGEVRSIFKKGGGSMGNAGTVAFMFTTKGQIFIDANKYDEDQVMDAALEAGADDVQAPEGDEQDKGAWTIVTDPTEFQGVKDAIEASGIEIVEAEITRLPENTVDVAGDDVRKVMNLIDALEDNDDIQKVYSNAEFDGDELAKL 253          
BLAST of mRNA_L-elsbetiae_contig12957.2341.1 vs. uniprot
Match: A0A7D8YJ54_9BACT (Probable transcriptional regulatory protein EA378_01620 n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7D8YJ54_9BACT)

HSP 1 Score: 322 bits (824), Expect = 2.740e-108
Identity = 165/254 (64.96%), Postives = 199/254 (78.35%), Query Frame = 1
Query:    1 MAGHSKWSNIKHRKERQDKKRGAAWSKCSRAIIAAARNGGGDPDANLTLRYAIDEAKYANMPKDTIQRAIEKGAGAADGDNYEEAIYEGYGPGGAAMIVTALTDNKTRTVADVRSLFKKGGGTLGQPGSVAFSFQTKGQFAIEAGNTTEDQLMDVALDAGAEEIEAPEG--DD--GVWAVQCEPADFGAVRDAIEAAGIEIASAEITKVATNTIEVSGDDVRKLMNLIEALEDSDDVQKVYSNADISDEELAAL 750
            MAGHSKW+NIKHRK  QDKKRG AWSKCS+AI+AAAR GG DPD NL+LRYAIDEAKYANMPKDTIQRAI+KGAG   G+++ E  YEGYGP G A+I   +TDN TRTV+++R++FKK GG+LGQ GSVAF F+T+G+  I A   +ED LM++ALDAGA ++EAPEG  DD  G W V CEPA F  V+DAIE A + I  A I K+ TNT+E+  +D +KLMNL++ALED+DDVQ VY NADISDE  A L
Sbjct:    1 MAGHSKWANIKHRKAAQDKKRGKAWSKCSKAIMAAARQGGPDPDTNLSLRYAIDEAKYANMPKDTIQRAIDKGAGNTGGEDFTEVTYEGYGPSGVAIIADGITDNLTRTVSEIRAIFKKAGGSLGQSGSVAFQFETRGRILIPALGVSEDALMELALDAGASDVEAPEGATDDEPGFWTVYCEPASFLQVKDAIERAELAIEEAGIAKIPTNTVEIGAEDAQKLMNLLDALEDNDDVQHVYHNADISDEVAATL 254          
BLAST of mRNA_L-elsbetiae_contig12957.2341.1 vs. uniprot
Match: A0A5M4D3M5_9CYAN (Probable transcriptional regulatory protein EDM82_10495 n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D3M5_9CYAN)

HSP 1 Score: 318 bits (814), Expect = 7.130e-107
Identity = 161/245 (65.71%), Postives = 197/245 (80.41%), Query Frame = 1
Query:    1 MAGHSKWSNIKHRKERQDKKRGAAWSKCSRAIIAAARNGGGDPDANLTLRYAIDEAKYANMPKDTIQRAIEKGAGAADGDNYEEAIYEGYGPGGAAMIVTALTDNKTRTVADVRSLFKKGGGTLGQPGSVAFSFQTKGQFAIEAGNTTEDQLMDVALDAGAEEIEAPEGDDGVWAVQCEPADFGAVRDAIEAAGIEIASAEITKVATNTIEVSGDDVRKLMNLIEALEDSDDVQKVYSNADISDE 735
            MAGHSKW+NIKHRK +QD+KRG  W+KCS+AII AAR GGGDPD NL+LRYAIDEAKYANMPKDTIQRAI+KGAGA  G+N+E   YEG+GPGGAA+I+  LTDNKTRTV DVR+ FKK GG LG  GSV+F F+TKGQ  + AG+  E+ +M+ ALDAGAE+++AP+G+DG W +  E + F  V++A E+ GIEIA A ITK+  +   V  +D RKL+ LI+ALEDSDD+QKVYSNADISDE
Sbjct:    1 MAGHSKWANIKHRKAKQDQKRGKVWTKCSKAIIVAARAGGGDPDTNLSLRYAIDEAKYANMPKDTIQRAIDKGAGAGGGENFEAVSYEGFGPGGAALIIDGLTDNKTRTVTDVRNAFKKYGGNLGTTGSVSFMFKTKGQIIL-AGSHDENTIMEKALDAGAEDVQAPQGEDGAWVIITEVSSFQQVKEAFESGGIEIAEAAITKIPNDQQLVGEEDARKLLALIDALEDSDDIQKVYSNADISDE 244          
BLAST of mRNA_L-elsbetiae_contig12957.2341.1 vs. uniprot
Match: A0A3M8FVP9_9BACT (Probable transcriptional regulatory protein ED559_09120 n=1 Tax=Phycisphaera sp. TaxID=2030824 RepID=A0A3M8FVP9_9BACT)

HSP 1 Score: 318 bits (814), Expect = 8.190e-107
Identity = 156/251 (62.15%), Postives = 198/251 (78.88%), Query Frame = 1
Query:    1 MAGHSKWSNIKHRKERQDKKRGAAWSKCSRAIIAAARNGGGDPDANLTLRYAIDEAKYANMPKDTIQRAIEKGAGAADGDNYEEAIYEGYGPGGAAMIVTALTDNKTRTVADVRSLFKKGGGTLGQPGSVAFSFQTKGQFAIEAGNTTEDQLMDVALDAGAEEIEAPEGDD---GVWAVQCEPADFGAVRDAIEAAGIEIASAEITKVATNTIEVSGDDVRKLMNLIEALEDSDDVQKVYSNADISDEELA 744
            MAGHSKW+NI+HRKERQD KR   WSKCS+A++AAAR GG DPD NLTLRYAIDEAKYANMPKDTI+RAI+KGAG+  GD+YE   YEGYGPGG A+I+  LTDNK RTV ++R+LFKKGGG+LG  G+VA+ FQTKGQ  ++A   +E+Q+MD+A++AGAE+++APE DD   G W +  E   F  V+ AIE AGIEI  A+I K+  +T+ V+G+D +K++NLIE +ED+DDVQ VY+NADI    LA
Sbjct:    1 MAGHSKWANIRHRKERQDSKRSKIWSKCSKALMAAARAGGPDPDTNLTLRYAIDEAKYANMPKDTIKRAIDKGAGSGQGDSYESITYEGYGPGGTAIIIDTLTDNKNRTVTEIRTLFKKGGGSLGNAGTVAYMFQTKGQILVDAAKVSEEQIMDLAIEAGAEDVQAPEADDDDAGFWTIITEATGFQQVKVAIEEAGIEITEAQIAKIPDDTVAVAGEDAKKVVNLIEGIEDNDDVQSVYTNADIDAASLA 251          
BLAST of mRNA_L-elsbetiae_contig12957.2341.1 vs. uniprot
Match: A0A2A4RKY3_9BACT (Probable transcriptional regulatory protein COB72_06430 n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RKY3_9BACT)

HSP 1 Score: 317 bits (812), Expect = 1.830e-106
Identity = 157/255 (61.57%), Postives = 201/255 (78.82%), Query Frame = 1
Query:    1 MAGHSKWSNIKHRKERQDKKRGAAWSKCSRAIIAAARNGGGDPDANLTLRYAIDEAKYANMPKDTIQRAIEKGAGAADGDNYEEAIYEGYGPGGAAMIVTALTDNKTRTVADVRSLFKKGGGTLGQPGSVAFSFQTKGQFAIEAGNTTEDQLMDVALDAGAEEIEAPEGDD----GVWAVQCEPADFGAVRDAIEAAGIEIASAEITKVATNTIEVSGDDVRKLMNLIEALEDSDDVQKVYSNADISDEELAALE 753
            MAGHSKWSNIKHRK  QD K+G  WSKCS+AI+ AA+ GGGDP+ NL+LRYAIDE+KYANMPKDTI+RAI KG+G   G +Y++ ++EGYGPGG A++V  LTDN TRTV DVR++FKK GG++G  G+VAF FQTKGQ  I+A    ED +MD AL+AGA++++APEG D    GVW +  +  +F  V++A+EA G+EI  AEI ++  NT+ V+GDDVRK+MNLI+ LED+DDVQKVYSNAD + E+LA LE
Sbjct:    1 MAGHSKWSNIKHRKAAQDNKKGKIWSKCSKAIMVAAKMGGGDPETNLSLRYAIDESKYANMPKDTIKRAIAKGSGDTSGADYQDVVFEGYGPGGTAILVLTLTDNNTRTVGDVRNIFKKRGGSMGNAGAVAFMFQTKGQIIIDASKYDEDTIMDKALEAGADDVQAPEGADEENPGVWTILTDATEFITVKEALEADGVEILEAEIARIPENTVPVAGDDVRKVMNLIDTLEDNDDVQKVYSNADFNIEDLANLE 255          
BLAST of mRNA_L-elsbetiae_contig12957.2341.1 vs. uniprot
Match: A0A6M8W831_9BACT (Probable transcriptional regulatory protein HND58_11290 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A6M8W831_9BACT)

HSP 1 Score: 315 bits (806), Expect = 1.440e-105
Identity = 162/255 (63.53%), Postives = 195/255 (76.47%), Query Frame = 1
Query:    1 MAGHSKWSNIKHRKERQDKKRGAAWSKCSRAIIAAARNGGGDPDANLTLRYAIDEAKYANMPKDTIQRAIEKGAGAADGDNYEEAIYEGYGPGGAAMIVTALTDNKTRTVADVRSLFKKGGGTLGQPGSVAFSFQTKGQFAIEAGNTTEDQLMDVALDAGAEEIEAPEG----DDGVWAVQCEPADFGAVRDAIEAAGIEIASAEITKVATNTIEVSGDDVRKLMNLIEALEDSDDVQKVYSNADISDEELAALE 753
            MAGHSKW+NI+HRK+RQDKK+G  WSKCSRAIIAAAR GGGDP  NL LRYAIDEAKYANMPKDTI RAI+KGAG+A GD +E   YEGYGP G A+I  ALTDN+ RT  +VRS F K GG LG  G V + F+TKGQ  + +G+  E+Q+M++AL+ GA +++ PE     D G W V+  PADF  V++AIE AG+EI  AEITK+  NTI +  +D RKLMNLI+ALEDSDDVQKVY+NADI DE LA L+
Sbjct:    1 MAGHSKWANIRHRKDRQDKKKGKIWSKCSRAIIAAARAGGGDPATNLALRYAIDEAKYANMPKDTITRAIDKGAGSAGGDAFESVSYEGYGPNGVAVIADALTDNRNRTAPEVRSTFTKHGGNLGATGCVGYMFETKGQIRV-SGSVDEEQVMEIALEGGANDVQPPEPIDDEDPGFWTVETSPADFATVKEAIEQAGLEIIDAEITKIPDNTITLDSNDARKLMNLIDALEDSDDVQKVYTNADIPDEVLATLD 254          
BLAST of mRNA_L-elsbetiae_contig12957.2341.1 vs. uniprot
Match: A0A168TH28_9CYAN (Probable transcriptional regulatory protein AY599_21450 n=1 Tax=Leptolyngbya valderiana BDU 20041 TaxID=322866 RepID=A0A168TH28_9CYAN)

HSP 1 Score: 313 bits (803), Expect = 3.980e-105
Identity = 160/252 (63.49%), Postives = 197/252 (78.17%), Query Frame = 1
Query:    1 MAGHSKWSNIKHRKERQDKKRGAAWSKCSRAIIAAARNGGGDPDANLTLRYAIDEAKYANMPKDTIQRAIEKGAGAADGDNYEEAIYEGYGPGGAAMIVTALTDNKTRTVADVRSLFKKGGGTLGQPGSVAFSFQTKGQFAIEAGNTTEDQLMDVALDAGAEEIEAPEGD---DGVWAVQCEPADFGAVRDAIEAAGIEIASAEITKVATNTIEVSGDDVRKLMNLIEALEDSDDVQKVYSNADISDEELAA 747
            MAGHSKW+NI+HRKERQDKK+G  WSKCS+AI+AAAR GGGDPD NL LRYAIDEA+YANMPKDTIQRA+EKG+GAADG+ + E  YEGYGPGG A+IV  LTDN+TRTV D+R +F K GG++G  GSVAF F+TKG+  IEA  TTE+QLMDVAL+AGAE+IEAPE D   +G W +  E  D+ AVR A+E A IE++   I K+       + ++ +KLMNL++ALED++DVQKVY N D   EE+AA
Sbjct:    1 MAGHSKWANIRHRKERQDKKKGKIWSKCSKAIMAAARAGGGDPDTNLALRYAIDEARYANMPKDTIQRAVEKGSGAADGEGFAEITYEGYGPGGVAIIVDTLTDNRTRTVNDLRFIFNKAGGSMGNAGSVAFMFETKGRIYIEASKTTEEQLMDVALEAGAEDIEAPEADGDEEGYWVITTERTDYHAVRQALEQASIEVSEGGIDKIPNVIARPTPEEAKKLMNLVDALEDNEDVQKVYHNLD---EEMAA 249          
BLAST of mRNA_L-elsbetiae_contig12957.2341.1 vs. uniprot
Match: A0A3M2CPN2_9BACT (Probable transcriptional regulatory protein D6692_06245 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CPN2_9BACT)

HSP 1 Score: 312 bits (799), Expect = 1.730e-104
Identity = 159/254 (62.60%), Postives = 199/254 (78.35%), Query Frame = 1
Query:    1 MAGHSKWSNIKHRKERQDKKRGAAWSKCSRAIIAAARNGGGDPDANLTLRYAIDEAKYANMPKDTIQRAIEKGAGAADGDNYEEAIYEGYGPGGAAMIVTALTDNKTRTVADVRSLFKKGGGTLGQPGSVAFSFQTKGQFAIEAGNTTEDQLMDVALDAGAEEIEAPEG--DD--GVWAVQCEPADFGAVRDAIEAAGIEIASAEITKVATNTIEVSGDDVRKLMNLIEALEDSDDVQKVYSNADISDEELAAL 750
            MAGHSKW+NIKHRK  QDKKRG  W+KCS+AI+AAAR+GG D D NL LRYA+DEAKYANMPKDTIQRAI+KGAG   G++++  ++EGYGPG  A+IV  LTDN TRTV ++RS+F K GG +G  GSVAF FQTKGQ  ++AG  +E+Q+M+ AL+AGAE++ APEG  DD  GVW V  +P +F  V+DA+E AG+EI  AEI ++   T+ V G+D RKL+ LIEALED+DDVQKV+SNADI  EE+A L
Sbjct:    1 MAGHSKWANIKHRKAAQDKKRGKIWTKCSKAIMAAARSGGPDLDTNLALRYAVDEAKYANMPKDTIQRAIDKGAGNTSGEDFKPVVFEGYGPGSTAIIVEGLTDNNTRTVNEIRSIFNKLGGNMGNSGSVAFMFQTKGQIILDAGKHSEEQVMEAALEAGAEDVRAPEGATDDEPGVWTVLTDPTEFQQVKDALEKAGLEIMEAEIARIPETTVLVKGEDARKLLALIEALEDNDDVQKVFSNADIPAEEMANL 254          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12957.2341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N2ELT8_9BACT1.780e-12171.26Probable transcriptional regulatory protein EA423_... [more]
A0A3M2B8P5_9BACT4.040e-11668.53Probable transcriptional regulatory protein D6695_... [more]
A0A3D4UG15_9BACT4.640e-11665.61Probable transcriptional regulatory protein DF699_... [more]
A0A7D8YJ54_9BACT2.740e-10864.96Probable transcriptional regulatory protein EA378_... [more]
A0A5M4D3M5_9CYAN7.130e-10765.71Probable transcriptional regulatory protein EDM82_... [more]
A0A3M8FVP9_9BACT8.190e-10762.15Probable transcriptional regulatory protein ED559_... [more]
A0A2A4RKY3_9BACT1.830e-10661.57Probable transcriptional regulatory protein COB72_... [more]
A0A6M8W831_9BACT1.440e-10563.53Probable transcriptional regulatory protein HND58_... [more]
A0A168TH28_9CYAN3.980e-10563.49Probable transcriptional regulatory protein AY599_... [more]
A0A3M2CPN2_9BACT1.730e-10462.60Probable transcriptional regulatory protein D6692_... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12957contigL-elsbetiae_contig12957:3037..3792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score269.6
Seed ortholog evalue1.4e-69
Seed eggNOG ortholog1142394.PSMK_00910
Preferred nameyebC
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0044424,GO:0044444,GO:0044464,GO:0050896
EggNOG free text desc.transcriptional regulatory protein
EggNOG OGs2IWWB@203682,COG0217@1,COG0217@2
Ec32 ortholog descriptionIntegrase, N-terminal zinc-binding domain-like
Ec32 orthologEc-28_002960.1
COG Functional cat.K
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size756
Cds size756
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815477.112091-CDS-L-elsbetiae_contig12957:3036..37921622815477.112091-CDS-L-elsbetiae_contig12957:3036..3792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12957 3037..3792 +
1691682916.9291058-CDS-L-elsbetiae_contig12957:3036..37921691682916.9291058-CDS-L-elsbetiae_contig12957:3036..3792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12957 3037..3792 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12957.2341.1prot_L-elsbetiae_contig12957.2341.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12957 3037..3792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12957.2341.1

>prot_L-elsbetiae_contig12957.2341.1 ID=prot_L-elsbetiae_contig12957.2341.1|Name=mRNA_L-elsbetiae_contig12957.2341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=252bp
MAGHSKWSNIKHRKERQDKKRGAAWSKCSRAIIAAARNGGGDPDANLTLR
YAIDEAKYANMPKDTIQRAIEKGAGAADGDNYEEAIYEGYGPGGAAMIVT
ALTDNKTRTVADVRSLFKKGGGTLGQPGSVAFSFQTKGQFAIEAGNTTED
QLMDVALDAGAEEIEAPEGDDGVWAVQCEPADFGAVRDAIEAAGIEIASA
EITKVATNTIEVSGDDVRKLMNLIEALEDSDDVQKVYSNADISDEELAAL
E*
back to top

mRNA from alignment at L-elsbetiae_contig12957:3037..3792+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12957.2341.1 ID=mRNA_L-elsbetiae_contig12957.2341.1|Name=mRNA_L-elsbetiae_contig12957.2341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig12957:3037..3792+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGGCCACAGCAAATGGTCCAACATCAAGCACCGCAAGGAACGCCA GGACAAGAAGCGTGGCGCGGCGTGGTCAAAGTGCTCGCGCGCGATCATCG CGGCAGCTCGCAACGGCGGGGGCGACCCCGATGCCAACCTCACGCTCCGG TACGCCATCGATGAAGCCAAGTACGCCAACATGCCCAAGGACACGATCCA GCGGGCCATCGAGAAGGGCGCTGGTGCTGCCGACGGTGATAACTACGAAG AAGCGATCTACGAAGGCTACGGCCCGGGCGGGGCCGCCATGATCGTCACC GCGCTCACCGACAACAAGACCCGCACCGTTGCCGACGTGCGCAGCCTCTT CAAGAAGGGCGGCGGGACGCTCGGCCAGCCGGGCTCGGTTGCCTTCAGCT TCCAGACCAAGGGGCAGTTCGCTATCGAGGCGGGCAATACCACCGAAGAC CAGCTTATGGACGTCGCGCTTGATGCAGGCGCTGAAGAGATCGAAGCGCC CGAGGGCGACGACGGCGTGTGGGCTGTGCAGTGCGAGCCCGCCGACTTCG GAGCCGTGCGCGACGCGATCGAGGCCGCGGGCATCGAGATCGCCAGCGCC GAGATCACCAAGGTCGCGACCAACACCATCGAGGTCTCCGGCGACGACGT GCGAAAGCTGATGAACCTGATTGAAGCGCTCGAAGACTCCGACGATGTGC AGAAAGTCTACTCCAACGCCGACATCTCCGACGAGGAACTCGCTGCGCTG GAGTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12957:3037..3792+

>mRNA_L-elsbetiae_contig12957.2341.1 ID=mRNA_L-elsbetiae_contig12957.2341.1|Name=mRNA_L-elsbetiae_contig12957.2341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1512bp|location=Sequence derived from alignment at L-elsbetiae_contig12957:3037..3792+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGGCCACAGCAAATGGTCCAACATCAAGCACCGCAAGGAACGCCA
GGACAAGAAGCGTGGCGCGGCGTGGTCAAAGTGCTCGCGCGCGATCATCG
CGGCAGCTCGCAACGGCGGGGGCGACCCCGATGCCAACCTCACGCTCCGG
TACGCCATCGATGAAGCCAAGTACGCCAACATGCCCAAGGACACGATCCA
GCGGGCCATCGAGAAGGGCGCTGGTGCTGCCGACGGTGATAACTACGAAG
AAGCGATCTACGAAGGCTACGGCCCGGGCGGGGCCGCCATGATCGTCACC
GCGCTCACCGACAACAAGACCCGCACCGTTGCCGACGTGCGCAGCCTCTT
CAAGAAGGGCGGCGGGACGCTCGGCCAGCCGGGCTCGGTTGCCTTCAGCT
TCCAGACCAAGGGGCAGTTCGCTATCGAGGCGGGCAATACCACCGAAGAC
CAGCTTATGGACGTCGCGCTTGATGCAGGCGCTGAAGAGATCGAAGCGCC
CGAGGGCGACGACGGCGTGTGGGCTGTGCAGTGCGAGCCCGCCGACTTCG
GAGCCGTGCGCGACGCGATCGAGGCCGCGGGCATCGAGATCGCCAGCGCC
GAGATCACCAAGGTCGCGACCAACACCATCGAGGTCTCCGGCGACGACGT
GCGAAAGCTGATGAACCTGATTGAAGCGCTCGAAGACTCCGACGATGTGC
AGAAAGTCTACTCCAACGCCGACATCTCCGACGAGGAACTCGCTGCGCTG
GAGTAAATGGCCGGCCACAGCAAATGGTCCAACATCAAGCACCGCAAGGA
ACGCCAGGACAAGAAGCGTGGCGCGGCGTGGTCAAAGTGCTCGCGCGCGA
TCATCGCGGCAGCTCGCAACGGCGGGGGCGACCCCGATGCCAACCTCACG
CTCCGGTACGCCATCGATGAAGCCAAGTACGCCAACATGCCCAAGGACAC
GATCCAGCGGGCCATCGAGAAGGGCGCTGGTGCTGCCGACGGTGATAACT
ACGAAGAAGCGATCTACGAAGGCTACGGCCCGGGCGGGGCCGCCATGATC
GTCACCGCGCTCACCGACAACAAGACCCGCACCGTTGCCGACGTGCGCAG
CCTCTTCAAGAAGGGCGGCGGGACGCTCGGCCAGCCGGGCTCGGTTGCCT
TCAGCTTCCAGACCAAGGGGCAGTTCGCTATCGAGGCGGGCAATACCACC
GAAGACCAGCTTATGGACGTCGCGCTTGATGCAGGCGCTGAAGAGATCGA
AGCGCCCGAGGGCGACGACGGCGTGTGGGCTGTGCAGTGCGAGCCCGCCG
ACTTCGGAGCCGTGCGCGACGCGATCGAGGCCGCGGGCATCGAGATCGCC
AGCGCCGAGATCACCAAGGTCGCGACCAACACCATCGAGGTCTCCGGCGA
CGACGTGCGAAAGCTGATGAACCTGATTGAAGCGCTCGAAGACTCCGACG
ATGTGCAGAAAGTCTACTCCAACGCCGACATCTCCGACGAGGAACTCGCT
GCGCTGGAGTAA
back to top