mRNA_L-elsbetiae_contig12922.2321.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12922.2321.1
Unique NamemRNA_L-elsbetiae_contig12922.2321.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12922.2321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12922contigL-elsbetiae_contig12922:4440..5129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size690
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12922.2321.1prot_L-elsbetiae_contig12922.2321.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12922 4619..4972 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815475.2160785-UTR-L-elsbetiae_contig12922:4439..46181622815475.2160785-UTR-L-elsbetiae_contig12922:4439..4618Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12922 4440..4618 +
1691682915.8695362-UTR-L-elsbetiae_contig12922:4439..46181691682915.8695362-UTR-L-elsbetiae_contig12922:4439..4618Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12922 4440..4618 +
1622815475.2465138-UTR-L-elsbetiae_contig12922:4972..51291622815475.2465138-UTR-L-elsbetiae_contig12922:4972..5129Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12922 4973..5129 +
1691682915.8985531-UTR-L-elsbetiae_contig12922:4972..51291691682915.8985531-UTR-L-elsbetiae_contig12922:4972..5129Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12922 4973..5129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815475.2318444-CDS-L-elsbetiae_contig12922:4618..49721622815475.2318444-CDS-L-elsbetiae_contig12922:4618..4972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12922 4619..4972 +
1691682915.8825946-CDS-L-elsbetiae_contig12922:4618..49721691682915.8825946-CDS-L-elsbetiae_contig12922:4618..4972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12922 4619..4972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12922.2321.1

>prot_L-elsbetiae_contig12922.2321.1 ID=prot_L-elsbetiae_contig12922.2321.1|Name=mRNA_L-elsbetiae_contig12922.2321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MCDRRTSVRTGVSLLFVRTGVSLLFVPLCQQHRETKEGGVMSSLGQFDTR
GNSAASPLTGVTFTISDSTILISECFAMNQWAIHPPLARRETHGPRPSAP
SLSHPASCPSPKRKKPT*
back to top

mRNA from alignment at L-elsbetiae_contig12922:4440..5129+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12922.2321.1 ID=mRNA_L-elsbetiae_contig12922.2321.1|Name=mRNA_L-elsbetiae_contig12922.2321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig12922:4440..5129+ (Laminarionema elsbetiae ELsaHSoW15)
ACCTCGATGCGCACCAGTAGATGCTCCCTGCCAAGTCTCATCCTCAATCT
CAGAGGTTTGGCTCGGATACAGTCGTCAGTGACATATTTCCGTCATTACC
GCGTACAACCCGATCAACTCATATTTTCGGTTTTTGATTTTTTGACACAC
ATCCCACCGGGCCGACACACGACAACAGTATGTGTGACAGGAGAACAAGC
GTACGCACAGGAGTATCGTTGCTGTTTGTACGCACAGGAGTATCGTTGCT
GTTTGTACCCTTGTGTCAGCAGCACAGAGAGACCAAGGAGGGTGGGGTCA
TGTCGTCACTCGGGCAGTTCGACACACGCGGCAACAGCGCAGCTTCACCG
CTGACCGGCGTTACATTCACCATCTCCGACAGCACGATATTAATTTCCGA
ATGTTTTGCCATGAATCAATGGGCAATTCACCCGCCGCTTGCTCGTCGTG
AAACTCATGGTCCACGACCCTCTGCCCCATCCCTGTCACACCCTGCATCA
TGCCCCTCTCCGAAGCGCAAAAAGCCTACATGACCAAGCATTATTAGCAC
TACATACATACATACGCACGTGATTCGGCACGCGGTCTGGTTGTAGTTTG
GCGAAGCATTTCTTTTGATTGTTTTGTTGGCCGTTGATTGGTTTGTTCGC
AATTTTTTCTTGGCAAGTGAGTAAGAAGAGTGCTTGCGCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12922:4440..5129+

>mRNA_L-elsbetiae_contig12922.2321.1 ID=mRNA_L-elsbetiae_contig12922.2321.1|Name=mRNA_L-elsbetiae_contig12922.2321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig12922:4440..5129+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGACAGGAGAACAAGCGTACGCACAGGAGTATCGTTGCTGTTTGT
ACGCACAGGAGTATCGTTGCTGTTTGTACCCTTGTGTCAGCAGCACAGAG
AGACCAAGGAGGGTGGGGTCATGTCGTCACTCGGGCAGTTCGACACACGC
GGCAACAGCGCAGCTTCACCGCTGACCGGCGTTACATTCACCATCTCCGA
CAGCACGATATTAATTTCCGAATGTTTTGCCATGAATCAATGGGCAATTC
ACCCGCCGCTTGCTCGTCGTGAAACTCATGGTCCACGACCCTCTGCCCCA
TCCCTGTCACACCCTGCATCATGCCCCTCTCCGAAGCGCAAAAAGCCTAC
ATGAATGTGTGACAGGAGAACAAGCGTACGCACAGGAGTATCGTTGCTGT
TTGTACGCACAGGAGTATCGTTGCTGTTTGTACCCTTGTGTCAGCAGCAC
AGAGAGACCAAGGAGGGTGGGGTCATGTCGTCACTCGGGCAGTTCGACAC
ACGCGGCAACAGCGCAGCTTCACCGCTGACCGGCGTTACATTCACCATCT
CCGACAGCACGATATTAATTTCCGAATGTTTTGCCATGAATCAATGGGCA
ATTCACCCGCCGCTTGCTCGTCGTGAAACTCATGGTCCACGACCCTCTGC
CCCATCCCTGTCACACCCTGCATCATGCCCCTCTCCGAAGCGCAAAAAGC
CTACATGA
back to top