|
|
Homology
BLAST of mRNA_L-elsbetiae_contig12945.2334.1 vs. uniprot
Match: A0A8J9S3P1_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S3P1_PHATR) HSP 1 Score: 63.2 bits (152), Expect = 8.260e-10 Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query: 295 KLFDAFAARVGLSASSLRFFLDGSRIADPDETAVSLELEDRDSIDCFLEQ 444
K+FD +A R G+ ASSLRF LDG IA P+ T LELED+D IDC LEQ
Sbjct: 14 KVFDTYATRKGVQASSLRFLLDGETIA-PESTPKMLELEDQDQIDCMLEQ 62
BLAST of mRNA_L-elsbetiae_contig12945.2334.1 vs. uniprot
Match: A0A7S0ACW1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ACW1_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 2.190e-9 Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 292 GKLFDAFAARVGLSASSLRFFLDGSRIADPDETAVSLELEDRDSIDCFLEQ 444
GK+F A+A R G+S S+LRF LDG R+AD D+TA LELED D ID LEQ
Sbjct: 67 GKVFKAYAERKGISQSTLRFLLDGERVAD-DQTAKMLELEDGDQIDAVLEQ 116
BLAST of mRNA_L-elsbetiae_contig12945.2334.1 vs. uniprot
Match: A0A7S4JPZ0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JPZ0_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 4.080e-9 Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 292 GKLFDAFAARVGLSASSLRFFLDGSRIADPDETAVSLELEDRDSIDCFLEQ 444
GK+F A+A R G+ +++RF LDG RIAD D T SL++ED D IDCFLEQ
Sbjct: 81 GKVFAAYAQRKGIQQNAVRFLLDGDRIAD-DSTPESLDMEDGDQIDCFLEQ 130
BLAST of mRNA_L-elsbetiae_contig12945.2334.1 vs. uniprot
Match: A0A024FTW5_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FTW5_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 1.330e-7 Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query: 295 KLFDAFAARVGLSASSLRFFLDGSRIADPDETAVSLELEDRDSIDCFLEQ 444
K+F+A+A R + ++LRF LDG+RI D+T LELEDRD IDC LEQ
Sbjct: 47 KVFEAYAERKNIDVTALRFLLDGTRICG-DQTPKMLELEDRDQIDCALEQ 95
BLAST of mRNA_L-elsbetiae_contig12945.2334.1 vs. uniprot
Match: A0A7S3LIK8_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LIK8_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.890e-7 Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 295 KLFDAFAARVGLSASSLRFFLDGSRIADPDETAVSLELEDRDSIDCFLEQPWTGPWNSF 471
K+F+A+A R + +++LRF LDG RIA D T LELED+D IDC LEQ TG N +
Sbjct: 45 KVFEAYAQRKCVQSTALRFLLDGERIA-ADATPEKLELEDKDQIDCLLEQ--TGGKNCY 100
BLAST of mRNA_L-elsbetiae_contig12945.2334.1 vs. uniprot
Match: A0A1E7FWC5_9STRA (Small ubiquitin-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWC5_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 3.090e-7 Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 295 KLFDAFAARVGLSASSLRFFLDGSRIADPDETAVSLELEDRDSIDCFLEQ 444
K+F+ +A R G+ SSLRF LDG RIA+ T LEL+D+D IDC LEQ
Sbjct: 42 KVFNTYAQRKGVQMSSLRFLLDGERIAET-MTPQDLELDDQDQIDCMLEQ 90
BLAST of mRNA_L-elsbetiae_contig12945.2334.1 vs. uniprot
Match: A0A3M7GWP8_HORWE (Ubiquitin-like domain-containing protein n=1 Tax=Hortaea werneckii TaxID=91943 RepID=A0A3M7GWP8_HORWE) HSP 1 Score: 52.8 bits (125), Expect = 1.490e-5 Identity = 26/51 (50.98%), Postives = 33/51 (64.71%), Query Frame = 1
Query: 292 GKLFDAFAARVGLSASSLRFFLDGSRIADPDETAVSLELEDRDSIDCFLEQ 444
GK DAF+AR+ LRF +G R+ PD+T +SLELED D ID +EQ
Sbjct: 52 GKAMDAFSARLQKDTKELRFLSEGRRVL-PDQTPLSLELEDGDEIDVHMEQ 101
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 704 |
| Cds size | 444 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815476.4678817-UTR-L-elsbetiae_contig12945:208..284 | 1622815476.4678817-UTR-L-elsbetiae_contig12945:208..284 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12945 209..284 - |
| 1691682916.5561173-UTR-L-elsbetiae_contig12945:208..284 | 1691682916.5561173-UTR-L-elsbetiae_contig12945:208..284 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12945 209..284 - |
| 1622815476.5315526-UTR-L-elsbetiae_contig12945:4168..4352 | 1622815476.5315526-UTR-L-elsbetiae_contig12945:4168..4352 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12945 4169..4352 - |
| 1691682916.6136355-UTR-L-elsbetiae_contig12945:4168..4352 | 1691682916.6136355-UTR-L-elsbetiae_contig12945:4168..4352 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12945 4169..4352 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815476.4818256-CDS-L-elsbetiae_contig12945:284..290 | 1622815476.4818256-CDS-L-elsbetiae_contig12945:284..290 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12945 285..290 - |
| 1691682916.573529-CDS-L-elsbetiae_contig12945:284..290 | 1691682916.573529-CDS-L-elsbetiae_contig12945:284..290 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12945 285..290 - |
| 1622815476.4949434-CDS-L-elsbetiae_contig12945:1831..1887 | 1622815476.4949434-CDS-L-elsbetiae_contig12945:1831..1887 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12945 1832..1887 - |
| 1691682916.5846689-CDS-L-elsbetiae_contig12945:1831..1887 | 1691682916.5846689-CDS-L-elsbetiae_contig12945:1831..1887 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12945 1832..1887 - |
| 1622815476.5071464-CDS-L-elsbetiae_contig12945:2883..2947 | 1622815476.5071464-CDS-L-elsbetiae_contig12945:2883..2947 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12945 2884..2947 - |
| 1691682916.594499-CDS-L-elsbetiae_contig12945:2883..2947 | 1691682916.594499-CDS-L-elsbetiae_contig12945:2883..2947 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12945 2884..2947 - |
| 1622815476.5212917-CDS-L-elsbetiae_contig12945:3850..4168 | 1622815476.5212917-CDS-L-elsbetiae_contig12945:3850..4168 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12945 3851..4168 - |
| 1691682916.605566-CDS-L-elsbetiae_contig12945:3850..4168 | 1691682916.605566-CDS-L-elsbetiae_contig12945:3850..4168 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12945 3851..4168 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12945.2334.1 >prot_L-elsbetiae_contig12945.2334.1 ID=prot_L-elsbetiae_contig12945.2334.1|Name=mRNA_L-elsbetiae_contig12945.2334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
MIATNIPAVGSIGHHPPSRAGREPNLVQGQEDGENGGNCSTPSPRAWASR
RPPSASSSTAAASRTRTRRRCRSSSKTETRSTASWSSPGRVRGTLSLVAA
CCLDVEPTSRRGWRTRGAKPTWRSSPAGKHSRKVCRRRLPSRRSLKS* back to topmRNA from alignment at L-elsbetiae_contig12945:209..4352- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig12945.2334.1 ID=mRNA_L-elsbetiae_contig12945.2334.1|Name=mRNA_L-elsbetiae_contig12945.2334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4144bp|location=Sequence derived from alignment at L-elsbetiae_contig12945:209..4352- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAAGCCTATCTACAAAGGTTATCTCCGGGACTGGTGGGAGCGGCAGA
TCCTGTTCCTCTACATTGGATGTTCTGGAGTGCAGTGCAGGCGCGTTCTG
TATCGGCCGACCGAGCCAGCCGAGACTACTTCGCACACCAGCGACCGCAT
CCCTCTGGTATATGACAGAGACACTTGGCCATGAATGATCGCCACCAACA
TTCCCGCCGTTGGATCGATCGGTCATCACCCGCCCTCTCGCGCAGGGCGG
GAGCCAAACCTTGTTCAAGGTCAAGAGGACGGTGAGAATGGGGGAAATTG
TTCGACGCCTTCGCCGCGCGCGTGGGCCTCTCGGCGTCCTCCCTCCGCTT
CTTCCTCGACGGCAGCCGCATCGCGGACCCGGACGAGACGGCGGTGTCGC
TCGAGCTCGAAGACCGAGACTCGATCGACTGCTTCCTGGAGCAGCCCTGG
ACGGGTCCGTGGAACTCTTTCACTCGTGGCTGCCTGCTGCCTGGACGTGG
AGGTGTGTGTGTGTGTGTGCGTAAACGGGGTCCATGCATACATATTTCCG
CGATAAAAACATCGCAAGCAGGCACCGCAGGAGGGGGTCCACCCCCCCCC
CCCTCCTGTGTGACCCCGGTTGGGTCGTCTAGCTAGTCGTAGTGGAGGAA
GGGGGCCAGCGGGGCAGACGACGAATATGCCAATAATGGGAGGGAAGAAA
AAAGAAAAAAATGCATGTGTAGGCCGTGCCGCACAGAGCAAAGGTTTCCC
AGTCAAAAACTCATGACTCAGATCGATCCCATCCCACGCCGTGCGTGTCA
AGCAAAACGGGGCAGACCAGATGTTTTCCTTGTCAGAAGTCAAAACTCAG
ACCGACCGATCCCACCCCGCCCCGTGCGTGTTATGTTGGTAACATGCAGC
TCAAAGTCTTCGCGGAGGCGTGAAGGCAGGAGGGGTTTTATGGTTGACGA
ATGGGGCGTATCTCGCTCCAAGCAGCTCACGCCCTTAGGCCCGTTTTAAA
CATTCCAAATTCTCCTTCCAAAAATTGGAGCTTCCATTCCAATTAGAGAC
AGGCTCATTTTAACCAGTTGTGCTGCTTTTTTTTTTCACCCACATCGTTC
GAACTGACTATTTTGGATTTTGTCTATTTTGCTCGCCCCCGCCGCCAGGG
TTTGCCCAGACAAAGCGCTCTTTTTACGAATCAGCTCGTTTGACGACTAC
CGTAAAACCACACGAGATACCGGGGGGTGTGTTATCTTGTGTAATTTGCG
ATATGTGTGGTATGTATATGCTTCGCTTGTTTTGACCTTGACGACCGCCA
TGTATGCCTGTCGCACGACTGTTTTGTACCGCTTCCCTTGTCACGCGCTC
CTGTATTATCGCTCTCCCCCCCTCCGGCCTGGGCGACGCCGACGGCGACG
AACAGCCGACCAGCAGGCGCGGGTGGAGAACGAGGGGGGCCAAGCCCACG
TGGAGATCGAGCCCCGCAGGTACCGCAATCGGCTGCTCCTTACGTTTTGT
ATCTTGTCCATAGGGTTTGAGTTTGTCCATGATCGACCGTCGGTTTTCGG
GCGTTCCCTCCGCTACAAAAAATTATTTTGAAGCGCCATGCTGTATGAAC
GCGTTCCCTTCCCCGACGCAAAACTGAAGAAGCACGTCGATAAATAGCAT
ATGCCAATGCCCTGTATTCCACATTCTAGGACCTGGACGAAATGCGCTTG
GTGAAGAAGGTGTTGCCGTAACTTCTCTTCTCATCGTTGTACATACTAAC
CTGGACGAAATGCGCTTGGTGAAGAAGGTGTTGCCGTAACTTCTCTTCTC
ATCGTTGTACATACTATGGTACAGCAGCAGTACACATTCGTTTGCGAGTT
GTCTTGTTGTCTTTTCGCTCTTGCGTATTTTGGTCTGCCGCGCTCCAGCA
GTGCAGCGAGTGGACCAGTCGCAGCCGCTGCTGAAGCTGGTGCTTGTGAC
ACATGAGCGCTTCTGCGTGCTATACTACCAAAGTTGACTCAGTATCCACG
TTCAGACCTTGAAGCGGCCTCCCATTTGGGGCACATGCCTCCACGGTACT
GCGTATAGCGCCGTCTGTAACTTAGTCCTCATTTCCCCAAGATATTAGAA
GATACACTTCGGGTTCAAATCCGCTCTTTTGTAGCAGGAGCCGTAAGCCC
TGACCGCATTCGACTTGCTGCTATGTATACGTAGTCTTGAGATTAGGCTT
CAAGAGGCCCCGGCGAGTGAGTCCCGGTGGCGGGCGACACCCTAGCGTGT
TCCACACGCGCCCCAGCGCGTACCTTTTACCTTGTAGTATACCTTTTGGA
TTGGATGGCATGATTATTGGGGCTGCCCCAAAATTATGCTTTGGTATGTA
CCCAACAACGCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCGTAC
TGGTTGGGGGACGCCTGCGCTCCGCTCCCGCCGCCCTTCTTCCCGCCCCC
CGCTGTCGTCAACAGGGAAGCACTCGAGGAAAGTGTGCAGACGCCGCCTT
CCGTCCAGACGGAGCTTGAAGGTGAGAGTTTTGAGAAATACATGTACGGA
TTCATGTAGATCTGGTCCTTGTTCAGGCGGGCGAACATCTGCGCTGCTTG
TCTTCGGTCACACAAAAATGGCGCAGACGTGCGGAGGCACTTGCTTGTTA
CTCAAAGGCGAGCACACACCGCCGTTTCCATTAGCTTGTATATTATATGC
CTGAAACCTCTTTTGGTCCGTCCATCCTTTTTGTAAAAATGTTTGAAACC
AAAGTTTAAAAGCTATGTAAGCGATAAGACTGTTGTAAGCGACCCTGCGC
GCGCGGGTTCCGACACACGAAAACGTTTTTTGGAGCCGGCGAGAAAGATC
GGTCGACGCCCGTTTTTCAAAATAAACAATGAATCAAAGATGGAAACTAA
CCCACACTAGAGCAAGGACTCAATATGGGGTTCAAACGGTATTCCATACA
GTGATGTAATATTTGGCGAAGCGAGCAGAAAAACAAACCTAAATTACTGC
TGCATCTTTACTCGCCGCTTTGTCAAAAGCCCGGCGACGGCAAGTTGGTG
GTGTTTGTTGGCGCTCAATCTGGGGATTTGGGGCCAAGCGGCACACCTGT
GCGTGATTTGTATACATGTCGCTAGTCTATCTCTCATGTTTATACATATC
GCTGGTCTATCTCTCATGTTTCTACATGGATTAGTTTTATATTCGCCATG
CACCCCACCTCTGCCGGGTTTAAGGCGAGGTGCTCATGTAGGTCGACTCT
TCTAGGTGCGTTGATTCCGGGTTCAATGTTTGGAGAAATAACCTTGTGCC
AACCATTTTCTGCTCGAATCGGCGCAATGGACGAGTTGAATAGCTTGATC
ATACCAGTCTGACTGGTGATATAGCTGGGATTCGGAAATCCGGGAATATA
GCTGGGATTCTAGTTAGGCATGATCAACACATATTTGGCTTGTGAAACTC
CGCAGCAATGCTCCCACAGCCTGTTGAAGATGGAAAAATGAGAAACCCCA
ACCGAAAAAGCGGGGGTAGATCATTATCACCCCCCCCCCCGGTTTCCGAC
GACTTTTCTGGCAAGGAAAATCAACAATTTTCAACATCCCGGTACGACTT
CAAAAAACGTTTTTTTAAACCATTTTTTTCGTTGTGTCTGTTAGCCCCCT
GGCCTCCTGTGCCGATCCTGCCTGCTTTAATTTAACACTTACAATGGCTT
CAACCGGTGAAAATAAAAAAATGTAAGTAAAGTTGGCATTTCGTGCGCAA
ATTTGTTTTTGGAAAAACAAATGGAAAAAAAAGGTGTTCAAAGTTTTAGC
AAAAGAAATGACGTTTCCGGGGCTCGAACACGCGTCTCAAAACTCGAAGT
CTGGGCGAAGATATTGGCTTTCCCGTCGAATCCCAGCTATATCACCGGTC
AGACTGGTACATAGATAGCTGCCTTCGTAGAGGTGGAGCGCGCTTTGGGT
GGCTTGACTACTTGACTGACGCGTTCCTGATCGTAGTCCCTCATCTTCCT
CTCCTCTCTTCTCTTGTCTTCTCTCGCTCCGACGACGACGACGACGACGT
GTGCCACGTCAGAGTTGAAGAAGGGGAATGCTGATCTCGAACAAGCCCGG
TCGAAGCTGGAGCGATGGACGCTGCTGGTGACGATGCTGGCGCT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig12945:209..4352- >mRNA_L-elsbetiae_contig12945.2334.1 ID=mRNA_L-elsbetiae_contig12945.2334.1|Name=mRNA_L-elsbetiae_contig12945.2334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig12945:209..4352- (Laminarionema elsbetiae ELsaHSoW15)
ATGATCGCCACCAACATTCCCGCCGTTGGATCGATCGGTCATCACCCGCC
CTCTCGCGCAGGGCGGGAGCCAAACCTTGTTCAAGGTCAAGAGGACGGTG
AGAATGGGGGAAATTGTTCGACGCCTTCGCCGCGCGCGTGGGCCTCTCGG
CGTCCTCCCTCCGCTTCTTCCTCGACGGCAGCCGCATCGCGGACCCGGAC
GAGACGGCGGTGTCGCTCGAGCTCGAAGACCGAGACTCGATCGACTGCTT
CCTGGAGCAGCCCTGGACGGGTCCGTGGAACTCTTTCACTCGTGGCTGCC
TGCTGCCTGGACGTGGAGATGATCGCCACCAACATTCCCGCCGTTGGATC
GATCGGTCATCACCCGCCCTCTCGCGCAGGGCGGGAGCCAAACCTTGTTC
AAGGTCAAGAGGACGGTGAGAATGGGGGAAATTGTTCGACGCCTTCGCCG
CGCGCGTGGGCCTCTCGGCGTCCTCCCTCCGCTTCTTCCTCGACGGCAGC
CGCATCGCGGACCCGGACGAGACGGCGGTGTCGCTCGAGCTCGAAGACCG
AGACTCGATCGACTGCTTCCTGGAGCAGCCCTGGACGGGTCCGTGGAACT
CTTTCACTCGTGGCTGCCTGCTGCCTGGACGTGGAGCCGACCAGCAGGCG
CGGGTGGAGAACGAGGGGGGCCAAGCCCACGTGGAGATCGAGCCCCGCAG
CCGACCAGCAGGCGCGGGTGGAGAACGAGGGGGGCCAAGCCCACGTGGAG
ATCGAGCCCCGCAGGGAAGCACTCGAGGAAAGTGTGCAGACGCCGCCTTC
CGTCCAGACGGAGCTTGAAGGGAAGCACTCGAGGAAAGTGTGCAGACGCC
GCCTTCCGTCCAGACGGAGCTTGAAGAGTTGAAGTTGA back to top
|