mRNA_L-elsbetiae_contig129.2306.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig129.2306.1 vs. uniprot
Match: D7FMR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR0_ECTSI) HSP 1 Score: 550 bits (1418), Expect = 2.190e-191 Identity = 324/411 (78.83%), Postives = 343/411 (83.45%), Query Frame = 2 Query: 71 MDPFDPDAIIHVLSRCEACQLGQVGTRVCVEKGHHATVASVKRSARGSNFVDPYTEEEVDARYRLMLKPGESLRIIHTNAVIDGAVKFAPGTVFQQPPNTKSQTLLGCFKNGVPLHDFVLGGA-AGAXXXXXXXXXXXXXXXDARQAKRKALAAGLGPGAAAKKAPVAPMVTVKKP------MPTITLSEKAAFQGLSGVTSHYFSHAELEELEAEADGATCTPASAPATLTAPSRRQGTRSCSVGSPSPSLAPASGNGASWDGTPSAASAAEGADSATQLELLAAAEGELRVAFDGHMKYLSELEEAKLAEMAAFQRAGEAALQNMERSRQATTEDALRLHKGFLTQRQRITRLRMQEVDQERARNQLESEKREARLKAEKEALSKACEQEAADLGNAWAVVEAAAGFVP 1282 MDPFDPDAIIHVLSRCEACQ+GQVGTRVCVEKGHHATVASVKRSARGSNFVDPYTEEEVDARYRLMLKPGE L II TNAVIDGAVKFAPGTVFQQPPNTKSQTLLGCFKNGVPLHDFVLGG +GAXXXXXX D RQ KR+AL+ GL PG+A KK PVAPMVTVKKP T TLSEKAA QGLSGVTS YF+ AELEELEAE +G P +RQGTRS SV S + GNGA WDGTP+AA +GADSATQLELL+AAEGELRVAFD HMKYLSE+EEAK AEMAAFQRAGEAALQNMERSR+ATT+D LRLHK FL QRQRITRLRM+EVDQERARNQ+ESEKREARLKAEKEALS+ACEQEAA+LGNAWAVVEAAAGF P Sbjct: 1 MDPFDPDAIIHVLSRCEACQMGQVGTRVCVEKGHHATVASVKRSARGSNFVDPYTEEEVDARYRLMLKPGEPLHIIKTNAVIDGAVKFAPGTVFQQPPNTKSQTLLGCFKNGVPLHDFVLGGNNSGAXXXXXXAKKERELEMDDRQPKRRALSQGLNPGSA-KKGPVAPMVTVKKPPTATTPTATATLSEKAAVQGLSGVTSQYFTRAELEELEAEEEG-----------TGRPGKRQGTRSSSVAGQSHA-----GNGAVWDGTPAAA---QGADSATQLELLSAAEGELRVAFDAHMKYLSEVEEAKRAEMAAFQRAGEAALQNMERSRKATTDDGLRLHKAFLNQRQRITRLRMEEVDQERARNQVESEKREARLKAEKEALSRACEQEAAELGNAWAVVEAAAGFAP 391
BLAST of mRNA_L-elsbetiae_contig129.2306.1 vs. uniprot
Match: A0A6H5KY16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY16_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 9.880e-12 Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 2 Query: 1151 QLESEKREARLKAEKEALSKACEQEAADLGNAWAVVEAAAGFVP 1282 Q+ESEKREARLKAEKEALS+ACEQE A+LGNAWAVVEAAAGF P Sbjct: 6 QVESEKREARLKAEKEALSRACEQEEAELGNAWAVVEAAAGFAP 49 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig129.2306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig129.2306.1 >prot_L-elsbetiae_contig129.2306.1 ID=prot_L-elsbetiae_contig129.2306.1|Name=mRNA_L-elsbetiae_contig129.2306.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=464bp MDPFDPDAIIHVLSRCEACQLGQVGTRVCVEKGHHATVASVKRSARGSNFback to top mRNA from alignment at L-elsbetiae_contig129:18191..26992- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig129.2306.1 ID=mRNA_L-elsbetiae_contig129.2306.1|Name=mRNA_L-elsbetiae_contig129.2306.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8802bp|location=Sequence derived from alignment at L-elsbetiae_contig129:18191..26992- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig129:18191..26992- >mRNA_L-elsbetiae_contig129.2306.1 ID=mRNA_L-elsbetiae_contig129.2306.1|Name=mRNA_L-elsbetiae_contig129.2306.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2784bp|location=Sequence derived from alignment at L-elsbetiae_contig129:18191..26992- (Laminarionema elsbetiae ELsaHSoW15)back to top |