mRNA_L-elsbetiae_contig12934.2326.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12934.2326.1
Unique NamemRNA_L-elsbetiae_contig12934.2326.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12934.2326.1 vs. uniprot
Match: A0A6H5JS08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS08_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 6.100e-34
Identity = 71/144 (49.31%), Postives = 81/144 (56.25%), Query Frame = 3 
Query:    3 GAPNLSLLCAAPRRQAYASTMFQPSEECSYLFRSWSPCWANECRRVTAREYGCALRQKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSARDEWDLEAAPGQGGWRGEGEGRGGAPREDEEEEWQECGTPFRHNLLQV 434
            G PNLSLLCAAPRRQA++STMFQPS ECSYLFRSW  CW +ECR VT REYGCALRQ+A                                  R  RD+WD+EA    G W       G +  ++  EE QECGT FR +LLQV
Sbjct:  153 GTPNLSLLCAAPRRQAFSSTMFQPSSECSYLFRSWDQCWVDECREVTKREYGCALRQRATDAEAKAEKELEARERGKQSPATLGRSSSRGKRRRKERDQWDMEAMIESGDWPD-----GESAWQEGGEEAQECGTTFRRHLLQV 291
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BLAST of mRNA_L-elsbetiae_contig12934.2326.1 vs. uniprot
Match: D7G4U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U5_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 8.960e-21
Identity = 53/124 (42.74%), Postives = 61/124 (49.19%), Query Frame = 3 
Query:   63 MFQPSEECSYLFRSWSPCWANECRRVTAREYGCALRQKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSARDEWDLEAAPGQGGWRGEGEGRGGAPREDEEEEWQECGTPFRHNLLQV 434
            MFQPS ECSYLFR W  CW +ECR VT REYGCALRQ+A                                  R  RD+WD+EA    G W       G +  ++  EE QECGT FR +LLQV
Sbjct:    1 MFQPSSECSYLFRFWDQCWEDECREVTKREYGCALRQRARDADAKAENELEARERGKQSTGTLGRSSSRGKRRRKERDQWDMEAMIESGDWPD-----GESAWQEGGEEAQECGTTFRRHLLQV 119
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12934.2326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JS08_9PHAE6.100e-3449.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4U5_ECTSI8.960e-2142.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12934contigL-elsbetiae_contig12934:2279..5178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size436
Cds size435
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12934.2326.1prot_L-elsbetiae_contig12934.2326.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12934 2279..5178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815475.6979258-CDS-L-elsbetiae_contig12934:2278..23781622815475.6979258-CDS-L-elsbetiae_contig12934:2278..2378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12934 2279..2378 +
1691682916.1272697-CDS-L-elsbetiae_contig12934:2278..23781691682916.1272697-CDS-L-elsbetiae_contig12934:2278..2378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12934 2279..2378 +
1622815475.7104385-CDS-L-elsbetiae_contig12934:4807..49291622815475.7104385-CDS-L-elsbetiae_contig12934:4807..4929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12934 4808..4929 +
1691682916.1365507-CDS-L-elsbetiae_contig12934:4807..49291691682916.1365507-CDS-L-elsbetiae_contig12934:4807..4929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12934 4808..4929 +
1622815475.7214882-CDS-L-elsbetiae_contig12934:4965..51781622815475.7214882-CDS-L-elsbetiae_contig12934:4965..5178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12934 4966..5178 +
1691682916.1447542-CDS-L-elsbetiae_contig12934:4965..51781691682916.1447542-CDS-L-elsbetiae_contig12934:4965..5178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12934 4966..5178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12934.2326.1

>prot_L-elsbetiae_contig12934.2326.1 ID=prot_L-elsbetiae_contig12934.2326.1|Name=mRNA_L-elsbetiae_contig12934.2326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
VGLPTCRCCAPLLGGKPTRAPCFSRRRSAATFSGPGARAGQTSVAGSPLV
STVAPSGKRQRRRQRRRWSREKKTEEEEEEMAARPLGRPRVRGEGALEMS
GIWRRHQGRAGGEAKERGGGGPRGRTKKRSGKSAARPFDTTCSR*
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mRNA from alignment at L-elsbetiae_contig12934:2279..5178+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12934.2326.1 ID=mRNA_L-elsbetiae_contig12934.2326.1|Name=mRNA_L-elsbetiae_contig12934.2326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2900bp|location=Sequence derived from alignment at L-elsbetiae_contig12934:2279..5178+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGGGCTCCCAACCTGTCGCTGCTGTGCGCCGCTCCTCGGCGGCAAGCC
TACGCGAGCACCATGTTTCAGCCGTCGGAGGAGTGCAGCTACCTTTTCAG
GTGCCTCTCGGCCGCACGGCAGGCATTCTGCCTTGATTCTCGCACTGCCG
TCGTCTACGGAAATCTGTGCAGCCTGATGAGGCAAAAACACGAGCGTTGT
TTAGTTGTTAACCGTGTGCACGCACCATCGCCGAGAGGAGTTTTACCTAT
TTTCCCCTGCAAGAGTCCGGATGCGAATCGTGCAGAAAGAAACAAACGAA
CCGGGGGGGGGCTCGATGGGGGTATATACATATAGCGTTTCGACTCCTCT
CTTTGGAGAGTTGTTTGTGGCAGTGGCATCGATCGCAGCCGTCATTTAGT
CGATCGGGGTTGTGTGCCTCCCTCGATCTGTGTGTGCACCTGCTTGTGTG
TCTCCCTCTCGCGTGCATGCGCGTTTGTTGCCGGCGGCCAACGCGGCTGC
TCTTCTGATAATTTCTACGGAAAAAATGCCGGCGGTCTATAGATGTAGAT
ACCCCCGGCTTGTGTACCAGAAAATGATCCAGGGGGACTGCTGTTAGAAG
TATGTAGAGACACTCCCCTCCCCCCTCCTTCTTCCCAGACTGGCTGTTAT
TTTGTTTTCATATTTTTCCTATTTAGTCAACAAAACCAAAATATCCGTGG
GGGGTCCGTGGTTACAAAACCCCCGCTGTCCCGGTGGCGGCGGTCGCCGC
TGGGCCTGGGCGCCAATAGATATCACTGCTGCGGCTTGCTTAGTTCTCCG
TAGACTGGTGTCTTTCACGCGTTGAAAACCGTCCCGATATGTCTGTCGAC
TCAGTACCCTCCTCTGTCCGTGCCCATCCAACGGCATGATGTGGTGGATC
CCGTAGTCGCAGGCTGCCTAACTTTTACCTATAAAAAGGTACACTTGAGA
AGTAATATCTCTACCCTGTACCTCTGCATGTCCGCAATCAGCCAACGCAC
GATGCGGCCGATCCCGTGGTCACAGGCTGCATAAATGTTACCTATATAAA
AAAGGCACACTTAGGAAAGTAGTCTCTCTACCCAGTGCCTCCACATATCC
GCAATCAGCCAGCGCACGATGCGGCCGATTCTGTAGTCACAGGCTGCGTA
ACTCTTACTTACAAAAATATACCCGGTGTCACGGGTGTTCTTACCTAAGC
ATACATGCAGCTTCGAATTATTTTACCTAAGCATACATGCATGCTTCGAG
GTATGTTACCAAAGCATGCCTGCGTGCTTCGAGGTATGTTACCTAAGCAT
ACCTGCATGCATACCTGCATGGTTCGAAGTATGTTACCTAAGCATACCTG
CATGCATACCTGCATGGTTCGAAGTATGTTACCTAAGCATGCATGCATGC
TTCGAGGTATGTTACCTAAGCATACATGCATGCTTCGAATTATGTTACCT
AAGCGTACCTGCATGCTTCGAGGTATGTTACCGAAGCGTGCCTGCATGCT
TCGAGGTATGTTACCTAAGCGTACCTGCATGCTTCGAGGTATGTTACCGA
AGCGTGCCTGCATGGCTCGAAGTATGTTACCTAAGCATACCTGCATGCTT
CGAGGTATGTTACCTAAGCATACATGCATGCTTCGAGGTATGTTACCTAA
GCATACCTGCATGCTTCGAGGTATGTTACCAAAGCATACCTGCATGCTTC
GAGGTATGTTACCAAAGCATACATGCATGCTTCGAGGTATGTTACCTAAG
CATACCTGCATGGCTCGAAGTATGTTACCTAAGCATACCTGTATGCATAC
CTGCATGGCTCGAAGTATGTTACCTAAGCATACATGCATGCTTCGAGATA
TGTTACCTAAGCATGCTTGCATGCATACCTGCATGGCTCGAAGTATGTTA
CCTAAGCATACCTGCATGCAACCTGCATGGTTCGAAGTATGTTACCTAAG
CGTGCATGCATGTTACCAATCATGCGTGAGTTCGCACCCCCCCTGGATCG
ACTTTCAAAGGTCGATTACTCCACTACAAGAAGGGTGTCAGTGCCGAAGA
GGGTGGCGTTGGAAACATCTCGTCGAGGGCTGTCCGAAAACGTGCCGTTT
GGTGCTCTGACGCCGTCTTCGCCACGGAGTTATTCGGACGTTGAGAGTAG
GTCCACTGGGGGTGCGAACCCACGCATGATTACGGTATACAGGTATACCG
TATACGACACAAGATAACACACCCCCTGTGTCGATGTTCAAGGCTCGGTT
ACTTCGCAACAAAGTATGATTCCAATACCAAACGACACGTTTTCGGACAG
CCAGCTCTTGATAAGATGTCTCCAACGCCACCCACCCCCATTTCGGCGCT
GGCCCTCTTCTTGCTGGGGAGGAATCATCGAGCTTTGAAAATATATCCAG
GGGGTGTGGTATCTTGTGTCACCTACGGTAACACGTACACACGCTAAAAT
AGGCTTTTGCGCGCAAGAACAACAGAGCACCAAAGCAAACACCGCGTGGG
GGGCGGACCGATTGCTCGAACGCGCACAGGTCCTGGAGCCCGTGCTGGGC
AAACGAGTGTCGCAGGGTCACCGCTCGTGAGTACGGTTGCGCCCTCCGGC
AAAAGGCAGCGGCGGCGGCAGCGGCGGCGGTGGTCGAGAGAGAAGAAAAC
CGTTCGGTGGCAGCGGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGATGGCAGCAAGGCCGCTAGGCCGCCCGCGAGTGCGAGGCGAAGGA
GCGCTCGAGATGAGTGGGATTTGGAGGCGGCACCAGGGCAGGGCGGGTGG
CGAGGCGAAGGAGAGGGGCGGGGGGGGGCCCCGCGGGAGGACGAAGAAGA
GGAGTGGCAAGAGTGCGGCACGCCCTTTCGACACAACCTGCTCCAGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12934:2279..5178+

>mRNA_L-elsbetiae_contig12934.2326.1 ID=mRNA_L-elsbetiae_contig12934.2326.1|Name=mRNA_L-elsbetiae_contig12934.2326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig12934:2279..5178+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGGGCTCCCAACCTGTCGCTGCTGTGCGCCGCTCCTCGGCGGCAAGCC
TACGCGAGCACCATGTTTCAGCCGTCGGAGGAGTGCAGCTACCTTTTCAG
GTGGGGCTCCCAACCTGTCGCTGCTGTGCGCCGCTCCTCGGCGGCAAGCC
TACGCGAGCACCATGTTTCAGCCGTCGGAGGAGTGCAGCTACCTTTTCAG
GTCCTGGAGCCCGTGCTGGGCAAACGAGTGTCGCAGGGTCACCGCTCGTG
AGTACGGTTGCGCCCTCCGGCAAAAGGCAGCGGCGGCGGCAGCGGCGGCG
GTGGTCGAGAGAGAAGAAAACCGTCCTGGAGCCCGTGCTGGGCAAACGAG
TGTCGCAGGGTCACCGCTCGTGAGTACGGTTGCGCCCTCCGGCAAAAGGC
AGCGGCGGCGGCAGCGGCGGCGGTGGTCGAGAGAGAAGAAAACCGAGGAG
GAGGAGGAGGAGATGGCAGCAAGGCCGCTAGGCCGCCCGCGAGTGCGAGG
CGAAGGAGCGCTCGAGATGAGTGGGATTTGGAGGCGGCACCAGGGCAGGG
CGGGTGGCGAGGCGAAGGAGAGGGGCGGGGGGGGGCCCCGCGGGAGGACG
AAGAAGAGGAGTGGCAAGAGTGCGGCACGCCCTTTCGACACAACCTGCTC
CAGGTAGGAGGAGGAGGAGGAGGAGATGGCAGCAAGGCCGCTAGGCCGCC
CGCGAGTGCGAGGCGAAGGAGCGCTCGAGATGAGTGGGATTTGGAGGCGG
CACCAGGGCAGGGCGGGTGGCGAGGCGAAGGAGAGGGGCGGGGGGGGGCC
CCGCGGGAGGACGAAGAAGAGGAGTGGCAAGAGTGCGGCACGCCCTTTCG
ACACAACCTGCTCCAGGTAG
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