mRNA_L-elsbetiae_contig12899.2303.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12899.2303.1
Unique NamemRNA_L-elsbetiae_contig12899.2303.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12899.2303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12899contigL-elsbetiae_contig12899:995..3463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size461
Cds size444
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12899.2303.1prot_L-elsbetiae_contig12899.2303.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12899 995..3446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815473.025635-CDS-L-elsbetiae_contig12899:994..11711622815473.025635-CDS-L-elsbetiae_contig12899:994..1171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12899 995..1171 +
1691682914.5568018-CDS-L-elsbetiae_contig12899:994..11711691682914.5568018-CDS-L-elsbetiae_contig12899:994..1171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12899 995..1171 +
1622815473.0405264-CDS-L-elsbetiae_contig12899:2361..24571622815473.0405264-CDS-L-elsbetiae_contig12899:2361..2457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12899 2362..2457 +
1691682914.5727046-CDS-L-elsbetiae_contig12899:2361..24571691682914.5727046-CDS-L-elsbetiae_contig12899:2361..2457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12899 2362..2457 +
1622815473.0868418-CDS-L-elsbetiae_contig12899:3275..34461622815473.0868418-CDS-L-elsbetiae_contig12899:3275..3446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12899 3276..3446 +
1691682914.5845978-CDS-L-elsbetiae_contig12899:3275..34461691682914.5845978-CDS-L-elsbetiae_contig12899:3275..3446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12899 3276..3446 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815473.0986202-UTR-L-elsbetiae_contig12899:3446..34631622815473.0986202-UTR-L-elsbetiae_contig12899:3446..3463Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12899 3447..3463 +
1691682914.60171-UTR-L-elsbetiae_contig12899:3446..34631691682914.60171-UTR-L-elsbetiae_contig12899:3446..3463Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12899 3447..3463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12899.2303.1

>prot_L-elsbetiae_contig12899.2303.1 ID=prot_L-elsbetiae_contig12899.2303.1|Name=mRNA_L-elsbetiae_contig12899.2303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
DASGASLVYCRFGEGWVEGVGPPLFRGARDGVRGGRRPERDLRRPGRHRT
AGRCFREAIDRSRRHQLPGGGARGEAAENRLVIRIRRHATLARRGMSLSL
RVRSMSVVVGRGREGCRQLEHDFEPTLWSERGGSTCSVCVCVCVCVF*
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mRNA from alignment at L-elsbetiae_contig12899:995..3463+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12899.2303.1 ID=mRNA_L-elsbetiae_contig12899.2303.1|Name=mRNA_L-elsbetiae_contig12899.2303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2469bp|location=Sequence derived from alignment at L-elsbetiae_contig12899:995..3463+ (Laminarionema elsbetiae ELsaHSoW15)
GACGCGAGCGGAGCTAGCCTCGTGTACTGCCGATTTGGCGAGGGCTGGGT
CGAAGGCGTCGGACCTCCTCTTTTCCGTGGCGCTCGCGACGGCGTACGTG
GGGGGAGGCGGCCTGAACGCGACCTGCGGCGTCCCGGACGGCATCGAACA
GCCGGGCGATGCTTTCGAGAAGCTATCGTAAGTACATACCCCGCCCACCT
CTCCGCGGCTATGCTGTAGGTAACGGAGTTCTCCCTCCCCCCCCCCCCCC
ATCGCCTCTTCGGCCTGGAAGCACATCAGTTCTTTGATTTATTCCCCCCG
GGAAATATTGATTTTAGGGGGAAAGATCCCCCCCCCCCCAGGGTATATCC
GTCAATCCCCCCCCCCGGGGTACCAGTTTTTTCGCGAGTTCCCCCCGGGG
GGGGTGGGTGTGGGTTTTACCGATTTTTACTCGTTTTTTCCACTCGCTTT
TTCGTGCATCGCGAAGCCCTAACTAAGAGCGTGGTAAGGGGCGAAATTTT
CATCTGCGAATCATCAGTTATTGTGAGCAGCTTCCATGCGGCATGTGCCA
TTGGGGGCTTGAAACTACATTTATTGGGCGCGGTGCTGTCGTTTTTTTCT
TGTATTCACGTCTCCGGGGTATTTTAGCGTTGGAAAAAAAACTACGTACC
CCCCTGGGTACGTCATTTTCTCCCCGGGGCGAAAACTCCACAACTAACTA
CCGTAGGTGACATAAGATAAGACACCCCCTGGACCGATTTTCAAAGCTCA
AGTACTCCACAGCAAGCAGAGTGTCAGTCCCGAAAAGGGAGGCGTTCGAA
AGATTTCGTCGAGAGCGGTCCGAAAATGTGGCGTTTGTGGAAAGAATCGT
ATTCGTTGCGGAGTAACCAAGCTTTCAATATCGGTCCAGGGGGTGTCTTA
TCTTCTGTCACCCACGGTACGATAAATGATCGGCAAGAGAGGGAGCTTGC
CGTTACCGAAGCCGTTGGTGGTGGGTGAGCTGTCGGGAAATTTCCTCGCC
CGTTTTGTTGTGGTCGGCGTGCATACGTTTGAGGTCTCCTTGGGTTCAAG
ACCCGACCCCCCACGCCATATACGTATCAATTATGTACCATAGGCGTCCT
CAGGCGCAGAAGAAGTCTAACCGATGATGATGGTTTAGTACGGGACGCGT
CACCGCGCCCGATAGTCTGTCTACCCTCCGAGACGGAGTATTTTTTTTCG
GATCTCTGGCGTTCGTCTTTGTATTCGGTTGACAATGTGCTGTGCTTTTG
TTTGTTTTTGTTTCCATCATTGGCAAAACTTCTGCCCTTCTCTAATCGAT
CTTGTGTCGTTTCTCCTCTCCCCCTCTCCGCGACTACGTTTCATACATCG
ATGCTTGCTTGGTATAGGACCGATCTCGACGACATCAACTCCCTGGTGGA
GGGGCTCGTGGAGAAGCTGCAGAAAACCGGCTCGTCATCCGGATTCGACG
ACACGCTACTCTGGTGAGGCTTGATACGGAACAGCGTGCATGTGCGTGCG
TGCGTGCGTGCGGGGAGTTGCAGTTATTTGTCGTTATTGCTGTTGTTGTT
GTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGTT
CGTAGGCATCGTTATTTTCTCGTCATACGGGAAGCTGTTTCGGTCGATGT
ACGCCTGATTCGAAGCTCTGCCGTATCTACGAATCAACCGAAAATAGCTT
CTCCCTCGGGGGCACAGTAGATAGATCCTACTACGTACGGAGTACATACC
ATTACTAAATACCGGTAATTGTAAAAACACACACAAAACAAATACCATGT
ATTGTTTCGGTGGGTTGCTTTGGCGTGTTTTTGTCTCCGTCTTATTTGCG
GATTGTTTTCAACCCGGCATGTATTTTCCGAGTGGGTATGTACCCTGATC
TGATTTGTTTTTTTAGTGCCAGCGAGATGCAAGACCCCCCCCCCCCCGAG
TTAGTTTCGTATCGCCTGGCGCGTAGTATGTATATACCATAGTTTAGTTT
AGTTTTACTTTTTCTTGAGCGGCGTCGAGTGTACCCCCCTGTTTTTGTTA
CCACGTCCCCCCCCATGGATGATGTTTTTGGACTATCTAGAGAGCTAATG
TGAGAAACAACAACAAACGCGCATACTTCTATATAATATATGCTGTGCGT
AGATAAACAGAGAAATGAAAGCAGCGATCGACTCCCTTCTCCGGGTATTC
AACCTGCCACGCGCACGCGCAAAGCTAAGGCACTGACTGACCGCTGGCGA
ACCCTTGCTGCTACCCTTGCTTGTTGACCAGGCCCGGCGGGGGATGAGCT
TAAGCTTAAGAGTTCGATCGATGTCCGTCGTGGTTGGAAGAGGGAGGGAG
GGGTGTCGTCAACTTGAGCACGATTTCGAGCCCACCCTGTGGTCCGAGCG
TGGAGGCTCGACTTGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTT
AGTTCGATCAATGTCCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12899:995..3463+

>mRNA_L-elsbetiae_contig12899.2303.1 ID=mRNA_L-elsbetiae_contig12899.2303.1|Name=mRNA_L-elsbetiae_contig12899.2303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig12899:995..3463+ (Laminarionema elsbetiae ELsaHSoW15)
GACGCGAGCGGAGCTAGCCTCGTGTACTGCCGATTTGGCGAGGGCTGGGT
CGAAGGCGTCGGACCTCCTCTTTTCCGTGGCGCTCGCGACGGCGTACGTG
GGGGGAGGCGGCCTGAACGCGACCTGCGGCGTCCCGGACGGCATCGAACA
GCCGGGCGATGCTTTCGAGAAGCTATCGACGCGAGCGGAGCTAGCCTCGT
GTACTGCCGATTTGGCGAGGGCTGGGTCGAAGGCGTCGGACCTCCTCTTT
TCCGTGGCGCTCGCGACGGCGTACGTGGGGGGAGGCGGCCTGAACGCGAC
CTGCGGCGTCCCGGACGGCATCGAACAGCCGGGCGATGCTTTCGAGAAGC
TATCGACCGATCTCGACGACATCAACTCCCTGGTGGAGGGGCTCGTGGAG
AAGCTGCAGAAAACCGGCTCGTCATCCGGATTCGACGACACGCTACTCTG
GACCGATCTCGACGACATCAACTCCCTGGTGGAGGGGCTCGTGGAGAAGC
TGCAGAAAACCGGCTCGTCATCCGGATTCGACGACACGCTACTCTGGCCC
GGCGGGGGATGAGCTTAAGCTTAAGAGTTCGATCGATGTCCGTCGTGGTT
GGAAGAGGGAGGGAGGGGTGTCGTCAACTTGAGCACGATTTCGAGCCCAC
CCTGTGGTCCGAGCGTGGAGGCTCGACTTGCAGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTTTTAGGCCCGGCGGGGGATGAGCTTAAGCTTAAGAGTT
CGATCGATGTCCGTCGTGGTTGGAAGAGGGAGGGAGGGGTGTCGTCAACT
TGAGCACGATTTCGAGCCCACCCTGTGGTCCGAGCGTGGAGGCTCGACTT
GCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTAG
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