mRNA_L-elsbetiae_contig12942.2332.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12942.2332.1
Unique NamemRNA_L-elsbetiae_contig12942.2332.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12942.2332.1 vs. uniprot
Match: D7G0G8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G8_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 2.510e-70
Identity = 120/189 (63.49%), Postives = 145/189 (76.72%), Query Frame = 1 
Query: 1246 VLDAIRDAIDELLANKSGEGGWENGVSEREVQPLVDLAHTLPDPFAGVTVNPIQEGSKGCFNLPGDIDGLARRCLKGAATTDGEGVGVPVANDGQGECFWIALASGALNARCSHGGAALALRAASLRMALLKIVPFLSTAGYLAAFCSGQLFEAKEHEMVERLAGRQWFMDMPPDVARLYYLCAVTNHC 1812
            +L  I+DAID+L A +SGE  WE GV+E EV+ LV +A  L DPFAG  +NPI++G  GCFNLP D D LA RCL+GAAT+DG  VG+PVANDG G C WIALASGAL+ RCS GGAALALR A++RMALLK   FLS  GYLA + S  LF+ KEH+MV +LAGR+W  ++ PDVAR+YYLCAV N+C
Sbjct:    1 MLARIKDAIDDLFAKRSGERAWEKGVTEAEVRHLVSMAAGLLDPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGQVGIPVANDGLGACVWIALASGALSERCSTGGAALALRTAAMRMALLKSPEFLSRDGYLAEYRSPDLFDLKEHDMVLKLAGREWTENISPDVARMYYLCAVRNNC 189
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BLAST of mRNA_L-elsbetiae_contig12942.2332.1 vs. uniprot
Match: A0A6H5JT31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT31_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 6.940e-68
Identity = 123/196 (62.76%), Postives = 146/196 (74.49%), Query Frame = 1 
Query: 1228 DVQSEHVLDAIRDAIDELLANKSG-EGGWENGVSEREVQPLVDLAHTLPDPFAGVTVNPIQEGSKGCFNLPGDIDGLARRCLKGAATTDGEGVGVPVANDGQGECFWIALASGALNARCSHGGAALALRAASLRMALLKIVPFLSTAGYLAAFCSGQLFEAKEHEMVERLAGRQWFMDMPPDVARLYYLCAVTNHC 1812
            D +++ VL  I D+ID   A + G    W+NGVS REVQ LV L  ++PDPFAG  +NPI E   GCFNLP DID LA RCL+GAAT+DG GVGVPV N+G+G CFWIALASGALN RCS GGAALALR  ++RMALLK   FLS  GYLA + SG LF+ KEH+MV +LAGR W M+M  DVARLYYLCA+ ++C
Sbjct:    2 DDRNKAVLATIEDSIDVFFAKREGGTEAWKNGVSAREVQGLVSLGASIPDPFAGFKLNPIPEADSGCFNLPEDIDKLASRCLEGAATSDGGGVGVPVVNEGKGACFWIALASGALNTRCSTGGAALALRTGAMRMALLKCEEFLSADGYLAEYRSGDLFDTKEHDMVMKLAGRVWPMNMSADVARLYYLCAIRSNC 197
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12942.2332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0G8_ECTSI2.510e-7063.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT31_9PHAE6.940e-6862.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12942contigL-elsbetiae_contig12942:364..4051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_002310.1
Exons4
Model size2268
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12942.2332.1prot_L-elsbetiae_contig12942.2332.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12942 742..1743 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815476.2965517-UTR-L-elsbetiae_contig12942:363..7411622815476.2965517-UTR-L-elsbetiae_contig12942:363..741Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12942 364..741 -
1691682916.4812207-UTR-L-elsbetiae_contig12942:363..7411691682916.4812207-UTR-L-elsbetiae_contig12942:363..741Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12942 364..741 -
1622815476.329403-UTR-L-elsbetiae_contig12942:1743..17801622815476.329403-UTR-L-elsbetiae_contig12942:1743..1780Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12942 1744..1780 -
1691682916.5172124-UTR-L-elsbetiae_contig12942:1743..17801691682916.5172124-UTR-L-elsbetiae_contig12942:1743..1780Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12942 1744..1780 -
1622815476.3418224-UTR-L-elsbetiae_contig12942:2177..23341622815476.3418224-UTR-L-elsbetiae_contig12942:2177..2334Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12942 2178..2334 -
1691682916.526929-UTR-L-elsbetiae_contig12942:2177..23341691682916.526929-UTR-L-elsbetiae_contig12942:2177..2334Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12942 2178..2334 -
1622815476.3556435-UTR-L-elsbetiae_contig12942:3036..40511622815476.3556435-UTR-L-elsbetiae_contig12942:3036..4051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12942 3037..4051 -
1691682916.5354373-UTR-L-elsbetiae_contig12942:3036..40511691682916.5354373-UTR-L-elsbetiae_contig12942:3036..4051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12942 3037..4051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815476.3073306-CDS-L-elsbetiae_contig12942:741..12211622815476.3073306-CDS-L-elsbetiae_contig12942:741..1221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12942 742..1221 -
1691682916.4943824-CDS-L-elsbetiae_contig12942:741..12211691682916.4943824-CDS-L-elsbetiae_contig12942:741..1221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12942 742..1221 -
1622815476.3176482-CDS-L-elsbetiae_contig12942:1542..17431622815476.3176482-CDS-L-elsbetiae_contig12942:1542..1743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12942 1543..1743 -
1691682916.5078785-CDS-L-elsbetiae_contig12942:1542..17431691682916.5078785-CDS-L-elsbetiae_contig12942:1542..1743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12942 1543..1743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12942.2332.1

>prot_L-elsbetiae_contig12942.2332.1 ID=prot_L-elsbetiae_contig12942.2332.1|Name=mRNA_L-elsbetiae_contig12942.2332.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=227bp
MANKFDDVQSEHVLDAIRDAIDELLANKSGEGGWENGVSEREVQPLVDLA
HTLPDPFAGVTVNPIQEGSKGCFNLPGDIDGLARRCLKGAATTDGEGVGV
PVANDGQGECFWIALASGALNARCSHGGAALALRAASLRMALLKIVPFLS
TAGYLAAFCSGQLFEAKEHEMVERLAGRQWFMDMPPDVARLYYLCAVTNH
CSRRCITGNRIKRRHAGGLWSHPRRY*
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mRNA from alignment at L-elsbetiae_contig12942:364..4051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12942.2332.1 ID=mRNA_L-elsbetiae_contig12942.2332.1|Name=mRNA_L-elsbetiae_contig12942.2332.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3688bp|location=Sequence derived from alignment at L-elsbetiae_contig12942:364..4051- (Laminarionema elsbetiae ELsaHSoW15)
GGAGGAGGGAGTGAGGTGCCATGTGAAGATTTCATGATCAACATTGCCGC
GGCATTCGCATGCACTGCTGTTCACGTGAGTCAAACCAATCGAAGAGCCG
CTTGCGTGACCCGACTCTAAAACACATGACAGATGCCTTTTATGACAGCA
TGACAGCGGCAATCCACATCTGTGTGTGTGTGTGTGTGTGTCCTTCCCAT
TTATTTTGGCGACAGTCCCCCCAAGTGGAGACATATACATCTTGTGTGCA
AGCGCCCAATTGGCCCCGAGTGAGCCAACTGTGTTCAGGGGACAGGCTTG
TAACTGACCCACGCGCTCCAAATACACAGTAACACACATGCGCACACCGC
GCACGCGCACAACCACGGCGCATGCTTCGACGCGACTCCCACAAAAACAC
AAAAGGCTCGCACGCAAGAGTCGTTGGAAGCCATAGACAGCAGTGATATT
TCGTACAATATGCGCATTTCTCTCCCTCGCTTTCGTGAGGGCAAAGCCCG
CCAAAACTGTGCGCGTGAAATAGCAGTGCTGACAACGGTGGGAAAAAGCC
CCCTCTGAACCGTAACATTTTGAAACCACTGTTTATGGCAAACAAATCTT
GATCTCGATTTTTTTGTATCTAGCCAAGATAACCCGGGTTGCAGGGGGCT
CCGTATGGCACTTTTGAATTTTTGTTCACGACTACGATATTTCGGAACCC
CCGTTAGCTGTTGGGCTACGCACTTATTCCTCAACAGCGCAGGCTGTAGT
TTGGATCCAAAATTATTCCACCCTCCAAATGAATCTGTAACAAGTCCTCT
ACAGTCTGGTACCATCGTGACCCATTTTAGAGGAAGTTTTCGGTGGGACC
CACGGCGCTGAAGTTTCGTTGGGGGTGTGGTATCTTCAGTAGAATCAGCA
CCGGGTTGTTCTGCTTCTCTCCACGCAACAAGCAAGCACGGACTCCCTGG
ACAGCGTAGGAGGCCCGCGGAAGCCACACGAAGTCCGCTACCATATCTGG
ACTGTGGACACGAATGTGAGCTGTCGGCATGGTCCTTTTTGTCGAAAGAG
TGAACATGTGTAAGCCAAACGTCCGCATACAGCAGCAGTGATCTAGCCGG
CGGAGCAAGATATATTCCGCCTGTGCGCCGCTCAGCAGATGGCGAACCTG
TTTAAGCGTTCACAGGCAGTCACTAACGGGGTGTGCTAGAGAGCAGGTGA
AGTTGTAGGGACGGGGGCAATCACAAAACTAGATTTGCAGCACGGAAGCT
GTTTGCGCGGTCTCCAACCAGTTTGAAGTTTCGAAACCTGCAGACTCTGC
GTGTCTTAGCAAAAGTGCTAGCCACGTGTACGCATTTTAGCTAGTGAGCA
AGCTTGGGAGACTAGGAGCCACTGAACCAACACACTGCTGATCGTTTGTG
CACTTATTGCTGTACCCCAAGGTGTTTTTGTTTGTTTGCAGCGTAGCCCA
TGATGGCATGATAGATGTAGAATGTTCTAATCTTCTTGTAGAACATCAGT
AGTATCTATGTAGATATGTATGTATGGAATACTTACATGTATCATCTACA
TAGTCTATATCTATATATACACTTCTATATATATATACAAGATCACCCTT
CGGAGCGAGCTCATGAGAGCACGGACGGGGGTGATGCAAGACGAAAGAAA
AAAGAATAACCCAGATCTTTGAACCAAAGATTCTGAACTCGAACGCCTCT
TTTCCCGCAAAAAGCAGGTCCTTAATTAATCGCCACGTTATACATCAGAC
GAAACAGCTGCCCTCCTAAGCACAGCAACAGCACCAACCGGGTGCTTCTG
TGTGGGCGCTCCGCCCTTGATCAACACGCTCCGCCTTTGTCGACACAGCT
GTGCAGGTCAACACAGCTGCGCAGGTCTGTGCCCCTCAGCCGTGTGTTAC
TTGTACCGAAAAAAAAAACAGCTGCTGCTGCTGACGTGTTTTTCTTCAAC
TGCAAGAGGCAGCTGCTGTCACCCTGACGTTCGTTCGGGCCATTGAGGGC
CGACAGCCTACCGACAGCCTAATGATGACATATCGGAACAGTAGTTTTCC
CGTTCAAATGTATCATTGTATTTTTATATATGTATATACTCCGTATGTCT
TATGTACGATGATGTACGACTGTATCATACATACTGAGCACACGAGGTTG
GTTGTAAGATTAGATGGCGCCGGACGAAGAGAACACGTGACCCTGCTTTC
GTGGAAATGATATTTCGTCTTTAATCAAGAAACGAAAGGGTAACCACGCT
TCTGCCGCTTCTGCCACGCAGGGATGGGAAGAACTGTCTACGAGTTACAG
GAAATGAGATGGCGAACAAATTCGATGATGTACAAAGCGAACACGTGTTG
GATGCCATCCGAGATGCGATTGATGAACTTCTGGCGAACAAGAGCGGTGA
AGGCGGGTGGGAGAATGGCGTGTCGGAGAGAGAAGTCCAACCTCTGGTTG
ACTTGGCACACACTTTGCCAGATCCCTTTGCCGGTGTCACGGTGAATCCA
ATCCAAGAGGTAAGACGATGTCTCTCGTTTCGACGTACGATTTCAATCGC
TGAGAAATGACACGCATGCATGTGTGCTGAAAAAGTTGGAAAATAAACGC
ACGTGGTGTTTGAAGAAGCCCGGAATGCGTGTCACCCCTCTTTAATAAAG
CCCCCCGACGTGATGTTCCCGAAAACATGTCACACGACCGTGCTGTGGTT
GAAAAACGTGTAGAAAAATGCTTGTCGCTTTCTTTGCGGAGGTTTTGGGA
GGATGCTGTATCAAATCAATTATATGATCCCATATATGATGATCCGTACC
ACAACGAAACCCTTCTCAATGTCTCGGTAGGGAAGCAAAGGCTGCTTCAA
TCTTCCCGGAGACATCGACGGCCTAGCAAGGCGCTGTTTGAAGGGGGCAG
CGACAACAGACGGCGAGGGTGTAGGGGTCCCTGTTGCAAACGACGGCCAG
GGCGAGTGCTTTTGGATTGCGCTTGCATCCGGGGCCCTGAACGCCCGGTG
CTCCCATGGAGGTGCTGCACTTGCCCTCCGGGCCGCCTCCCTTCGGATGG
CACTGCTCAAAATAGTGCCGTTCCTCAGCACGGCCGGATACCTGGCGGCA
TTCTGTTCGGGTCAACTCTTCGAAGCCAAAGAGCACGAGATGGTGGAGCG
ACTTGCAGGTCGTCAGTGGTTCATGGACATGCCACCGGACGTGGCTCGCC
TCTACTATCTTTGCGCTGTCACAAACCACTGCAGTCGTAGATGTATTACC
GGGAATCGCATCAAGCGACGACACGCTGGCGGCCTGTGGTCACATCCTCG
ACGATATTGAACTTTATGCATTCGAAACGGGGCAGGGTGACTAGTTGTGT
TCCATGGGTAGTGTGCGTGCCTTTGGGAAGATGCCTGCTTTAATCTTCAA
GCGAGAGTTAGTACTTATTGGTGCTGACAGATCTGTTAGGTTCTTGAACG
TGTCATGCATGTGTGTATGTCTGTAAATCGTATGAGATGTGTGGAAACGA
AATAGGTACAGCATTTAAATCGTATCTCATGTTCTTGAAAAGAAAGTTCT
GTTTTGGAAAGCCCTAGATATATATACTACGCTGTCGGTGCATCTACATC
CACAAAAGAAGTGGACAAATCGCCCAGAGTTTTATTTTAGCCAAACAAGC
ACTGTTTTGGCAAGCCCTACATATACATACACATCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12942:364..4051-

>mRNA_L-elsbetiae_contig12942.2332.1 ID=mRNA_L-elsbetiae_contig12942.2332.1|Name=mRNA_L-elsbetiae_contig12942.2332.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1362bp|location=Sequence derived from alignment at L-elsbetiae_contig12942:364..4051- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAACAAATTCGATGATGTACAAAGCGAACACGTGTTGGATGCCAT
CCGAGATGCGATTGATGAACTTCTGGCGAACAAGAGCGGTGAAGGCGGGT
GGGAGAATGGCGTGTCGGAGAGAGAAGTCCAACCTCTGGTTGACTTGGCA
CACACTTTGCCAGATCCCTTTGCCGGTGTCACGGTGAATCCAATCCAAGA
GATGGCGAACAAATTCGATGATGTACAAAGCGAACACGTGTTGGATGCCA
TCCGAGATGCGATTGATGAACTTCTGGCGAACAAGAGCGGTGAAGGCGGG
TGGGAGAATGGCGTGTCGGAGAGAGAAGTCCAACCTCTGGTTGACTTGGC
ACACACTTTGCCAGATCCCTTTGCCGGTGTCACGGTGAATCCAATCCAAG
AGGGAAGCAAAGGCTGCTTCAATCTTCCCGGAGACATCGACGGCCTAGCA
AGGCGCTGTTTGAAGGGGGCAGCGACAACAGACGGCGAGGGTGTAGGGGT
CCCTGTTGCAAACGACGGCCAGGGCGAGTGCTTTTGGATTGCGCTTGCAT
CCGGGGCCCTGAACGCCCGGTGCTCCCATGGAGGTGCTGCACTTGCCCTC
CGGGCCGCCTCCCTTCGGATGGCACTGCTCAAAATAGTGCCGTTCCTCAG
CACGGCCGGATACCTGGCGGCATTCTGTTCGGGTCAACTCTTCGAAGCCA
AAGAGCACGAGATGGTGGAGCGACTTGCAGGTCGTCAGTGGTTCATGGAC
ATGCCACCGGACGTGGCTCGCCTCTACTATCTTTGCGCTGTCACAAACCA
CTGCAGTCGTAGATGTATTACCGGGAATCGCATCAAGCGACGACACGCTG
GCGGCCTGTGGTCACATCCTCGACGATATTGAGGAAGCAAAGGCTGCTTC
AATCTTCCCGGAGACATCGACGGCCTAGCAAGGCGCTGTTTGAAGGGGGC
AGCGACAACAGACGGCGAGGGTGTAGGGGTCCCTGTTGCAAACGACGGCC
AGGGCGAGTGCTTTTGGATTGCGCTTGCATCCGGGGCCCTGAACGCCCGG
TGCTCCCATGGAGGTGCTGCACTTGCCCTCCGGGCCGCCTCCCTTCGGAT
GGCACTGCTCAAAATAGTGCCGTTCCTCAGCACGGCCGGATACCTGGCGG
CATTCTGTTCGGGTCAACTCTTCGAAGCCAAAGAGCACGAGATGGTGGAG
CGACTTGCAGGTCGTCAGTGGTTCATGGACATGCCACCGGACGTGGCTCG
CCTCTACTATCTTTGCGCTGTCACAAACCACTGCAGTCGTAGATGTATTA
CCGGGAATCGCATCAAGCGACGACACGCTGGCGGCCTGTGGTCACATCCT
CGACGATATTGA
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