mRNA_L-elsbetiae_contig12897.2301.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12897.2301.1
Unique NamemRNA_L-elsbetiae_contig12897.2301.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12897.2301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12897contigL-elsbetiae_contig12897:2206..2793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size286
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815472.9012463-CDS-L-elsbetiae_contig12897:2205..24011622815472.9012463-CDS-L-elsbetiae_contig12897:2205..2401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12897 2206..2401 +
1691682914.485269-CDS-L-elsbetiae_contig12897:2205..24011691682914.485269-CDS-L-elsbetiae_contig12897:2205..2401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12897 2206..2401 +
1622815472.9114575-CDS-L-elsbetiae_contig12897:2704..27931622815472.9114575-CDS-L-elsbetiae_contig12897:2704..2793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12897 2705..2793 +
1691682914.4970367-CDS-L-elsbetiae_contig12897:2704..27931691682914.4970367-CDS-L-elsbetiae_contig12897:2704..2793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12897 2705..2793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12897.2301.1prot_L-elsbetiae_contig12897.2301.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12897 2206..2793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12897.2301.1

>prot_L-elsbetiae_contig12897.2301.1 ID=prot_L-elsbetiae_contig12897.2301.1|Name=mRNA_L-elsbetiae_contig12897.2301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
NNIPGLVSGDGTVCCDLECGQCGGFECQLLPGGAGNCCIGGPNGILNHAP
FCDKPGVTAPCQTRDEPTPAPTVEETPTLTTAPVAGAKSLVMQI*
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mRNA from alignment at L-elsbetiae_contig12897:2206..2793+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12897.2301.1 ID=mRNA_L-elsbetiae_contig12897.2301.1|Name=mRNA_L-elsbetiae_contig12897.2301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig12897:2206..2793+ (Laminarionema elsbetiae ELsaHSoW15)
AACAATATTCCGGGTCTCGTCTCCGGCGACGGCACCGTGTGCTGCGACCT
TGAGTGCGGACAGTGCGGAGGGTTCGAGTGCCAGCTTTTACCCGGGGGTG
CAGGCAACTGTTGCATCGGCGGGCCGAACGGCATCCTCAACCACGCACCT
TTCTGCGACAAGCCCGGAGTTACTGCCCCTTGCCAAACTCGTGACGGTAT
GTTGATGTTGTTGCTCTCGTGTCCAATGTAGAATACATCAATCTCGATGT
TTGTCGGTTAAAAACACAGTTCCTTTCCGTGCCTCGCCTTTTTCTCGCTT
TATCGCGTCGTTCGGTGAGAAAGCACTGCGGCATAAATATCCTCTCGACG
GCGCGGAAGAATGTACATAGTGGATGCTTTGTTCACCCACCTCATTTCTC
GCTGGACCACTGCTCTTCCCTTGCCGACACGCAGATCATCTATACACGTG
TATCCCACTGTTCGACCAATGCTGTCGTCTTCCGTGCCCCTCTTCACAGA
ACCCACCCCAGCCCCCACCGTTGAAGAGACCCCAACACTGACGACCGCCC
CGGTAGCAGGTGCGAAATCGCTCGTTATGCAGATATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12897:2206..2793+

>mRNA_L-elsbetiae_contig12897.2301.1 ID=mRNA_L-elsbetiae_contig12897.2301.1|Name=mRNA_L-elsbetiae_contig12897.2301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig12897:2206..2793+ (Laminarionema elsbetiae ELsaHSoW15)
AACAATATTCCGGGTCTCGTCTCCGGCGACGGCACCGTGTGCTGCGACCT
TGAGTGCGGACAGTGCGGAGGGTTCGAGTGCCAGCTTTTACCCGGGGGTG
CAGGCAACTGTTGCATCGGCGGGCCGAACGGCATCCTCAACCACGCACCT
TTCTGCGACAAGCCCGGAGTTACTGCCCCTTGCCAAACTCGTGACGAACA
ATATTCCGGGTCTCGTCTCCGGCGACGGCACCGTGTGCTGCGACCTTGAG
TGCGGACAGTGCGGAGGGTTCGAGTGCCAGCTTTTACCCGGGGGTGCAGG
CAACTGTTGCATCGGCGGGCCGAACGGCATCCTCAACCACGCACCTTTCT
GCGACAAGCCCGGAGTTACTGCCCCTTGCCAAACTCGTGACGAACCCACC
CCAGCCCCCACCGTTGAAGAGACCCCAACACTGACGACCGCCCCGGTAGC
AGGTGCGAAATCGCTCGTTATGCAGATATAGAACCCACCCCAGCCCCCAC
CGTTGAAGAGACCCCAACACTGACGACCGCCCCGGTAGCAGGTGCGAAAT
CGCTCGTTATGCAGATATAG
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