mRNA_L-elsbetiae_contig12904.2311.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12904.2311.1
Unique NamemRNA_L-elsbetiae_contig12904.2311.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12904.2311.1 vs. uniprot
Match: A0A7S2Y5V5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5V5_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 8.760e-5
Identity = 20/25 (80.00%), Postives = 21/25 (84.00%), Query Frame = -1 
Query:   67 VSSPHLARSYHHLFPVPQFGETTVH 141
            V SPHLARS+HHLFPVPQF E  VH
Sbjct:  173 VLSPHLARSFHHLFPVPQFAEVVVH 197
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BLAST of mRNA_L-elsbetiae_contig12904.2311.1 vs. uniprot
Match: A0A1Y1XF84_9FUNG (General transcription and DNA repair factor IIH n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XF84_9FUNG)

HSP 1 Score: 48.1 bits (113), Expect = 9.590e-5
Identity = 22/32 (68.75%), Postives = 23/32 (71.88%), Query Frame = -1 
Query:   46 VSSPHLARSYHHLFPVPQFGETTVHPVFLLLP 141
            VSSPHLARSYHHLFPVP + E   H V L  P
Sbjct:  317 VSSPHLARSYHHLFPVPNYKEVPRHKVTLSSP 348
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12904.2311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2Y5V5_9STRA8.760e-580.00Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A1Y1XF84_9FUNG9.590e-568.75General transcription and DNA repair factor IIH n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12904contigL-elsbetiae_contig12904:379..3089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size199
Cds size135
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12904.2311.1prot_L-elsbetiae_contig12904.2311.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12904 379..3026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815474.3423746-CDS-L-elsbetiae_contig12904:378..4521622815474.3423746-CDS-L-elsbetiae_contig12904:378..452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12904 379..452 +
1691682915.4058256-CDS-L-elsbetiae_contig12904:378..4521691682915.4058256-CDS-L-elsbetiae_contig12904:378..452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12904 379..452 +
1622815474.3537772-CDS-L-elsbetiae_contig12904:2965..30261622815474.3537772-CDS-L-elsbetiae_contig12904:2965..3026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12904 2966..3026 +
1691682915.4186997-CDS-L-elsbetiae_contig12904:2965..30261691682915.4186997-CDS-L-elsbetiae_contig12904:2965..3026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12904 2966..3026 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815474.3648138-UTR-L-elsbetiae_contig12904:3026..30891622815474.3648138-UTR-L-elsbetiae_contig12904:3026..3089Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12904 3027..3089 +
1691682915.426624-UTR-L-elsbetiae_contig12904:3026..30891691682915.426624-UTR-L-elsbetiae_contig12904:3026..3089Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12904 3027..3089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12904.2311.1

>prot_L-elsbetiae_contig12904.2311.1 ID=prot_L-elsbetiae_contig12904.2311.1|Name=mRNA_L-elsbetiae_contig12904.2311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=45bp
YTTGKLSREGNRSKVRQKKKNRVYSCFAELRHREEMVVRPSEMG*
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mRNA from alignment at L-elsbetiae_contig12904:379..3089+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12904.2311.1 ID=mRNA_L-elsbetiae_contig12904.2311.1|Name=mRNA_L-elsbetiae_contig12904.2311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2711bp|location=Sequence derived from alignment at L-elsbetiae_contig12904:379..3089+ (Laminarionema elsbetiae ELsaHSoW15)
TACACCACTGGAAAGCTTTCCCGCGAGGGAAACCGCAGTAAGGTGCGGCA
GAAGAAGAAAAACAGGGTGTACAGGTCAGTCATACGGATCGCCGGTAGAG
CAGCAGTAGACACGAGCTTGGCAGGCATATCTAGATGTTCACCACTGCTG
AGGTGAAAGTGTATGTCAACACACGCTAAACTCTCTCCGTTTCTTTACAA
TCTCTCTCACGCGCACACACACCTTTGCCGCAGCTGTCGGCCGACTATTT
GCAGCGGCAGCAGGTGCATAGTTGCCCGTGCGCTGTGGAAAGCTGCCCTA
TTGTCTATTTTCGGCTCCGATTTGGGTAGGGGTCATCTGGGTAAATAAAA
TTATTTCGCGCGAAGCGCGAATCTTATATATGAGAAGGCGTTATGTTTTA
GGGCTGTGTTTTATGCGTTGAGGCGGCGAGCTTCTTGGCGCTGTAATTCT
TCGAGACCGTACTCGATTTCAAAACGGATTTTTGCATGGCGCTCCCTTAA
ATCTTTACGACTCTTTTCAGCCTCTCGGTCGGACGTAATTCCAAAATATG
TAGTACTTTTCAACAGGGAATTGTGAGGTAGTTTCCGCACATTTACGTAC
TGTGGGTGGTATGTTTATGTATGTAACCTGGACTATACTATTTAGCCGAA
AGTGGATGTATTACCCTAATCTACGCCATCGTAGCTCCGGGATACCATCA
TACCCCCCCCCATCACTTTCTCGCTAAGAGCATAATATCTCTGTCGTAGC
CCCGGGGAAGCATGTTTTTGTGGCAAAAATAAAATCCTCCCCTGATAACT
AGATACCCATTTAGATAAAGTTTAGCCCCGCGCGTTAGAAAAGTGTTTTC
AGGAAAAAAAACATTCTCCCCCGGGGCTATTTATTGTATGGCGGAGAATT
TCCCCCACTTGATACGGTAATTTTACCATCAAGCAGCGTTCATTTGGGAT
GGAGTTCATAGCCTGTTGTCGGCAGAACGGGTGCGTTACTTCCCCCCTTT
TACTGATGCTGCTCGTAAACTTTGTGCATCTTGACGTGTGTGTGTAAGTT
TTTATGGTTGTGGGTGGATGTGTGGGTGTTCTTCTCCCCGGGGTAAATAT
CTCCCAGGTTGCGCCAACGAAAAAAGAGAGAATATTCCCCCCCAATAATT
CAAATTTCAAGCGGGGGTGGGAACCCGCCCACCCCGTGCTATGGCCCCCG
TACTTCCTGCAGCCAGCTACGCATAACATCACGAATTTCCAACAACAAAC
TCAACTATGTGGTACTTCAGGTTCTACAAAGAGCGTACGCCGTGAGGTGT
GAATATTCTGACGAGGATTGGATCTACATGGACTATCTAAGATATAGGGT
TTTGTTTTTTTTCCCGCCCATCATTGGCATACGAAGTATTTGTCGTCTGC
CCCACTGGCCCCCATCTTCCACTACGACTAGCTAGACGACCCAACCAGGG
TCACATGTGTTGATGTATGTATGTGCGTTACTGCATGACAGCAGTTGGAG
CAGCGAGGGGCGAGGAGTTCTCACTTATCCTAATGGATCATTAAAATAGA
GCTGCAACAACCAACCAATAAACTGGTTGAATCTTGTTTGTTGGGAGTAA
ACAAAAAATAAGAACGATGGACCGGGTATAAAAAAAAAATGCAAATCTTG
CTCATCAAGCAACTTTCAGCGCACTCCATCATATCTACGTAGCTTAGAAG
CTGTGTGGTTGATCAGGATATTATCATGTAGATACAACTTAAGGTTGGTC
AACAACACCCGAGATTGAAGATGGCAGCCCTCTGCTTCGACTCTTCCCAG
AGAGGGCAGGCAGCCCAAACACACCCACCGCCGCAGCCGTGGACATAACT
CTCGACTCCACAGCCGTGATATGGACGATACTTACTCAAAGGTCCAATCA
ACGTCGACAGGAGCCGTGACTGGTGAGTAGACGCTGAAAGAGAAGCAACG
GCTAAGGACTCATCCTTCCGTAGCCTATGCTAGTATGCATGTATCTCCGA
CAAAGAGAATCGCACGATATTCGTTGCGTCAGCTGCGGCGAAGCTGGAGG
AGGAGCGGATCGCACGATAAAAATGTAGTCAAACACCGTGTGTGGAGCGG
ACTTGTGCTTTCATCACGTCCATCCAACAATTATACTAAAACGCATTTAA
AAAAGTACATTGTCTTTTGGCGGACACTCTAAATCTGTCACGAGCGAAAC
TATCGATGATCGCAACCAGCTAAAGCAACAGCAAGAAGAAAATGAGCAAC
ACTGTTGTCGACACCACCACCACCACCACAAGAACAGCACCAGAAGCTGG
GCCCATTCAGCAGCACCCCGGGCAGTTGTGCAACGAGTCGTGCACGTACA
TGTCGCAATCCAGGCAGAACGCGCTCTTGCACTCGGGGCACTGGTACCTC
GGCAGCTCCGCTAAGTCTCGCAGACACCCCGCGCAGGCGGAGGAAGAGGA
AGAAGACCCCACCCCGTCTCCTCCTCGTGTCCCGCCCACGACCCCTAATC
CCACAGCAGAACCGTTTCCGGAACCGTTCTCGGCTGTTGAGGGTGGTGTT
GTTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGCAGTTGTTTCGCCGAA
CTGAGGCACCGGGAAGAGATGGTGGTAAGACCTAGCGAGATGGGGTGATG
ACACCTGGGAGGAGGAGAGGCGAGGCGAGGATAAATAGATGCGTTTGGAA
TCAAGAGGAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12904:379..3089+

>mRNA_L-elsbetiae_contig12904.2311.1 ID=mRNA_L-elsbetiae_contig12904.2311.1|Name=mRNA_L-elsbetiae_contig12904.2311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=270bp|location=Sequence derived from alignment at L-elsbetiae_contig12904:379..3089+ (Laminarionema elsbetiae ELsaHSoW15)
TACACCACTGGAAAGCTTTCCCGCGAGGGAAACCGCAGTAAGGTGCGGCA
GAAGAAGAAAAACAGGGTGTACAGTACACCACTGGAAAGCTTTCCCGCGA
GGGAAACCGCAGTAAGGTGCGGCAGAAGAAGAAAAACAGGGTGTACAGTT
GTTTCGCCGAACTGAGGCACCGGGAAGAGATGGTGGTAAGACCTAGCGAG
ATGGGGTGATTGTTTCGCCGAACTGAGGCACCGGGAAGAGATGGTGGTAA
GACCTAGCGAGATGGGGTGA
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