mRNA_L-elsbetiae_contig12899.2304.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12899.2304.1
Unique NamemRNA_L-elsbetiae_contig12899.2304.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12899.2304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12899contigL-elsbetiae_contig12899:3702..4186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815473.139462-CDS-L-elsbetiae_contig12899:3701..40281622815473.139462-CDS-L-elsbetiae_contig12899:3701..4028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12899 3702..4028 +
1691682914.6112397-CDS-L-elsbetiae_contig12899:3701..40281691682914.6112397-CDS-L-elsbetiae_contig12899:3701..4028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12899 3702..4028 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815473.1500618-UTR-L-elsbetiae_contig12899:4028..41861622815473.1500618-UTR-L-elsbetiae_contig12899:4028..4186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12899 4029..4186 +
1691682914.6224382-UTR-L-elsbetiae_contig12899:4028..41861691682914.6224382-UTR-L-elsbetiae_contig12899:4028..4186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12899 4029..4186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12899.2304.1prot_L-elsbetiae_contig12899.2304.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12899 3702..4028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12899.2304.1

>prot_L-elsbetiae_contig12899.2304.1 ID=prot_L-elsbetiae_contig12899.2304.1|Name=mRNA_L-elsbetiae_contig12899.2304.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
GSRPFRIWSEERIVLFVFFPSRESKYGGGIKCLEASRVQTYTYIHAVVGI
VRTADTSAQCATCKAASAKHLVPRDVVLGIGQTQCAIFKAASGRPIQHCR
RHGIRETP*
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mRNA from alignment at L-elsbetiae_contig12899:3702..4186+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12899.2304.1 ID=mRNA_L-elsbetiae_contig12899.2304.1|Name=mRNA_L-elsbetiae_contig12899.2304.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=485bp|location=Sequence derived from alignment at L-elsbetiae_contig12899:3702..4186+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTCGCGACCGTTTCGGATTTGGTCGGAAGAGAGGATTGTTTTGTTTGT
TTTCTTCCCAAGTCGTGAGTCCAAGTACGGTGGTGGTATCAAATGTCTGG
AAGCATCTCGTGTCCAGACATATACATACATACATGCAGTAGTTGGTATC
GTAAGGACGGCAGATACCTCAGCACAGTGCGCCACATGTAAGGCTGCAAG
TGCGAAGCATCTCGTCCCCAGAGATGTGGTTCTTGGTATCGGACAAACAC
AGTGCGCCATTTTTAAGGCTGCAAGTGGGCGTCCAATTCAACATTGCCGA
CGACACGGTATCAGAGAAACACCGTAGTATATACCAGGTACCATACATAG
CTTGGACAACAGACGAGACGATAGACTGGGAGCCACAAGCATGCAAGGCG
ACGCATGCACGAGGGGAGAAAGACCATCATGGGCAGAATCAGAGGATTTT
TGTCCAAAGTGGGGGCGCTCGCTCTATCTCGTCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12899:3702..4186+

>mRNA_L-elsbetiae_contig12899.2304.1 ID=mRNA_L-elsbetiae_contig12899.2304.1|Name=mRNA_L-elsbetiae_contig12899.2304.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig12899:3702..4186+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTCGCGACCGTTTCGGATTTGGTCGGAAGAGAGGATTGTTTTGTTTGT
TTTCTTCCCAAGTCGTGAGTCCAAGTACGGTGGTGGTATCAAATGTCTGG
AAGCATCTCGTGTCCAGACATATACATACATACATGCAGTAGTTGGTATC
GTAAGGACGGCAGATACCTCAGCACAGTGCGCCACATGTAAGGCTGCAAG
TGCGAAGCATCTCGTCCCCAGAGATGTGGTTCTTGGTATCGGACAAACAC
AGTGCGCCATTTTTAAGGCTGCAAGTGGGCGTCCAATTCAACATTGCCGA
CGACACGGTATCAGAGAAACACCGTAGGGGTCGCGACCGTTTCGGATTTG
GTCGGAAGAGAGGATTGTTTTGTTTGTTTTCTTCCCAAGTCGTGAGTCCA
AGTACGGTGGTGGTATCAAATGTCTGGAAGCATCTCGTGTCCAGACATAT
ACATACATACATGCAGTAGTTGGTATCGTAAGGACGGCAGATACCTCAGC
ACAGTGCGCCACATGTAAGGCTGCAAGTGCGAAGCATCTCGTCCCCAGAG
ATGTGGTTCTTGGTATCGGACAAACACAGTGCGCCATTTTTAAGGCTGCA
AGTGGGCGTCCAATTCAACATTGCCGACGACACGGTATCAGAGAAACACC
GTAG
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