mRNA_L-elsbetiae_contig12952.2339.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12952.2339.1 vs. uniprot
Match: D8LQ11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ11_ECTSI) HSP 1 Score: 268 bits (686), Expect = 1.450e-85 Identity = 129/146 (88.36%), Postives = 139/146 (95.21%), Query Frame = 2 Query: 2 GRQYRVSMACPQGTRGAVDLASFRCDPELSALLAAKGVWETLRARLAQAEDLEGFVAELTDVLEKVLRACPKQEPPPAEFYSRLVEEIDAVGWSHLASMDSLLTSVQLREKDAAGREHVFAVSLPSDYPHSPPICSVDLPTTLDLR 439 GRQYRVSMACPQG RG VDLASFRCDPELSALL A+GVW+TLRARLAQ ED+EGF+AELTDVLEKVLR+CPKQ+PPPAEFYSRLV EIDAVGWSHL SMDSLLTSVQLRE+DAAGREHVFA+SLPS+YPHSPPICSVDLPT L+LR Sbjct: 23 GRQYRVSMACPQGRRGIVDLASFRCDPELSALLEARGVWDTLRARLAQTEDVEGFMAELTDVLEKVLRSCPKQDPPPAEFYSRLVSEIDAVGWSHLVSMDSLLTSVQLRERDAAGREHVFAISLPSNYPHSPPICSVDLPTHLNLR 168
BLAST of mRNA_L-elsbetiae_contig12952.2339.1 vs. uniprot
Match: A0A835YLD4_9STRA (WD-repeat region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD4_9STRA) HSP 1 Score: 145 bits (365), Expect = 3.530e-38 Identity = 76/163 (46.63%), Postives = 97/163 (59.51%), Query Frame = 2 Query: 2 GRQYRVSMACPQGTRGAVDLASFRCDPELSALLAAKGVWETLRARLAQAEDLEGFVAELTDVLEKVLRACPKQEPPPAEFYSRLVEEIDAVGWSHLASMDSLLTSVQLREKDAAGREHVFAVSLPSDYPHSPPICSVDLPTTLDLR*GGGIYRAAGALPRSHA 490 GRQ+R+ + + G VD +F CD ELS +L + G LR RLAQ D FVAEL DVL+++LRA P+ P PA +YSRLV EID VGW HL ++ L+ +QLR DAAGR HV V++P DYP + P C DLP L+ G A L + A Sbjct: 35 GRQFRIKIRL-KSPGGQVDAEAFACDAELSQILTSAGALPALRLRLAQTPDPASFVAELQDVLQRLLRAAPQSAPAPAAYYSRLVAEIDKVGWEHLVTISERLSHLQLRVSDAAGRHHVIGVTMPPDYPRTAPTCVADLPAPFALQWRAGQSSLADVLGQFRA 196
BLAST of mRNA_L-elsbetiae_contig12952.2339.1 vs. uniprot
Match: L8HG57_ACACA (Fanconi anemia, complementation group L family protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HG57_ACACA) HSP 1 Score: 101 bits (251), Expect = 6.230e-22 Identity = 63/156 (40.38%), Postives = 80/156 (51.28%), Query Frame = 2 Query: 2 GRQYRVSMACPQGTRGAVDLAS-FRCDPELSALLAAKGVWETLRARLAQAEDLEGFVAELTDVLEKVLRACPKQE---------PPPAEFYSRLVEEIDAVGWSHLASMDSLLTSVQLREKDAAGREHVFAVSLPSDYPHSPPICSVDLPTTLDLR 439 G ++ V++ P+GT D A+ RC P L LA LR RLA++ D F+ E+ DVL K P FYSR+V EIDAVGWS L S + LT + LR D AGREH V L D+P + P+C+ DLP L LR Sbjct: 15 GTEWAVAVERPRGTERMGDAAARVRCSPALRRRLAPHRA--ALRHRLAESNDAHSFLVEVADVLSKTTXXXXXXXXXVRSGGVPPRGGGFYSRVVAEIDAVGWSKLVSANDSLTRLSLRTTDEAGREHRLEVELMPDHPRTAPVCTTDLPQALALR 168
BLAST of mRNA_L-elsbetiae_contig12952.2339.1 vs. uniprot
Match: A0A6J2V969_CHACN (E3 ubiquitin-protein ligase FANCL n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2V969_CHACN) HSP 1 Score: 98.2 bits (243), Expect = 8.700e-21 Identity = 53/145 (36.55%), Postives = 87/145 (60.00%), Query Frame = 2 Query: 5 RQYRVSMACPQGTRGAVDLASFRCDPELSALLAAKGVWETLRARLAQAEDLEGFVAELTDVLEKVLRACPK-QEPPPAEFYSRLVEEIDAVGWSHLASMDSLLTSVQLREKDAAGREHVFAVSLPSDYPHSPPICSVDLPTTLDL 436 R +R+ ++ QG++ + A+F C EL LL +G + ++ RL Q+ DL F+ EL V E L+ P+ Q PP ++YSRL+ E++A+GW L +D+ +++L+ +D++GR+H V L +YP P CS DLP L + Sbjct: 32 RDFRIRISLAQGSQ--LKQATFHCCWELRRLL--RGYQQIVKQRLHQSPDLVSFILELKAVTEVALKHRPECQTIPPPQYYSRLITEMEALGWDKLLFIDTEFRTLKLKGEDSSGRQHAITVHLKPEYPAEAPECSADLPVPLTI 172
BLAST of mRNA_L-elsbetiae_contig12952.2339.1 vs. uniprot
Match: A0A0M0K234_9EUKA (E3 ubiquitin-protein ligase fancl-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K234_9EUKA) HSP 1 Score: 95.5 bits (236), Expect = 7.870e-20 Identity = 52/127 (40.94%), Postives = 77/127 (60.63%), Query Frame = 2 Query: 62 ASFRCDPELSALLAAKGVWETLRARLAQ-AEDLEGFVAELTDVLEKVLRACPKQEPPPAEFYSRLVEEIDAVGWSHLASMDSLLTSVQLREKDAAGREHVFAVSLPSDYPHSPPICSVDLPTTLDLR 439 A F P L LL +G E + RL + ++D+ GF+AEL +++E+++R P PPA FY +V ++DAVGW+ + S+ + L ++L D AGR H + LP+DYPHSPP V LP+ LR Sbjct: 38 ARFEACPRLRQLL--EGQSEAVDQRLRRNSDDVAGFLAELGELVERLVRVEPPAALPPAAFYELIVRDLDAVGWNLVQSVSAALDELELLVVDGAGRGHTLGLVLPADYPHSPPKTRVSLPSPFALR 162
BLAST of mRNA_L-elsbetiae_contig12952.2339.1 vs. uniprot
Match: A0A2P6NXE8_9EUKA (E3 ubiquitin-protein ligase FANCL n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NXE8_9EUKA) HSP 1 Score: 94.4 bits (233), Expect = 1.710e-19 Identity = 52/141 (36.88%), Postives = 85/141 (60.28%), Query Frame = 2 Query: 2 GRQYRVSMACPQGTRGAVDLASFRCDPELSALLAAKGVWETLRARLAQAEDLEGFVAELTDVLEKVLRACPKQE-PPPAEFYSRLVEEIDAVGWSHLASMDSLLTSVQLREKDAAGREHVFAVSLPSDYPHSPPICSVDLP 421 G+ + +++ P G + D A C ELS LL KG+ + RL Q+++L F+ EL D+++ +L + ++ PPAEFYSRL+ E+D +GW+ L +D LT++QL D+ R H+ +++P +YP PP + DLP Sbjct: 28 GKDFLLAIELPNGPQNLKD-AELSCGEELSTLL--KGMEDK---RLNQSKNLTSFLMELKDLVQGLLISEEEKTFKPPAEFYSRLMMEMDTIGWNRLVHIDKTLTNIQLNTYDSRNRNHIVQLTIPKNYPSYPPQVTFDLP 162
BLAST of mRNA_L-elsbetiae_contig12952.2339.1 vs. uniprot
Match: A0A1S3AEE4_ERIEU (E3 ubiquitin-protein ligase FANCL n=1 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S3AEE4_ERIEU) HSP 1 Score: 94.4 bits (233), Expect = 2.360e-19 Identity = 52/149 (34.90%), Postives = 83/149 (55.70%), Query Frame = 2 Query: 2 GRQYRVSMACPQGTRGAVDLASFRCDPELSALLAAKGVWETLRARLAQAEDLEGFVAELTDVLEKVLRACPKQE----PPPAEFYSRLVEEIDAVGWSHLASMDSLLTSVQLREKDAAGREHVFAVSLPSDYPHSPPICSVDLPTTLDL 436 GR + + + PQ + + A C +L +L G ++ R+ + DL F+ EL +LE L+ KQ+ PPP +FYS ++EEIDA+GW L +D+ ++++L+ +DA+GREH+ + L S YP P CSVD P + Sbjct: 32 GRDFHLKILLPQDLQ--LKKARLLCSWQLRTIL--DGYHHVVQQRMQHSPDLMSFMMELKVILEAALKK--KQDLYALPPPPQFYSSVIEEIDALGWDKLDFVDTCFSTIKLKAEDASGREHLITLKLKSKYPAESPDCSVDFPVPFSV 174
BLAST of mRNA_L-elsbetiae_contig12952.2339.1 vs. uniprot
Match: UPI00188991F3 (E3 ubiquitin-protein ligase FANCL isoform X3 n=2 Tax=Pungitius pungitius TaxID=134920 RepID=UPI00188991F3) HSP 1 Score: 93.6 bits (231), Expect = 3.750e-19 Identity = 52/145 (35.86%), Postives = 82/145 (56.55%), Query Frame = 2 Query: 5 RQYRVSMACPQGTRGAVDLASFRCDPELSALLAAKGVWETLRARLAQAEDLEGFVAELTDVLEKVLRACPKQEP-PPAEFYSRLVEEIDAVGWSHLASMDSLLTSVQLREKDAAGREHVFAVSLPSDYPHSPPICSVDLPTTLDL 436 R +R+ + P G A C +L LL +G ++ RL Q+ DL FV EL VLE L++CP++ PP ++Y+RL+ E++ +GW L +D+ ++L+ +D++GR+HV V L + +P P CS DLP L L Sbjct: 31 RDFRLRVQLP--AEGQFKGARLHCCWQLKHLL--QGYEHIVKQRLQQSADLVTFVLELKTVLEVCLKSCPERRSIPPPQYYTRLISEMETLGWGRLLFIDTEFRMLRLKAEDSSGRQHVLTVKLRAKHPAEAPECSADLPVPLAL 171
BLAST of mRNA_L-elsbetiae_contig12952.2339.1 vs. uniprot
Match: UPI00188946AC (E3 ubiquitin-protein ligase FANCL isoform X1 n=2 Tax=Pungitius pungitius TaxID=134920 RepID=UPI00188946AC) HSP 1 Score: 93.6 bits (231), Expect = 5.020e-19 Identity = 52/145 (35.86%), Postives = 82/145 (56.55%), Query Frame = 2 Query: 5 RQYRVSMACPQGTRGAVDLASFRCDPELSALLAAKGVWETLRARLAQAEDLEGFVAELTDVLEKVLRACPKQEP-PPAEFYSRLVEEIDAVGWSHLASMDSLLTSVQLREKDAAGREHVFAVSLPSDYPHSPPICSVDLPTTLDL 436 R +R+ + P G A C +L LL +G ++ RL Q+ DL FV EL VLE L++CP++ PP ++Y+RL+ E++ +GW L +D+ ++L+ +D++GR+HV V L + +P P CS DLP L L Sbjct: 31 RDFRLRVQLP--AEGQFKGARLHCCWQLKHLL--QGYEHIVKQRLQQSADLVTFVLELKTVLEVCLKSCPERRSIPPPQYYTRLISEMETLGWGRLLFIDTEFRMLRLKAEDSSGRQHVLTVKLRAKHPAEAPECSADLPVPLAL 171
BLAST of mRNA_L-elsbetiae_contig12952.2339.1 vs. uniprot
Match: V9L8N8_CALMI (E3 ubiquitin-protein ligase FANCL-like protein (Fragment) n=1 Tax=Callorhinchus milii TaxID=7868 RepID=V9L8N8_CALMI) HSP 1 Score: 90.5 bits (223), Expect = 2.090e-18 Identity = 47/140 (33.57%), Postives = 77/140 (55.00%), Query Frame = 2 Query: 5 RQYRVSMACPQGTRGAVDLASFRCDPELSALLAAKGVWETLRARLAQAEDLEGFVAELTDVLEKVLR-ACPKQEPPPAEFYSRLVEEIDAVGWSHLASMDSLLTSVQLREKDAAGREHVFAVSLPSDYPHSPPICSVDLP 421 + +R+ + P+ + A +C +L +L +G ++ RL + DL F+ E VLE LR PPP ++Y++L++EI+ +GW LA MD +++L+ +D+ GREH+ A+ L S YP PP C D P Sbjct: 33 KDFRIRILLPKEKH--LRHARLQCSWQLKRVL--RGYQHVVKQRLQHSSDLVSFILEFKTVLEIALRNKLDLHAPPPPQYYTQLIKEIETLGWDKLAYMDPEFRTIKLKTEDSVGREHMIAIKLKSKYPAEPPDCLTDFP 168 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12952.2339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12952.2339.1 >prot_L-elsbetiae_contig12952.2339.1 ID=prot_L-elsbetiae_contig12952.2339.1|Name=mRNA_L-elsbetiae_contig12952.2339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp MACPQGTRGAVDLASFRCDPELSALLAAKGVWETLRARLAQAEDLEGFVAback to top mRNA from alignment at L-elsbetiae_contig12952:773..4921- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12952.2339.1 ID=mRNA_L-elsbetiae_contig12952.2339.1|Name=mRNA_L-elsbetiae_contig12952.2339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4149bp|location=Sequence derived from alignment at L-elsbetiae_contig12952:773..4921- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12952:773..4921- >mRNA_L-elsbetiae_contig12952.2339.1 ID=mRNA_L-elsbetiae_contig12952.2339.1|Name=mRNA_L-elsbetiae_contig12952.2339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig12952:773..4921- (Laminarionema elsbetiae ELsaHSoW15)back to top |