mRNA_L-elsbetiae_contig12935.2327.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12935.2327.1
Unique NamemRNA_L-elsbetiae_contig12935.2327.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12935.2327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12935contigL-elsbetiae_contig12935:3403..4863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size931
Cds size927
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815475.7511919-CDS-L-elsbetiae_contig12935:3402..35171622815475.7511919-CDS-L-elsbetiae_contig12935:3402..3517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12935 3403..3517 +
1691682916.1547563-CDS-L-elsbetiae_contig12935:3402..35171691682916.1547563-CDS-L-elsbetiae_contig12935:3402..3517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12935 3403..3517 +
1622815475.7613385-CDS-L-elsbetiae_contig12935:4049..48611622815475.7613385-CDS-L-elsbetiae_contig12935:4049..4861Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12935 4050..4861 +
1691682916.170004-CDS-L-elsbetiae_contig12935:4049..48611691682916.170004-CDS-L-elsbetiae_contig12935:4049..4861Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12935 4050..4861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12935.2327.1prot_L-elsbetiae_contig12935.2327.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12935 3403..4861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12935.2327.1

>prot_L-elsbetiae_contig12935.2327.1 ID=prot_L-elsbetiae_contig12935.2327.1|Name=mRNA_L-elsbetiae_contig12935.2327.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=309bp
TVFGACEARLAEALVGRGGGSGSSSSKLQRTASFGLGKAARTAHGPLPVT
AFSAVGETRQPPPLPREGRNSSSSNANNNNNNNTGDGDTETTAAATTAQP
RPALAPSHSLSGTGQETERDRDRDRDQPGSPAGRASGTAGAAEEAAAAAA
AATAAAGVLVAPVAVSTADATAGGIPPPAPTQCAGCLPGGGVFGRWRRGA
RRQSGDGNPGPADVTGRGGGEGGGGGNGSAHKVGETGGAGTGKKSWAGSG
GGVTRVPAAKKTSSGDMGGGVATARSAAAKAAAGLSKPVASAGGAFTLEE
AEGLATSDW
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mRNA from alignment at L-elsbetiae_contig12935:3403..4863+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12935.2327.1 ID=mRNA_L-elsbetiae_contig12935.2327.1|Name=mRNA_L-elsbetiae_contig12935.2327.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1461bp|location=Sequence derived from alignment at L-elsbetiae_contig12935:3403..4863+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGTGTTCGGTGCCTGCGAGGCGAGGCTTGCGGAGGCGCTCGTCGGCAG
GGGTGGAGGGTCCGGGTCATCGTCCTCCAAGCTCCAAAGGACTGCTAGTT
TCGGGCTCGGGAAAGGTGAGTCGCGTTTTTCGTTGTGGCTTGCTGTGGAC
GGGGAGAAGCTAGCGGCACTGCGTGCTGCACAGTGAACAAGCCGAGATGA
AACCTGTTGGACTTGTCCTTCCTGACTCGCGTCTTCTAACAACGGTGGGT
TGCAATGCTAAGTGAAATGGGGGACGGAGAGGATCGGAACGTGGTGGGGT
ACTTTCCTGTGCATTGCGTTGCACGATAACGCATGCAATGTATATAGATA
TCTAGTGCAGGAAAAGGCAAAACCTGTCTTGTTTTTTGTTTTGTTTTCGA
GATTTTTTTTAGGTTGCTGCTGCTCTCTATGTATGAGTGCTGTTGTTGGG
AGTTGGTGCCGCTCCTCGTACGCTGTGGGCAACTATCACTATTGACGCCG
CCCTCCCAGTGAGTAGTCCCGCCCGTGCGATTTCTTCAGGCCGGGAAGGC
ATGCAGCCGATCGCCTTGCTCCAACCCGCCCTCTCTCCGCTTCCCCACTG
GCAAAACTCGTTCCGCCTAAATAAACAACACGGCTTGTTCCCCGCAGCCG
CCCGCACCGCCCACGGGCCACTACCTGTCACGGCCTTCTCTGCGGTAGGC
GAGACGCGCCAGCCGCCACCTTTGCCCAGAGAGGGGCGCAACAGCAGCAG
CAGCAACGCAAACAACAACAACAACAACAACACCGGCGACGGGGACACCG
AAACCACCGCCGCCGCCACCACCGCTCAACCGCGCCCCGCCCTCGCGCCG
TCCCACTCGCTCTCGGGCACCGGGCAAGAAACCGAGCGGGATCGGGATCG
AGATCGGGACCAGCCCGGCTCGCCAGCGGGGAGGGCCTCTGGTACAGCTG
GCGCTGCTGAAGAAGCAGCAGCAGCAGCAGCAGCGGCGACGGCGGCGGCT
GGGGTGTTGGTGGCGCCCGTGGCAGTATCCACCGCCGACGCCACCGCCGG
GGGTATCCCCCCTCCTGCCCCTACCCAGTGCGCGGGGTGCTTGCCCGGCG
GCGGCGTGTTCGGCCGGTGGCGCCGAGGCGCACGGCGCCAAAGCGGCGAC
GGTAACCCCGGTCCCGCCGATGTGACCGGTCGCGGGGGGGGCGAGGGCGG
CGGCGGCGGCAACGGTAGCGCCCACAAGGTTGGCGAGACTGGCGGTGCCG
GCACGGGTAAGAAGTCTTGGGCGGGCAGCGGCGGCGGTGTCACCCGGGTG
CCGGCGGCGAAAAAAACGAGCTCGGGCGACATGGGCGGAGGGGTGGCCAC
CGCTCGCTCGGCTGCTGCGAAAGCGGCGGCGGGTTTGAGCAAGCCGGTCG
CGTCGGCGGGCGGCGCGTTTACGCTGGAGGAAGCCGAGGGGCTCGCCACC
AGTGACTGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12935:3403..4863+

>mRNA_L-elsbetiae_contig12935.2327.1 ID=mRNA_L-elsbetiae_contig12935.2327.1|Name=mRNA_L-elsbetiae_contig12935.2327.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1854bp|location=Sequence derived from alignment at L-elsbetiae_contig12935:3403..4863+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGTGTTCGGTGCCTGCGAGGCGAGGCTTGCGGAGGCGCTCGTCGGCAG
GGGTGGAGGGTCCGGGTCATCGTCCTCCAAGCTCCAAAGGACTGCTAGTT
TCGGGCTCGGGAAAGACGGTGTTCGGTGCCTGCGAGGCGAGGCTTGCGGA
GGCGCTCGTCGGCAGGGGTGGAGGGTCCGGGTCATCGTCCTCCAAGCTCC
AAAGGACTGCTAGTTTCGGGCTCGGGAAAGCCGCCCGCACCGCCCACGGG
CCACTACCTGTCACGGCCTTCTCTGCGGTAGGCGAGACGCGCCAGCCGCC
ACCTTTGCCCAGAGAGGGGCGCAACAGCAGCAGCAGCAACGCAAACAACA
ACAACAACAACAACACCGGCGACGGGGACACCGAAACCACCGCCGCCGCC
ACCACCGCTCAACCGCGCCCCGCCCTCGCGCCGTCCCACTCGCTCTCGGG
CACCGGGCAAGAAACCGAGCGGGATCGGGATCGAGATCGGGACCAGCCCG
GCTCGCCAGCGGGGAGGGCCTCTGGTACAGCTGGCGCTGCTGAAGAAGCA
GCAGCAGCAGCAGCAGCGGCGACGGCGGCGGCTGGGGTGTTGGTGGCGCC
CGTGGCAGTATCCACCGCCGACGCCACCGCCGGGGGTATCCCCCCTCCTG
CCCCTACCCAGTGCGCGGGGTGCTTGCCCGGCGGCGGCGTGTTCGGCCGG
TGGCGCCGAGGCGCACGGCGCCAAAGCGGCGACGGTAACCCCGGTCCCGC
CGATGTGACCGGTCGCGGGGGGGGCGAGGGCGGCGGCGGCGGCAACGGTA
GCGCCCACAAGGTTGGCGAGACTGGCGGTGCCGGCACGGGTAAGAAGTCT
TGGGCGGGCAGCGGCGGCGGTGTCACCCGGGTGCCGGCGGCGAAAAAAAC
GAGCTCGGGCGACATGGGCGGAGGGGTGGCCACCGCTCGCTCGGCTGCTG
CGAAAGCGGCGGCGGGTTTGAGCAAGCCGGTCGCGTCGGCGGGCGGCGCG
TTTACGCTGGAGGAAGCCGAGGGGCTCGCCACCAGTGACTGGCCGCCCGC
ACCGCCCACGGGCCACTACCTGTCACGGCCTTCTCTGCGGTAGGCGAGAC
GCGCCAGCCGCCACCTTTGCCCAGAGAGGGGCGCAACAGCAGCAGCAGCA
ACGCAAACAACAACAACAACAACAACACCGGCGACGGGGACACCGAAACC
ACCGCCGCCGCCACCACCGCTCAACCGCGCCCCGCCCTCGCGCCGTCCCA
CTCGCTCTCGGGCACCGGGCAAGAAACCGAGCGGGATCGGGATCGAGATC
GGGACCAGCCCGGCTCGCCAGCGGGGAGGGCCTCTGGTACAGCTGGCGCT
GCTGAAGAAGCAGCAGCAGCAGCAGCAGCGGCGACGGCGGCGGCTGGGGT
GTTGGTGGCGCCCGTGGCAGTATCCACCGCCGACGCCACCGCCGGGGGTA
TCCCCCCTCCTGCCCCTACCCAGTGCGCGGGGTGCTTGCCCGGCGGCGGC
GTGTTCGGCCGGTGGCGCCGAGGCGCACGGCGCCAAAGCGGCGACGGTAA
CCCCGGTCCCGCCGATGTGACCGGTCGCGGGGGGGGCGAGGGCGGCGGCG
GCGGCAACGGTAGCGCCCACAAGGTTGGCGAGACTGGCGGTGCCGGCACG
GGTAAGAAGTCTTGGGCGGGCAGCGGCGGCGGTGTCACCCGGGTGCCGGC
GGCGAAAAAAACGAGCTCGGGCGACATGGGCGGAGGGGTGGCCACCGCTC
GCTCGGCTGCTGCGAAAGCGGCGGCGGGTTTGAGCAAGCCGGTCGCGTCG
GCGGGCGGCGCGTTTACGCTGGAGGAAGCCGAGGGGCTCGCCACCAGTGA
CTGG
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