mRNA_L-elsbetiae_contig12911.2315.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12911.2315.1
Unique NamemRNA_L-elsbetiae_contig12911.2315.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig12911.2315.1 vs. uniprot
Match: D7G411_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G411_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 6.400e-24
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 RTEAVFQTPDPVFERTWVFVAPSYDACVAIDLVDASTDRLAGRFETTVMALLQ 159
            RTEAVFQTPDPVFERTWVFVAPSYD+CV IDLVDASTDR AGRFETTV+ LLQ
Sbjct: 1186 RTEAVFQTPDPVFERTWVFVAPSYDSCVTIDLVDASTDRPAGRFETTVIGLLQ 1238
[Close]
BLAST of mRNA_L-elsbetiae_contig12911.2315.1 vs. uniprot
Match: A0A6H5L011_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L011_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 6.830e-22
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 RTEAVFQTPDPVFERTWVFVAPSYDACVAIDLVDASTDRLAGRFETTVMALLQ 159
            RTEAVFQTPDPVFERTWVF APSYD+ V IDLVDASTDR AGRFETTV+ LLQ
Sbjct: 1201 RTEAVFQTPDPVFERTWVFAAPSYDSFVTIDLVDASTDRPAGRFETTVIGLLQ 1253
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12911.2315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G411_ECTSI6.400e-2490.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L011_9PHAE6.830e-2286.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12911contigL-elsbetiae_contig12911:989..1153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue6.7e-20
Seed eggNOG ortholog2880.D7G411
KEGG koko:K10360,ko:K19839,ko:K20644
KEGG Pathwayko04011,map04011
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001709,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0008047,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0030029,GO:0030036,GO:0030154,GO:0030234,GO:0030695,GO:0030865,GO:0030866,GO:0032502,GO:0032970,GO:0033036,GO:0043085,GO:0043087,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045167,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051179,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0098772,GO:0099568
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG1453@1,KOG1453@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04812
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815474.6844628-CDS-L-elsbetiae_contig12911:988..11531622815474.6844628-CDS-L-elsbetiae_contig12911:988..1153Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12911 989..1153 -
1691682915.5885568-CDS-L-elsbetiae_contig12911:988..11531691682915.5885568-CDS-L-elsbetiae_contig12911:988..1153Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12911 989..1153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12911.2315.1prot_L-elsbetiae_contig12911.2315.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12911 989..1153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12911.2315.1

>prot_L-elsbetiae_contig12911.2315.1 ID=prot_L-elsbetiae_contig12911.2315.1|Name=mRNA_L-elsbetiae_contig12911.2315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
RTEAVFQTPDPVFERTWVFVAPSYDACVAIDLVDASTDRLAGRFETTVMA
LLQV*
back to top

mRNA from alignment at L-elsbetiae_contig12911:989..1153-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12911.2315.1 ID=mRNA_L-elsbetiae_contig12911.2315.1|Name=mRNA_L-elsbetiae_contig12911.2315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=165bp|location=Sequence derived from alignment at L-elsbetiae_contig12911:989..1153- (Laminarionema elsbetiae ELsaHSoW15)
CGGACGGAAGCGGTCTTTCAGACTCCCGACCCCGTCTTTGAGCGCACGTG
GGTGTTCGTGGCGCCGTCGTACGACGCTTGTGTGGCGATCGACCTCGTGG
ACGCCTCTACCGACCGCCTGGCGGGGAGGTTCGAGACCACCGTCATGGCA
CTCTTGCAGGTATGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12911:989..1153-

>mRNA_L-elsbetiae_contig12911.2315.1 ID=mRNA_L-elsbetiae_contig12911.2315.1|Name=mRNA_L-elsbetiae_contig12911.2315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig12911:989..1153- (Laminarionema elsbetiae ELsaHSoW15)
CGGACGGAAGCGGTCTTTCAGACTCCCGACCCCGTCTTTGAGCGCACGTG
GGTGTTCGTGGCGCCGTCGTACGACGCTTGTGTGGCGATCGACCTCGTGG
ACGCCTCTACCGACCGCCTGGCGGGGAGGTTCGAGACCACCGTCATGGCA
CTCTTGCAGGTATGACGGACGGAAGCGGTCTTTCAGACTCCCGACCCCGT
CTTTGAGCGCACGTGGGTGTTCGTGGCGCCGTCGTACGACGCTTGTGTGG
CGATCGACCTCGTGGACGCCTCTACCGACCGCCTGGCGGGGAGGTTCGAG
ACCACCGTCATGGCACTCTTGCAGGTATGA
back to top