mRNA_L-elsbetiae_contig12891.2298.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12891.2298.1
Unique NamemRNA_L-elsbetiae_contig12891.2298.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12891.2298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12891contigL-elsbetiae_contig12891:3999..4564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size517
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12891.2298.1prot_L-elsbetiae_contig12891.2298.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12891 4032..4500 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815472.6393752-UTR-L-elsbetiae_contig12891:3998..40311622815472.6393752-UTR-L-elsbetiae_contig12891:3998..4031Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12891 3999..4031 +
1691682914.352112-UTR-L-elsbetiae_contig12891:3998..40311691682914.352112-UTR-L-elsbetiae_contig12891:3998..4031Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12891 3999..4031 +
1622815472.678197-UTR-L-elsbetiae_contig12891:4500..45641622815472.678197-UTR-L-elsbetiae_contig12891:4500..4564Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12891 4501..4564 +
1691682914.3831253-UTR-L-elsbetiae_contig12891:4500..45641691682914.3831253-UTR-L-elsbetiae_contig12891:4500..4564Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12891 4501..4564 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815472.6522386-CDS-L-elsbetiae_contig12891:4031..42161622815472.6522386-CDS-L-elsbetiae_contig12891:4031..4216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12891 4032..4216 +
1691682914.3625987-CDS-L-elsbetiae_contig12891:4031..42161691682914.3625987-CDS-L-elsbetiae_contig12891:4031..4216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12891 4032..4216 +
1622815472.6671965-CDS-L-elsbetiae_contig12891:4265..45001622815472.6671965-CDS-L-elsbetiae_contig12891:4265..4500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12891 4266..4500 +
1691682914.3745549-CDS-L-elsbetiae_contig12891:4265..45001691682914.3745549-CDS-L-elsbetiae_contig12891:4265..4500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12891 4266..4500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12891.2298.1

>prot_L-elsbetiae_contig12891.2298.1 ID=prot_L-elsbetiae_contig12891.2298.1|Name=mRNA_L-elsbetiae_contig12891.2298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
MGKRVRGLEGAVRDRPCADGTVTVQTTKALVLPSTDAGGNGSGGGEVVRA
VGVGFGPEGRLHSSSSSSTKKMVRRGCFDRIRLLPPPLSLLGKARSRRRF
HQGPPQGYNGQLLWRSRLRSKCSQCRSGSASSSCSNSGQ*
back to top

mRNA from alignment at L-elsbetiae_contig12891:3999..4564+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12891.2298.1 ID=mRNA_L-elsbetiae_contig12891.2298.1|Name=mRNA_L-elsbetiae_contig12891.2298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=566bp|location=Sequence derived from alignment at L-elsbetiae_contig12891:3999..4564+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCAGCAGCGGAGTAGCACTTGTAGCAGATCGATGGGGAAGCGTGTCCG
AGGGCTGGAAGGGGCGGTGAGGGACCGGCCCTGTGCTGACGGGACTGTCA
CCGTTCAGACCACAAAGGCATTGGTGCTGCCTTCCACGGATGCCGGCGGC
AATGGTAGCGGCGGCGGCGAAGTCGTACGCGCAGTGGGCGTTGGTTTTGG
CCCTGAGGGTCGGCTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAAGAAGATGGT
TCGGCGGGGCTGTTTCGATCGCATTCGGCTCCTTCCTCCTCCTCTTTCTC
TCCTTGGGAAGGCACGTTCCCGGCGCCGCTTCCACCAGGGCCCGCCGCAG
GGCTACAACGGTCAGCTTCTTTGGAGAAGTCGACTTCGCAGCAAATGCAG
CCAATGCCGCAGTGGCAGCGCCAGCAGCAGCTGCAGCAACAGCGGACAGT
AGTGACGCCGGACCGCGGGGCGACATCACCCCCCCCGGGGGTTGTCGTCG
GGGGGGTGCTTGGCGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12891:3999..4564+

>mRNA_L-elsbetiae_contig12891.2298.1 ID=mRNA_L-elsbetiae_contig12891.2298.1|Name=mRNA_L-elsbetiae_contig12891.2298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig12891:3999..4564+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGAAGCGTGTCCGAGGGCTGGAAGGGGCGGTGAGGGACCGGCCCTG
TGCTGACGGGACTGTCACCGTTCAGACCACAAAGGCATTGGTGCTGCCTT
CCACGGATGCCGGCGGCAATGGTAGCGGCGGCGGCGAAGTCGTACGCGCA
GTGGGCGTTGGTTTTGGCCCTGAGGGTCGGCTACAATGGGGAAGCGTGTC
CGAGGGCTGGAAGGGGCGGTGAGGGACCGGCCCTGTGCTGACGGGACTGT
CACCGTTCAGACCACAAAGGCATTGGTGCTGCCTTCCACGGATGCCGGCG
GCAATGGTAGCGGCGGCGGCGAAGTCGTACGCGCAGTGGGCGTTGGTTTT
GGCCCTGAGGGTCGGCTACACAGCAGCAGCAGCAGCAGCACCAAGAAGAT
GGTTCGGCGGGGCTGTTTCGATCGCATTCGGCTCCTTCCTCCTCCTCTTT
CTCTCCTTGGGAAGGCACGTTCCCGGCGCCGCTTCCACCAGGGCCCGCCG
CAGGGCTACAACGGTCAGCTTCTTTGGAGAAGTCGACTTCGCAGCAAATG
CAGCCAATGCCGCAGTGGCAGCGCCAGCAGCAGCTGCAGCAACAGCGGAC
AGTAGCAGCAGCAGCAGCAGCAGCACCAAGAAGATGGTTCGGCGGGGCTG
TTTCGATCGCATTCGGCTCCTTCCTCCTCCTCTTTCTCTCCTTGGGAAGG
CACGTTCCCGGCGCCGCTTCCACCAGGGCCCGCCGCAGGGCTACAACGGT
CAGCTTCTTTGGAGAAGTCGACTTCGCAGCAAATGCAGCCAATGCCGCAG
TGGCAGCGCCAGCAGCAGCTGCAGCAACAGCGGACAGTAG
back to top