mRNA_L-elsbetiae_contig12893.2299.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12893.2299.1
Unique NamemRNA_L-elsbetiae_contig12893.2299.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12893.2299.1 vs. uniprot
Match: D7FL43_ECTSI (UDP-glucose 4-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL43_ECTSI)

HSP 1 Score: 378 bits (971), Expect = 9.570e-130
Identity = 179/198 (90.40%), Postives = 190/198 (95.96%), Query Frame = 1 
Query:    1 PVRLARNNIEGTLNLVECMQKQPGCRKLVFSSSATVYGDPDKLPLDESSSVGVGITNPYGATKYMIEEILGDMAKADASWDILLLRYFNPIGAHESGKIGEDPEGIPNNLMPFVAQVCVGRRDFLSVFGNDYGTPDGTGVRDYIHVMDLAEGHVAAVKKLRESCTGCAAVNLGTGVGYSVMDVVKGMEDACGKPIPYE 594
            P+   RNNIEGTLNLVECMQKQPGCRKLVFSSSATVYG+PDKLPLDESSSVGVGITNPYG TKYMIEEIL DM+K+D SWDILLLRYFNPIGAHESG++GEDPEGIPNNLMPFVAQVCVGRR+FLSVFG+DYGTPDGTGVRDYIHVMDLAEGHVAAV+KLRESCTGCAAVNLGTG GYSVMDVVKGME+ACG PIPY+
Sbjct:  129 PLLYYRNNIEGTLNLVECMQKQPGCRKLVFSSSATVYGEPDKLPLDESSSVGVGITNPYGRTKYMIEEILRDMSKSDPSWDILLLRYFNPIGAHESGRMGEDPEGIPNNLMPFVAQVCVGRREFLSVFGDDYGTPDGTGVRDYIHVMDLAEGHVAAVRKLRESCTGCAAVNLGTGSGYSVMDVVKGMEEACGNPIPYK 326
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BLAST of mRNA_L-elsbetiae_contig12893.2299.1 vs. uniprot
Match: A0A835YLY8_9STRA (Galactose-4-epimerase, UDP n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY8_9STRA)

HSP 1 Score: 310 bits (793), Expect = 3.610e-102
Identity = 151/198 (76.26%), Postives = 168/198 (84.85%), Query Frame = 1 
Query:    1 PVRLARNNIEGTLNLVECMQKQPGCRKLVFSSSATVYGDPDKLPLDESSSVGVGITNPYGATKYMIEEILGDMAKADASWDILLLRYFNPIGAHESGKIGEDPEGIPNNLMPFVAQVCVGRRDFLSVFGNDYGTPDGTGVRDYIHVMDLAEGHVAAVKKLRESCTGCAAVNLGTGVGYSVMDVVKGMEDACGKPIPYE 594
            P+   RNNIEGTLNLVE M++  GC+KLVFSSSATVYG P+KLPLDE S VG GITNPYG TKYMIEEIL D   AD +W+IL+LRYFNPIGAHESG+IGEDP+GIPNNLMPFVAQV VGRR+FL+VFG+DY TPDGTGVRDYIHV DLAEGHVAA+ KLR+   GC AVNLGTG GYSV +VVK ME A GK IPY+
Sbjct:  120 PLMYYRNNIEGTLNLVEAMREH-GCKKLVFSSSATVYGTPEKLPLDEKSRVGPGITNPYGRTKYMIEEILRDEQVADPTWEILILRYFNPIGAHESGRIGEDPDGIPNNLMPFVAQVAVGRREFLAVFGDDYSTPDGTGVRDYIHVCDLAEGHVAALNKLRKGGVGCEAVNLGTGKGYSVFEVVKAMEAASGKKIPYK 316
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BLAST of mRNA_L-elsbetiae_contig12893.2299.1 vs. uniprot
Match: UPI001561660C (UDP-glucose 4-epimerase-like isoform X1 n=6 Tax=Acipenseroidei TaxID=186622 RepID=UPI001561660C)

HSP 1 Score: 275 bits (702), Expect = 2.540e-89
Identity = 130/198 (65.66%), Postives = 157/198 (79.29%), Query Frame = 1 
Query:    1 PVRLARNNIEGTLNLVECMQKQPGCRKLVFSSSATVYGDPDKLPLDESSSVGVGITNPYGATKYMIEEILGDMAKADASWDILLLRYFNPIGAHESGKIGEDPEGIPNNLMPFVAQVCVGRRDFLSVFGNDYGTPDGTGVRDYIHVMDLAEGHVAAVKKLRESCTGCAAVNLGTGVGYSVMDVVKGMEDACGKPIPYE 594
            P++  R N+ GT+NL+E M    G   +VFSSSATVYGDP +LP+DE    G G TNPYG TKY IEE++ D  +A+  W+ +LLRYFNPIGAH+SG+IGEDP+GIPNNL+PFVAQV +GRR+ LSVFG DYGTPDGTGVRDYIHV+DLA+GH+AAVKKL E C GC   NLGTG GYSV+++VK ME A GK IPY+
Sbjct:  101 PLKYYRVNLTGTINLLEAMHAH-GVLNIVFSSSATVYGDPQRLPIDEDHPAG-GCTNPYGKTKYFIEEMIQDQCRAEKGWNAVLLRYFNPIGAHQSGQIGEDPQGIPNNLLPFVAQVAIGRREHLSVFGKDYGTPDGTGVRDYIHVVDLAKGHIAAVKKLEEKC-GCKVYNLGTGTGYSVLEMVKAMEKASGKEIPYQ 295
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BLAST of mRNA_L-elsbetiae_contig12893.2299.1 vs. uniprot
Match: UPI001BB1342C (UDP-glucose 4-epimerase-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1342C)

HSP 1 Score: 271 bits (692), Expect = 7.340e-88
Identity = 130/198 (65.66%), Postives = 155/198 (78.28%), Query Frame = 1 
Query:    1 PVRLARNNIEGTLNLVECMQKQPGCRKLVFSSSATVYGDPDKLPLDESSSVGVGITNPYGATKYMIEEILGDMAKADASWDILLLRYFNPIGAHESGKIGEDPEGIPNNLMPFVAQVCVGRRDFLSVFGNDYGTPDGTGVRDYIHVMDLAEGHVAAVKKLRESCTGCAAVNLGTGVGYSVMDVVKGMEDACGKPIPYE 594
            P+     N+ GT+ L+E M KQ GC  ++FSSSATVYG PD LP+DE   VG GITNPYG TK+ IEEIL D+AKA+  W+I++LRYFNP+GAH+SG IGE+P+GIPNNLMPFV+QV VGRR+ + VFG DY TPDGTGVRDYIHV+DLA GHVAAVKK  E C G    NLG+G GYSV+D+VK M  ACGK +PYE
Sbjct:  102 PIEYYNCNVGGTICLLEVM-KQFGCYNMIFSSSATVYGPPDYLPIDEKHHVGRGITNPYGKTKFFIEEILTDLAKAEKEWNIVILRYFNPVGAHKSGLIGENPQGIPNNLMPFVSQVAVGRRECVKVFGTDYDTPDGTGVRDYIHVLDLASGHVAAVKKASEGC-GLKVYNLGSGKGYSVLDMVKAMGKACGKELPYE 297
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BLAST of mRNA_L-elsbetiae_contig12893.2299.1 vs. uniprot
Match: UPI001863FE90 (UDP-glucose 4-epimerase isoform X1 n=2 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001863FE90)

HSP 1 Score: 271 bits (692), Expect = 8.310e-88
Identity = 129/198 (65.15%), Postives = 157/198 (79.29%), Query Frame = 1 
Query:    1 PVRLARNNIEGTLNLVECMQKQPGCRKLVFSSSATVYGDPDKLPLDESSSVGVGITNPYGATKYMIEEILGDMAKADASWDILLLRYFNPIGAHESGKIGEDPEGIPNNLMPFVAQVCVGRRDFLSVFGNDYGTPDGTGVRDYIHVMDLAEGHVAAVKKLRESCTGCAAVNLGTGVGYSVMDVVKGMEDACGKPIPYE 594
            P+R  R N+ GT+NL+E MQ   G   +VFSSSATVYGDP +LP+DE   VG G TNPYG TKY IEE++ D  +A+  W+ +LLRYFNPIGAH SG+IGEDP+GIPNNLMP+VAQV +GRR+ L+VFGNDY TPDGTGVRDYIHV+DLA+GH+AA+KKL E+C GC   NLGTG GYSV+ +VK ME A G+ I Y+
Sbjct:  101 PLRYYRVNLTGTINLLEVMQAY-GVHNIVFSSSATVYGDPQRLPIDEDHPVG-GCTNPYGKTKYFIEEMIQDQCQAEKDWNAVLLRYFNPIGAHSSGRIGEDPQGIPNNLMPYVAQVAIGRREHLNVFGNDYNTPDGTGVRDYIHVVDLAKGHIAALKKLNENC-GCKVYNLGTGTGYSVLQMVKAMEKASGREIRYK 295
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BLAST of mRNA_L-elsbetiae_contig12893.2299.1 vs. uniprot
Match: A0A2R8QNG9_DANRE (UDP-glucose 4-epimerase n=8 Tax=Cyprinoidei TaxID=30727 RepID=A0A2R8QNG9_DANRE)

HSP 1 Score: 270 bits (691), Expect = 1.140e-87
Identity = 130/198 (65.66%), Postives = 156/198 (78.79%), Query Frame = 1 
Query:    1 PVRLARNNIEGTLNLVECMQKQPGCRKLVFSSSATVYGDPDKLPLDESSSVGVGITNPYGATKYMIEEILGDMAKADASWDILLLRYFNPIGAHESGKIGEDPEGIPNNLMPFVAQVCVGRRDFLSVFGNDYGTPDGTGVRDYIHVMDLAEGHVAAVKKLRESCTGCAAVNLGTGVGYSVMDVVKGMEDACGKPIPYE 594
            P+R  R N+ GT+NL+E MQ   G R LVFSSSATVYGDP KLP+DE   VG G TNPYG TKY IEE++ D   A+  W+ +LLRYFNPIGAH SG+IGEDP+GIPNNL+P+VAQV +GRR  L+VFGNDY TPDGTGVRDYIHV+DLA+GH+AAV+KL++SC GC   NLGTG GYSV+ +V  ME A G+ I Y+
Sbjct:  100 PLRYYRVNLTGTINLLEVMQSH-GVRNLVFSSSATVYGDPQKLPIDEQHPVG-GCTNPYGKTKYFIEEMIRDQCTAEKDWNAVLLRYFNPIGAHISGQIGEDPQGIPNNLLPYVAQVAIGRRKHLNVFGNDYSTPDGTGVRDYIHVVDLAKGHIAAVRKLKDSC-GCKVYNLGTGTGYSVLQMVSAMEKASGRKIAYQ 294
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BLAST of mRNA_L-elsbetiae_contig12893.2299.1 vs. uniprot
Match: F1Q5H4_DANRE (UDP-glucose 4-epimerase n=23 Tax=Ostariophysi TaxID=32519 RepID=F1Q5H4_DANRE)

HSP 1 Score: 270 bits (691), Expect = 1.180e-87
Identity = 130/198 (65.66%), Postives = 156/198 (78.79%), Query Frame = 1 
Query:    1 PVRLARNNIEGTLNLVECMQKQPGCRKLVFSSSATVYGDPDKLPLDESSSVGVGITNPYGATKYMIEEILGDMAKADASWDILLLRYFNPIGAHESGKIGEDPEGIPNNLMPFVAQVCVGRRDFLSVFGNDYGTPDGTGVRDYIHVMDLAEGHVAAVKKLRESCTGCAAVNLGTGVGYSVMDVVKGMEDACGKPIPYE 594
            P+R  R N+ GT+NL+E MQ   G R LVFSSSATVYGDP KLP+DE   VG G TNPYG TKY IEE++ D   A+  W+ +LLRYFNPIGAH SG+IGEDP+GIPNNL+P+VAQV +GRR  L+VFGNDY TPDGTGVRDYIHV+DLA+GH+AAV+KL++SC GC   NLGTG GYSV+ +V  ME A G+ I Y+
Sbjct:  101 PLRYYRVNLTGTINLLEVMQSH-GVRNLVFSSSATVYGDPQKLPIDEQHPVG-GCTNPYGKTKYFIEEMIRDQCTAEKDWNAVLLRYFNPIGAHISGQIGEDPQGIPNNLLPYVAQVAIGRRKHLNVFGNDYSTPDGTGVRDYIHVVDLAKGHIAAVRKLKDSC-GCKVYNLGTGTGYSVLQMVSAMEKASGRKIAYQ 295
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BLAST of mRNA_L-elsbetiae_contig12893.2299.1 vs. uniprot
Match: A0A8C4SQ73_ERPCA (UDP-glucose 4-epimerase n=3 Tax=Polypteridae TaxID=8289 RepID=A0A8C4SQ73_ERPCA)

HSP 1 Score: 270 bits (690), Expect = 1.340e-87
Identity = 128/198 (64.65%), Postives = 157/198 (79.29%), Query Frame = 1 
Query:    1 PVRLARNNIEGTLNLVECMQKQPGCRKLVFSSSATVYGDPDKLPLDESSSVGVGITNPYGATKYMIEEILGDMAKADASWDILLLRYFNPIGAHESGKIGEDPEGIPNNLMPFVAQVCVGRRDFLSVFGNDYGTPDGTGVRDYIHVMDLAEGHVAAVKKLRESCTGCAAVNLGTGVGYSVMDVVKGMEDACGKPIPYE 594
            P+   R N+ GT+NL+E MQK  G   +VFSSSATVYGDP KLP+DE   VG G TNPYG TKY IEE++ D  +A   W+ +LLRYFNPIGAH SG IGEDP+GIPNNL+P++AQV +GRR++L+VFGNDY TPDGTGVRDYIHV+DLA+GH+AA+KKL+E+C GC   NLGTG GYSV+ +V+ ME A GK I Y+
Sbjct:  100 PLMYYRVNLTGTINLLETMQKH-GVHNIVFSSSATVYGDPKKLPIDEVHPVG-GCTNPYGKTKYFIEEMIVDQCRAQKDWNAVLLRYFNPIGAHHSGMIGEDPQGIPNNLLPYIAQVAIGRREYLNVFGNDYNTPDGTGVRDYIHVVDLAKGHIAALKKLKENC-GCKVYNLGTGTGYSVLQMVQAMEKASGKQIKYK 294
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BLAST of mRNA_L-elsbetiae_contig12893.2299.1 vs. uniprot
Match: A0A6P6RA64_CARAU (UDP-glucose 4-epimerase n=24 Tax=Cyprinidae TaxID=7953 RepID=A0A6P6RA64_CARAU)

HSP 1 Score: 270 bits (690), Expect = 1.670e-87
Identity = 129/198 (65.15%), Postives = 157/198 (79.29%), Query Frame = 1 
Query:    1 PVRLARNNIEGTLNLVECMQKQPGCRKLVFSSSATVYGDPDKLPLDESSSVGVGITNPYGATKYMIEEILGDMAKADASWDILLLRYFNPIGAHESGKIGEDPEGIPNNLMPFVAQVCVGRRDFLSVFGNDYGTPDGTGVRDYIHVMDLAEGHVAAVKKLRESCTGCAAVNLGTGVGYSVMDVVKGMEDACGKPIPYE 594
            P+R  R N+ GT+NL+E MQ   G R LVFSSSATVYGDP KLP+DE   VG G TNPYG TKY IEE++ D   A+  W+ +LLRYFNPIGAH SG+IGEDP+GIPNNL+P+VAQV +GRR+ L+VFGNDY TPDGTGVRDYIHV+DLA+GH+AAV+KL+++C GC   NLGTG GYSV+ +V  ME A G+ I Y+
Sbjct:  101 PLRYYRVNLTGTINLLEVMQSH-GVRNLVFSSSATVYGDPQKLPIDEQHPVG-GCTNPYGKTKYFIEEMIRDQCTAEKDWNAVLLRYFNPIGAHISGQIGEDPQGIPNNLLPYVAQVAIGRRNHLNVFGNDYSTPDGTGVRDYIHVVDLAKGHIAAVRKLKDNC-GCKVYNLGTGTGYSVLQMVNAMEKASGRKIAYQ 295
[Close]
BLAST of mRNA_L-elsbetiae_contig12893.2299.1 vs. uniprot
Match: A0A7K5G6X8_9AVES (UDP-glucose 4-epimerase (Fragment) n=6 Tax=Neognathae TaxID=8825 RepID=A0A7K5G6X8_9AVES)

HSP 1 Score: 270 bits (689), Expect = 2.160e-87
Identity = 132/198 (66.67%), Postives = 158/198 (79.80%), Query Frame = 1 
Query:    1 PVRLARNNIEGTLNLVECMQKQPGCRKLVFSSSATVYGDPDKLPLDESSSVGVGITNPYGATKYMIEEILGDMAKADASWDILLLRYFNPIGAHESGKIGEDPEGIPNNLMPFVAQVCVGRRDFLSVFGNDYGTPDGTGVRDYIHVMDLAEGHVAAVKKLRESCTGCAAVNLGTGVGYSVMDVVKGMEDACGKPIPYE 594
            P+   R N+ GT+ L+E M K  G R +VFSSSATVYGDP  LPLDE+  VG G TNPYG +KY IEE++ D+ KA+  W+ +LLRYFNPIGAHESG IGEDP+GIPNNLMP+VAQV VGRR+FLSVFGNDY T DGTGVRDYIHV+DLA+GH+AA+KKLRE+C GC   NLGTG GYSV+ +V+ ME A G+ I Y+
Sbjct:  104 PLEYYRVNLTGTIRLLETM-KAHGVRNIVFSSSATVYGDPKYLPLDENHPVG-GCTNPYGKSKYFIEEMIRDLCKAERDWNAVLLRYFNPIGAHESGMIGEDPQGIPNNLMPYVAQVAVGRREFLSVFGNDYKTEDGTGVRDYIHVVDLAKGHIAALKKLRENC-GCKIYNLGTGTGYSVLQMVQAMEKASGREIKYK 298
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12893.2299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL43_ECTSI9.570e-13090.40UDP-glucose 4-epimerase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLY8_9STRA3.610e-10276.26Galactose-4-epimerase, UDP n=1 Tax=Tribonema minus... [more]
UPI001561660C2.540e-8965.66UDP-glucose 4-epimerase-like isoform X1 n=6 Tax=Ac... [more]
UPI001BB1342C7.340e-8865.66UDP-glucose 4-epimerase-like n=1 Tax=Lytechinus va... [more]
UPI001863FE908.310e-8865.15UDP-glucose 4-epimerase isoform X1 n=2 Tax=Megalop... [more]
A0A2R8QNG9_DANRE1.140e-8765.66UDP-glucose 4-epimerase n=8 Tax=Cyprinoidei TaxID=... [more]
F1Q5H4_DANRE1.180e-8765.66UDP-glucose 4-epimerase n=23 Tax=Ostariophysi TaxI... [more]
A0A8C4SQ73_ERPCA1.340e-8764.65UDP-glucose 4-epimerase n=3 Tax=Polypteridae TaxID... [more]
A0A6P6RA64_CARAU1.670e-8765.15UDP-glucose 4-epimerase n=24 Tax=Cyprinidae TaxID=... [more]
A0A7K5G6X8_9AVES2.160e-8766.67UDP-glucose 4-epimerase (Fragment) n=6 Tax=Neognat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12893contigL-elsbetiae_contig12893:12..4113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score380.6
Seed ortholog evalue4.6e-103
Seed eggNOG ortholog2880.D7FL43
Preferred nameUGE1
KEGG rclassRC00289
KEGG koko:K01784
KEGG ReactionR00291,R02984
KEGG Pathwayko00052,ko00520,ko01100,map00052,map00520,map01100
KEGG ModuleM00361,M00362,M00632
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0003674,GO:0003824,GO:0003978,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005829,GO:0005886,GO:0005975,GO:0005976,GO:0006073,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009555,GO:0009653,GO:0009832,GO:0009888,GO:0009969,GO:0009987,GO:0010015,GO:0010053,GO:0010383,GO:0010410,GO:0010411,GO:0012505,GO:0016020,GO:0016051,GO:0016853,GO:0016854,GO:0016857,GO:0022622,GO:0030154,GO:0031984,GO:0032501,GO:0032502,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044036,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048869,GO:0050373,GO:0071554,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0090558,GO:0090627,GO:0098791,GO:0099402,GO:1901576,GO:1905392
EggNOG free text desc.racemase and epimerase activity, acting on carbohydrates and derivatives
EggNOG OGsCOG1087@1,KOG1371@2759
EC5.1.3.2
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Ec32 ortholog descriptiongalactose-4-epimerase, UDP
Ec32 orthologEc-05_006710.1
Exons4
Model size594
Cds size594
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12893.2299.1prot_L-elsbetiae_contig12893.2299.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12893 12..4113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815472.7190454-CDS-L-elsbetiae_contig12893:11..1281622815472.7190454-CDS-L-elsbetiae_contig12893:11..128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12893 12..128 -
1691682914.392884-CDS-L-elsbetiae_contig12893:11..1281691682914.392884-CDS-L-elsbetiae_contig12893:11..128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12893 12..128 -
1622815472.7301314-CDS-L-elsbetiae_contig12893:1646..17751622815472.7301314-CDS-L-elsbetiae_contig12893:1646..1775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12893 1647..1775 -
1691682914.407907-CDS-L-elsbetiae_contig12893:1646..17751691682914.407907-CDS-L-elsbetiae_contig12893:1646..1775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12893 1647..1775 -
1622815472.7394412-CDS-L-elsbetiae_contig12893:2267..24331622815472.7394412-CDS-L-elsbetiae_contig12893:2267..2433Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12893 2268..2433 -
1691682914.4168415-CDS-L-elsbetiae_contig12893:2267..24331691682914.4168415-CDS-L-elsbetiae_contig12893:2267..2433Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12893 2268..2433 -
1622815472.7495987-CDS-L-elsbetiae_contig12893:3931..41131622815472.7495987-CDS-L-elsbetiae_contig12893:3931..4113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12893 3932..4113 -
1691682914.4293554-CDS-L-elsbetiae_contig12893:3931..41131691682914.4293554-CDS-L-elsbetiae_contig12893:3931..4113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12893 3932..4113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12893.2299.1

>prot_L-elsbetiae_contig12893.2299.1 ID=prot_L-elsbetiae_contig12893.2299.1|Name=mRNA_L-elsbetiae_contig12893.2299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=198bp
PVRLARNNIEGTLNLVECMQKQPGCRKLVFSSSATVYGDPDKLPLDESSS
VGVGITNPYGATKYMIEEILGDMAKADASWDILLLRYFNPIGAHESGKIG
EDPEGIPNNLMPFVAQVCVGRRDFLSVFGNDYGTPDGTGVRDYIHVMDLA
EGHVAAVKKLRESCTGCAAVNLGTGVGYSVMDVVKGMEDACGKPIPYE
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mRNA from alignment at L-elsbetiae_contig12893:12..4113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12893.2299.1 ID=mRNA_L-elsbetiae_contig12893.2299.1|Name=mRNA_L-elsbetiae_contig12893.2299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4102bp|location=Sequence derived from alignment at L-elsbetiae_contig12893:12..4113- (Laminarionema elsbetiae ELsaHSoW15)
CCCGTGCGATTGGCCAGAAACAACATCGAGGGGACTCTGAACCTTGTGGA
GTGCATGCAGAAGCAGCCGGGGTGCCGCAAGCTCGTCTTCTCCTCGTCGG
CGACGGTGTACGGCGACCCGGATAAGCTCCCGCTTGACGAGAGCAGCAGC
GTCGGCGTGGGCATCACCAACCCGTACGGTGCGTCCCAAGTGCTCAACCT
CACACAGCAGTAATCAGTCGGTCAATCACTCACACTTTTTTTTTTGCTTA
CATATCCCTTCGATTTGTTAACCTCACACAGCCGTAGTCAGTCCAGTCCG
TCAATCACTCACGCTTTTTTTTTGCTCACATATTCCTTCGATTTTTTAAC
TTCACACAGCTGTAGTCAGTCAGGCAGTCAGGCAGTCACACTTTTTTTTT
GTTTGTTTCCTCGATTTTTGGAAAATGTGTTCTCGTTTCAAGAAAGCCTC
GTCCGAGCGCTGTAAACGTGTGGGTGGGTATCTCATCCGTAAGGAAAACT
AAAAAAAAGTGCGCAAACAGAGTATGTATGTATTTCCACCCTTGAATGCG
TTTGTGGCGTGTCGAAGGGCGGATTTGACAAAGCACGGTTAAATACAAAT
CAGGGTTAAATACAAATCAAGGTCAAATACAAATCAGGGTTAAATACAAA
TCAAGGTTTAATACAAAGCAAGGTTTAATACGAATCAAGGTGTAAGTACA
AATCAAGGTTAAATACGAATCAAGGTTTAAGTACAAATCAAGGTTAAATA
CAAATCAGTGAATCAAAAATGGAACCTACAGTGTAGCCCACATGAGACCA
AGACTCAGTGGGTTTCAAACGGTATTCCCATTAAGTGACGTAATATTGGT
TCGGTAGAAGAGTAGAAAAACATCTAAAATATCCGAAAAATTCAACATGC
CCCTTGCAAGACTCAGCCAGGTCTCGACCAACATAAGTACACCGGGGAGA
AGCCGCCCTCCGTGATGACGTCATACTGCCATCTACTTCAAAGATATCTG
CATAGAAACACGTCGCATAGTGAAAATCCTGGTTTTAGTGTATATGGGTT
CCTGCGTTTTTTTTTTTTTTTTTTCCATTATGGCTTATTCGTCGTCTGCC
CCGCGGGCCTCCTTCCTCCACTACAACTAGCTAGACGACCCAACCGGGGT
CACACAGGAGGGGGGGGGGGGCTGGACCCCTCCTGCGGTGCTTTACCCTG
GAATGACTCCCGCGTGTCGGAGGAACAATCTTCTCGCCGAAAGAAAGACG
AAAGAAACACCCTGCTTCTGCTTGCTGCGGCTGTGTTTTTTTCGTAACCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCGGGTGCT
GTCTTATTTTTTTTTTTTTTTTTTTTTCTTNNNNNNNNNNAAGCCCGAAC
ACAACCCCTTGTTTTTGGTTTTTTTTTCTTTTTGTTTGCCGCCCCCCCCC
CCCCCCCCCCATCCAGTTTAGTACCGCCGGGCGCGTATGTATGTACCATA
TTTGTTTGCTTTTATTTTCCTTCCGCGGCGTCGAGTGTGTGCCTCGTTTT
GTGACCACGGGCCCCCAAGGATGTTTTGGACTAGAGAGCTAATGTGAGAA
ACAACAACACAACACACACGCGCGCGCGCGCCGCTCCGGCTCCGGCTCAC
TGTGCTCCGAAACACGGAATCCCCAGGGAGGACCAAGTACATGATCGAGG
AGATTCTTGGAGACATGGCGAAGGCGGATGCTTCGTGGGACATCCTGCTG
CTGCGGTATTTCAACCCCATCGGGGCGCACGAGAGCGGGAAAATAGGAGA
GGATCCCGAGGGCATCCCGAACAACCTTATGCCGTTCGTGGCTCAGGTAC
GTAGATGATCAGTGCTACCCGACCCGCCGTTTGCTTTTGCGATTGGTGAT
GTGCTGGTCGCATTAACACCTGTTCCTGGCCCTTTTGTGTAGGACGCTCT
CCTCTCAAGTGAAGGACGTTCGTTCGCTACATAAAACTTGTTGGTCGACC
TCGCAAATCTTTGCAGGGGAGATGTTGAACTCTTCTGATATTTTAGGTTG
TTTTTCCGCTCGCTTCGCCAAATATCACGTCACTGTATGGAATACCGTTT
GAACCCCATATCGAGTCCTTGCTCTGGGGTAGGTTCCATCTTTGATTCAT
TGTTTATTCTATAAAACAGTGATCTTGAAGTGTGCCAGTTGATGTAAAGA
CAACAACAGCAGCAGCAGCAAGCGCTGCCCTGGGTGCAAAACCGTTGTCT
CCGCAGAAGAGCAAGTTACGAAAACAATCCCCTCGCCCCCCAGAGAAACA
AGCTTTCCGGCATTGACCTATTGACCTGCCCTGCGCAGGTGTGCGTGGGG
AGGAGAGACTTCTTGAGCGTGTTCGGCAACGATTACGGAACCCCCGACGG
GACGGGGGTACGGGATTACATTCACGTCATGGACCTCGCCGAGGGTCACG
TGGCTGCCGTCAAGAAGGTGAGGAGCTACGGAGTAAAGGCGGTATGTATG
ATAAGCTTCTTGCGGCAGGGCCCCCAATTCTGCAAAAGTGGCTGTGGGGG
ATTCTTTGCTCTATTTCCTAGATATGTATACCCCCCCCCCCCCGCTGCCC
CCACAGCTGTTTTTGAGAATTGGGGGCTGGCTCTATTACAGGAAGCCTAT
GGGTGTGGCATGGTATGGTATGCAGAGCCGACTGCTATGAAGCTTGCCGA
GGATGGCGTTGTTACTGTTCCGAGAAAATGGTACGAAGGCATGGTGCGGT
CGGGCGCCGCTTTCACGGCCTACGTGGTGACGCGACCGATACCAGTGTTG
TTGGCGACGATTCCGCAGCACTTTTTCCGCGCCGTCTTTGTTCGACAAAG
CTTCAGCAATAGACCACCGTTTCTGTTGGTAGAGGTGAGAATAGAACCGT
GTATTGTAGTGTTGGTAGAGTACCCCAAGCCGAAAAATTCCGGTCGGGGG
GCGGTTGTGTCGGCCGGGGAGGAAAAATAGCGTTTTGGGATATAGGCTGG
AGACACGGAAGCATTTCAGGTAGGCGGGGCCCATCACCTATCAGCCCCGT
AAAAGTTTTTCACGTTTTGCCGGTCCACCACCTCACCTATGCTGCCTGTA
AAGCACGATATATACCCAAAGGAACACTGCTAGGATGTTTTGTTGTCGGT
TGTCTGACTTACATGTGCGCGTTCCAGCTGTGATAAAAAAGGCTCCCGTC
GAAACCTTGGTTGGTGCGGAGGGAGCGATTTCGGGGACAAGTTGTCATCG
CGGCCGGCCCTTGGGTCAGCAAGATAGCTTATCTTCTTGGCTATCCAAGG
CCCCAAGCATATCCAGGGCTTAACATCTACCGGCCGAGAAACTCGCGATG
CTGCAAACCCTCTTGTGACTTGTTGAATGTGTTGGCTGGGAGATTCACCG
ATGCCCCGCGTTGTGCTGGCTCTCTCTGTCTCTTTTTCACAGTCCTGTTA
TCTCTCTCTTTCACCAGGCGATGTAGTTGGGCACTCTGATATTTCGGGGA
CAATCGTCCTCTACGAGCGGAAGTTTGGCTTTTTAGCATCTCTGTTATCT
TAGCTACAGGATGTACGAAGAGGTCGCTGTCTTAATCTGCGATGGCAGAG
CTATCGTGGTGTTTGTCTGCCAGCTGCTCTGCCCGTATATATCCAAGTAG
TTTTGAACGGCTTCTCAAGGAGGCGCCAAAAACGTCATATTCCGCCGCGG
CATAAAAAAGGCCGCGGGGCCCCTCTCCCAATGATACTGATACCCCCTCT
TCGATAAATTCCACCCTCACCCCTACCCCCCCTTGTGGTCTAGCCCCCCC
CCCCCCCCTCTTGCGCTCTCGCGGCGGCATTCAGTTTCCGATCCCCCCCT
ATCTTTTCCCCGTACGACGATCGGCACGCAAACCAGTTTGCACGCCCCCC
CCCCCCCCCCCCCTCCTTACCCCTGCCGCTCTAAAAACTCTGATTTACCG
CCTTTCCCGCCAACATCGTGTACCCCGCCCGACAGTTGCGAGAATCGTGT
ACAGGGTGCGCGGCGGTGAACCTGGGCACTGGGGTGGGATACTCGGTGAT
GGACGTGGTGAAGGGCATGGAGGACGCTTGTGGGAAGCCCATCCCATATG
AG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12893:12..4113-

>mRNA_L-elsbetiae_contig12893.2299.1 ID=mRNA_L-elsbetiae_contig12893.2299.1|Name=mRNA_L-elsbetiae_contig12893.2299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1188bp|location=Sequence derived from alignment at L-elsbetiae_contig12893:12..4113- (Laminarionema elsbetiae ELsaHSoW15)
CCCGTGCGATTGGCCAGAAACAACATCGAGGGGACTCTGAACCTTGTGGA
GTGCATGCAGAAGCAGCCGGGGTGCCGCAAGCTCGTCTTCTCCTCGTCGG
CGACGGTGTACGGCGACCCGGATAAGCTCCCGCTTGACGAGAGCAGCAGC
GTCGGCGTGGGCATCACCAACCCGTACGGTGCCCCGTGCGATTGGCCAGA
AACAACATCGAGGGGACTCTGAACCTTGTGGAGTGCATGCAGAAGCAGCC
GGGGTGCCGCAAGCTCGTCTTCTCCTCGTCGGCGACGGTGTACGGCGACC
CGGATAAGCTCCCGCTTGACGAGAGCAGCAGCGTCGGCGTGGGCATCACC
AACCCGTACGGTGCGACCAAGTACATGATCGAGGAGATTCTTGGAGACAT
GGCGAAGGCGGATGCTTCGTGGGACATCCTGCTGCTGCGGTATTTCAACC
CCATCGGGGCGCACGAGAGCGGGAAAATAGGAGAGGATCCCGAGGGCATC
CCGAACAACCTTATGCCGTTCGTGGCTCAGGACCAAGTACATGATCGAGG
AGATTCTTGGAGACATGGCGAAGGCGGATGCTTCGTGGGACATCCTGCTG
CTGCGGTATTTCAACCCCATCGGGGCGCACGAGAGCGGGAAAATAGGAGA
GGATCCCGAGGGCATCCCGAACAACCTTATGCCGTTCGTGGCTCAGGTGT
GCGTGGGGAGGAGAGACTTCTTGAGCGTGTTCGGCAACGATTACGGAACC
CCCGACGGGACGGGGGTACGGGATTACATTCACGTCATGGACCTCGCCGA
GGGTCACGTGGCTGCCGTCAAGAAGGTGTGCGTGGGGAGGAGAGACTTCT
TGAGCGTGTTCGGCAACGATTACGGAACCCCCGACGGGACGGGGGTACGG
GATTACATTCACGTCATGGACCTCGCCGAGGGTCACGTGGCTGCCGTCAA
GAAGTTGCGAGAATCGTGTACAGGGTGCGCGGCGGTGAACCTGGGCACTG
GGGTGGGATACTCGGTGATGGACGTGGTGAAGGGCATGGAGGACGCTTGT
GGGAAGCCCATCCCATATGAGTTGCGAGAATCGTGTACAGGGTGCGCGGC
GGTGAACCTGGGCACTGGGGTGGGATACTCGGTGATGGACGTGGTGAAGG
GCATGGAGGACGCTTGTGGGAAGCCCATCCCATATGAG
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