mRNA_L-elsbetiae_contig12924.2322.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12924.2322.1
Unique NamemRNA_L-elsbetiae_contig12924.2322.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12924.2322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12924contigL-elsbetiae_contig12924:2395..2837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815475.4082112-CDS-L-elsbetiae_contig12924:2394..24691622815475.4082112-CDS-L-elsbetiae_contig12924:2394..2469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12924 2395..2469 -
1691682915.9807-CDS-L-elsbetiae_contig12924:2394..24691691682915.9807-CDS-L-elsbetiae_contig12924:2394..2469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12924 2395..2469 -
1622815475.4194179-CDS-L-elsbetiae_contig12924:2636..28371622815475.4194179-CDS-L-elsbetiae_contig12924:2636..2837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12924 2637..2837 -
1691682915.991002-CDS-L-elsbetiae_contig12924:2636..28371691682915.991002-CDS-L-elsbetiae_contig12924:2636..2837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12924 2637..2837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12924.2322.1prot_L-elsbetiae_contig12924.2322.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12924 2395..2837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12924.2322.1

>prot_L-elsbetiae_contig12924.2322.1 ID=prot_L-elsbetiae_contig12924.2322.1|Name=mRNA_L-elsbetiae_contig12924.2322.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MQLPPPCQAWKRQKQREAELHNSRKQAGFETVMNGAAPAKPPGPEGPPPN
RDDGPGPQRIPPGAKNKGGIWDNIDAAKAGDPRPAVTNPYSK
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mRNA from alignment at L-elsbetiae_contig12924:2395..2837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12924.2322.1 ID=mRNA_L-elsbetiae_contig12924.2322.1|Name=mRNA_L-elsbetiae_contig12924.2322.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=443bp|location=Sequence derived from alignment at L-elsbetiae_contig12924:2395..2837- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAATTACCACCTCCCTGCCAGGCATGGAAACGTCAGAAGCAGCGCGA
GGCAGAGCTGCACAACAGCAGAAAACAGGCCGGCTTCGAAACGGTGATGA
ATGGGGCAGCACCGGCGAAACCTCCAGGACCGGAGGGCCCGCCTCCTAAC
CGCGACGATGGCCCCGGACCGCAGAGAATACCTCCGGGTGCAAAAAACAA
GGTGACGTGCGGCTAATATCGCGCGCTGTTTGAGGTTACCAACGATACTC
CGCGTACTAGTCTCCCCGATCAAGGCCGACTCACCCACTTCCAGCTATCT
GCAATCGGACAGCGTTCCCTGTGTAACACTCCCTGCTTCCTGCCTGCCTG
CCTGCCTGCTTCTTTCAGGGAGGAATATGGGACAACATAGATGCCGCCAA
AGCGGGCGACCCGCGACCTGCAGTCACCAATCCGTATTCCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12924:2395..2837-

>mRNA_L-elsbetiae_contig12924.2322.1 ID=mRNA_L-elsbetiae_contig12924.2322.1|Name=mRNA_L-elsbetiae_contig12924.2322.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig12924:2395..2837- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAATTACCACCTCCCTGCCAGGCATGGAAACGTCAGAAGCAGCGCGA
GGCAGAGCTGCACAACAGCAGAAAACAGGCCGGCTTCGAAACGGTGATGA
ATGGGGCAGCACCGGCGAAACCTCCAGGACCGGAGGGCCCGCCTCCTAAC
CGCGACGATGGCCCCGGACCGCAGAGAATACCTCCGGGTGCAAAAAACAA
GATGCAATTACCACCTCCCTGCCAGGCATGGAAACGTCAGAAGCAGCGCG
AGGCAGAGCTGCACAACAGCAGAAAACAGGCCGGCTTCGAAACGGTGATG
AATGGGGCAGCACCGGCGAAACCTCCAGGACCGGAGGGCCCGCCTCCTAA
CCGCGACGATGGCCCCGGACCGCAGAGAATACCTCCGGGTGCAAAAAACA
AGGGAGGAATATGGGACAACATAGATGCCGCCAAAGCGGGCGACCCGCGA
CCTGCAGTCACCAATCCGTATTCCAAGGGAGGAATATGGGACAACATAGA
TGCCGCCAAAGCGGGCGACCCGCGACCTGCAGTCACCAATCCGTATTCCA
AG
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