mRNA_L-elsbetiae_contig12914.2317.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12914.2317.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI) HSP 1 Score: 194 bits (492), Expect = 4.970e-57 Identity = 96/107 (89.72%), Postives = 99/107 (92.52%), Query Frame = 1 Query: 1 ITEEKLRAMRSGCTIDGVRYRGMFVRVEGGGGKGREARNAWLTIECNEGKNRQIRKICKYLCLTVNRLNRIRYGPFSLGKFRAGGVAGVEIPKAFLRRLEEGTAGGS 321 ITEEKLRAMRSGCTIDGVRY+GMFVRVEGGGGKGRE RNAWLTIEC EGKNRQIRKICKYLCLTVNRL R RYGPFSLGK RAGGVA VEIPKAF+RRLE+G GGS Sbjct: 274 ITEEKLRAMRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRLEDG--GGS 378
BLAST of mRNA_L-elsbetiae_contig12914.2317.1 vs. uniprot
Match: A0A6H5J790_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J790_9PHAE) HSP 1 Score: 161 bits (407), Expect = 1.770e-47 Identity = 83/113 (73.45%), Postives = 87/113 (76.99%), Query Frame = 1 Query: 25 MRSGCTIDGVRYRGMFVRVEGGGGKGREARNAWLTIECNEGKNRQIRKICKYLCLTVNRLNRIRYGPFSLGKFRAGGVAGVEIPKAFLRRLEEGTAGGSSRESGGGGVSGRRM 363 MRSGCTIDGVRY+GMFVRVEGGGGKGRE RNAWLTIEC EGK ICKYLCLTVNRL R YGPFSLGK RAGGVA VEIPKAF+RRLE+G G SGRR+ Sbjct: 1 MRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGK------ICKYLCLTVNRLARTGYGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPGGAXXXXXGTSGRRL 107
BLAST of mRNA_L-elsbetiae_contig12914.2317.1 vs. uniprot
Match: A0A3M0C2Q2_9PROT (Pseudouridine synthase n=2 Tax=Eilatimonas milleporae TaxID=911205 RepID=A0A3M0C2Q2_9PROT) HSP 1 Score: 84.0 bits (206), Expect = 1.940e-16 Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 1 Query: 1 ITEEKLRAMRSGCTIDGVRYRGMFVRVEGGGGKGREARNAWLTIECNEGKNRQIRKICKYLCLTVNRLNRIRYGPFSLGKFRAGGVAGVEIPKAFLR 291 +T+++L ++ G TIDG Y + +E +G NAWLT+ EGKNR++R++ ++L L+VNRL R+ YGPFSLG AGG A ++P+ LR Sbjct: 164 VTDQQLAGLKDGITIDGTHYGAIDAALETAQKQG--GANAWLTVAIREGKNREVRRVMEHLGLSVNRLIRVDYGPFSLGSLPAGGTA--QVPEKQLR 256
BLAST of mRNA_L-elsbetiae_contig12914.2317.1 vs. uniprot
Match: A0A2W5FQD0_9PROT (Pseudouridine synthase n=1 Tax=Micavibrio aeruginosavorus TaxID=349221 RepID=A0A2W5FQD0_9PROT) HSP 1 Score: 82.8 bits (203), Expect = 2.100e-16 Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 1 Query: 1 ITEEKLRAMRSGCTIDGVRYRGMFVRVEGGGGKGREARNAWLTIECNEGKNRQIRKICKYLCLTVNRLNRIRYGPFSLGKFRAGGVAGVEIPKAFLRR 294 I +++L +R G TIDG+RY M VR+E K + + N WL + EGKNR+IRK+ + + LTVNRL R+ YGPF LGK G + +EI +R+ Sbjct: 153 IFQDRLERVRRGITIDGIRYGPMEVRLE----KEQTSANTWLIVSLTEGKNREIRKVLEAVGLTVNRLIRLSYGPFKLGKLGRGEI--IEIRPDMVRK 244
BLAST of mRNA_L-elsbetiae_contig12914.2317.1 vs. uniprot
Match: A0A431VFR7_9PROT (Pseudouridine synthase n=1 Tax=Azospirillum griseum TaxID=2496639 RepID=A0A431VFR7_9PROT) HSP 1 Score: 84.3 bits (207), Expect = 3.330e-16 Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 1 Query: 1 ITEEKLRAMRSGCTIDGVRY---RGMFVRVEGGGGKGREARNAWLTIECNEGKNRQIRKICKYLCLTVNRLNRIRYGPFSLGKFRAGGVAGVEIPKAFLR 291 + E KL A+ G TIDGV+Y + R++G RNAWLT+ EGKNR+IRK+ + L L VNRL R+ YGPF LGK G V E+PK +R Sbjct: 157 VEEIKLAALAKGPTIDGVKYGPIEAVLDRIQG--------RNAWLTVSLKEGKNREIRKVMESLGLVVNRLIRVAYGPFQLGKLEDGAVE--EVPKRIVR 246
BLAST of mRNA_L-elsbetiae_contig12914.2317.1 vs. uniprot
Match: A0A433JEJ1_9PROT (Pseudouridine synthase n=1 Tax=Azospirillum doebereinerae TaxID=92933 RepID=A0A433JEJ1_9PROT) HSP 1 Score: 84.0 bits (206), Expect = 4.420e-16 Identity = 47/100 (47.00%), Postives = 61/100 (61.00%), Query Frame = 1 Query: 1 ITEEKLRAMRSGCTIDGVRY---RGMFVRVEGGGGKGREARNAWLTIECNEGKNRQIRKICKYLCLTVNRLNRIRYGPFSLGKFRAGGVAGVEIPKAFLR 291 + E +L A+ G TI+GV+Y + RV+G RNAWLT+ EGKNR+IRK+ + L L VNRL R+ YGPF LGK GGV E+PK +R Sbjct: 157 VDEIQLAALAKGPTIEGVKYGPIEALLDRVQG--------RNAWLTVSLKEGKNREIRKVMESLGLQVNRLIRVAYGPFQLGKLEEGGVE--EVPKRVVR 246
BLAST of mRNA_L-elsbetiae_contig12914.2317.1 vs. uniprot
Match: A0A2U1VBY2_9PROT (Pseudouridine synthase n=2 Tax=Azospirillum sp. TSO35-2 TaxID=716796 RepID=A0A2U1VBY2_9PROT) HSP 1 Score: 83.6 bits (205), Expect = 6.020e-16 Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 1 Query: 1 ITEEKLRAMRSGCTIDGVRY---RGMFVRVEGGGGKGREARNAWLTIECNEGKNRQIRKICKYLCLTVNRLNRIRYGPFSLGKFRAGGVAGVEIPKAFLR 291 + E +L A+R G TIDGV+Y + R++G RNAWLT+ EGKNR+IRK+ + L VNRL R+ YGPF LGK G V E+PK +R Sbjct: 138 VDEVQLAALRKGPTIDGVKYGPIEAVLDRIQG--------RNAWLTVSLKEGKNREIRKVMEAFGLQVNRLIRVAYGPFQLGKLEEGAVE--EVPKRVVR 227
BLAST of mRNA_L-elsbetiae_contig12914.2317.1 vs. uniprot
Match: A0A418W4N9_9PROT (Pseudouridine synthase n=1 Tax=Azospirillum cavernae TaxID=2320860 RepID=A0A418W4N9_9PROT) HSP 1 Score: 83.6 bits (205), Expect = 6.600e-16 Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 1 Query: 1 ITEEKLRAMRSGCTIDGVRY---RGMFVRVEGGGGKGREARNAWLTIECNEGKNRQIRKICKYLCLTVNRLNRIRYGPFSLGKFRAGGVAGVEIPKAFLR 291 + E KL A+ G TIDGV+Y + R++G RNAWLT+ EGKNR+IRK+ + + L VNRL R+ YGPF LGK GV E+PK +R Sbjct: 157 VDEIKLAALAKGPTIDGVKYGPIEAVLDRIQG--------RNAWLTVALKEGKNREIRKVMEAMGLVVNRLIRVAYGPFQLGKLEESGVE--EVPKRIVR 246
BLAST of mRNA_L-elsbetiae_contig12914.2317.1 vs. uniprot
Match: UPI001AE4FA8B (pseudouridine synthase n=1 Tax=Azospirillum soli TaxID=1304799 RepID=UPI001AE4FA8B) HSP 1 Score: 82.8 bits (203), Expect = 8.410e-16 Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 1 Query: 1 ITEEKLRAMRSGCTIDGVRY---RGMFVRVEGGGGKGREARNAWLTIECNEGKNRQIRKICKYLCLTVNRLNRIRYGPFSLGKFRAGGVAGVEIPKAFLR 291 + E+KL + G TIDG++Y + R++G RNAWLT+ EGKNR+IRK+ + L L VNRL R+ YGPF LGK G V E+PK +R Sbjct: 157 VDEKKLADLEKGPTIDGIKYGPIEAVLDRIQG--------RNAWLTVSLKEGKNREIRKVMEGLGLQVNRLIRVAYGPFQLGKLEEGAVE--EVPKRVVR 246
BLAST of mRNA_L-elsbetiae_contig12914.2317.1 vs. uniprot
Match: D3NW40_AZOS1 (Pseudouridine synthase n=3 Tax=unclassified Azospirillum TaxID=2630922 RepID=D3NW40_AZOS1) HSP 1 Score: 82.8 bits (203), Expect = 8.660e-16 Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 1 Query: 1 ITEEKLRAMRSGCTIDGVRY---RGMFVRVEGGGGKGREARNAWLTIECNEGKNRQIRKICKYLCLTVNRLNRIRYGPFSLGKFRAGGVAGVEIPKAFLR 291 + E++L A+ G TI+GV+Y + R++G RNAWLT+ EGKNR+IRK+ + L L VNRL R+ YGPF LGK G V E+PK +R Sbjct: 161 VDEKQLAALEKGPTIEGVKYGPIEAVLDRIQG--------RNAWLTVSLKEGKNREIRKVMESLGLQVNRLIRVAYGPFQLGKLEEGAVE--EVPKRVVR 250 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12914.2317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12914.2317.1 >prot_L-elsbetiae_contig12914.2317.1 ID=prot_L-elsbetiae_contig12914.2317.1|Name=mRNA_L-elsbetiae_contig12914.2317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp MRSGCTIDGVRYRGMFVRVEGGGGKGREARNAWLTIECNEGKNRQIRKICback to top mRNA from alignment at L-elsbetiae_contig12914:320..4169- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12914.2317.1 ID=mRNA_L-elsbetiae_contig12914.2317.1|Name=mRNA_L-elsbetiae_contig12914.2317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3850bp|location=Sequence derived from alignment at L-elsbetiae_contig12914:320..4169- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12914:320..4169- >mRNA_L-elsbetiae_contig12914.2317.1 ID=mRNA_L-elsbetiae_contig12914.2317.1|Name=mRNA_L-elsbetiae_contig12914.2317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig12914:320..4169- (Laminarionema elsbetiae ELsaHSoW15)back to top |