mRNA_L-elsbetiae_contig12929.2323.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12929.2323.1
Unique NamemRNA_L-elsbetiae_contig12929.2323.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12929.2323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12929contigL-elsbetiae_contig12929:507..1398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size302
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815475.4533288-CDS-L-elsbetiae_contig12929:507..7001622815475.4533288-CDS-L-elsbetiae_contig12929:507..700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12929 508..700 -
1691682916.0011234-CDS-L-elsbetiae_contig12929:507..7001691682916.0011234-CDS-L-elsbetiae_contig12929:507..700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12929 508..700 -
1622815475.4678495-CDS-L-elsbetiae_contig12929:1291..13981622815475.4678495-CDS-L-elsbetiae_contig12929:1291..1398Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12929 1292..1398 -
1691682916.018925-CDS-L-elsbetiae_contig12929:1291..13981691682916.018925-CDS-L-elsbetiae_contig12929:1291..1398Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12929 1292..1398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12929.2323.1prot_L-elsbetiae_contig12929.2323.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12929 508..1398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12929.2323.1

>prot_L-elsbetiae_contig12929.2323.1 ID=prot_L-elsbetiae_contig12929.2323.1|Name=mRNA_L-elsbetiae_contig12929.2323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
LGDGSGYGSYNGNADGYDGGWGSGGNNVGRLHPLNECSNDYEGAATCGRA
SHPSPAPQRIRHRSKTEVWSSGASRQQQQQHRRRRNIPQVSGSGWARRRR
back to top

mRNA from alignment at L-elsbetiae_contig12929:507..1398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12929.2323.1 ID=mRNA_L-elsbetiae_contig12929.2323.1|Name=mRNA_L-elsbetiae_contig12929.2323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=892bp|location=Sequence derived from alignment at L-elsbetiae_contig12929:507..1398- (Laminarionema elsbetiae ELsaHSoW15)
TTGGGGGACGGTAGCGGTTACGGCAGTTACAATGGCAATGCCGACGGTTA
CGACGGCGGCTGGGGAAGCGGCGGCAACAATGTTGGGCGTCTGCACCCGT
TGAATGAGTGAGTATCAGGCGATTTTGCAACTCCACCAGTGTACAACATT
GTGTTGAAACTGGCCTCCGGAGGGCAAAACTATCAGAGAGGGAGCAACAG
CAACCGCTCTGGCTTCAGTTGCAATGGCACCGCATTTACTCGGTTCAAAG
CAAAACCAAGGCATCAAAAGTGCTTGCGAACATAGACTATTAACATGACT
GTAAACATGAAACTCCGTCCCAACACAAAGGGGGCACGAGGGTTCGAACC
CAGGACCCTCCGCTCCCCCTCCCCCCTTCCCTTTTTTTGTTGGGGCTTAC
ACCAATCGACTGGTGAGGGCATTTATTCACTCAGGGGAAATAACTTATTT
AACCTCCCTCAGGAGATGGTAACTTAATGTCCATAACTCAAGAGGGCACC
AGTGCAATCAGTGTACCCCCCCGCCGAATACGAGCTTGGGCCCTTCTCAC
GGCGAAAACGTCCTGGACTTGAGAACCCATGTCGTGCCCCCTTCCCTGTC
GTAAAAGGAGATCCTTGTGCACGTACTCCACGTCGTCTTGCCATGTGTAC
ATACTGTATATATTTTGCGTTTTGTTTTTGTCCTGCATGCGTATGCAGGT
GTTCCAACGACTACGAAGGCGCGGCGACATGCGGGCGGGCGTCACACCCC
TCCCCGGCTCCCCAACGAATCCGGCATCGTTCGAAAACGGAAGTTTGGTC
CTCCGGGGCGTCTCGACAACAGCAACAGCAGCACCGGCGGCGCAGGAATA
TTCCCCAGGTCAGCGGCTCAGGGTGGGCGAGGCGGCGGCGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12929:507..1398-

>mRNA_L-elsbetiae_contig12929.2323.1 ID=mRNA_L-elsbetiae_contig12929.2323.1|Name=mRNA_L-elsbetiae_contig12929.2323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig12929:507..1398- (Laminarionema elsbetiae ELsaHSoW15)
TTGGGGGACGGTAGCGGTTACGGCAGTTACAATGGCAATGCCGACGGTTA
CGACGGCGGCTGGGGAAGCGGCGGCAACAATGTTGGGCGTCTGCACCCGT
TGAATGATTGGGGGACGGTAGCGGTTACGGCAGTTACAATGGCAATGCCG
ACGGTTACGACGGCGGCTGGGGAAGCGGCGGCAACAATGTTGGGCGTCTG
CACCCGTTGAATGAGTGTTCCAACGACTACGAAGGCGCGGCGACATGCGG
GCGGGCGTCACACCCCTCCCCGGCTCCCCAACGAATCCGGCATCGTTCGA
AAACGGAAGTTTGGTCCTCCGGGGCGTCTCGACAACAGCAACAGCAGCAC
CGGCGGCGCAGGAATATTCCCCAGGTCAGCGGCTCAGGGTGGGCGAGGCG
GCGGCGGGTGTTCCAACGACTACGAAGGCGCGGCGACATGCGGGCGGGCG
TCACACCCCTCCCCGGCTCCCCAACGAATCCGGCATCGTTCGAAAACGGA
AGTTTGGTCCTCCGGGGCGTCTCGACAACAGCAACAGCAGCACCGGCGGC
GCAGGAATATTCCCCAGGTCAGCGGCTCAGGGTGGGCGAGGCGGCGGCGG
back to top