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Homology
BLAST of mRNA_L-elsbetiae_contig12880.2293.1 vs. uniprot
Match: D8LKX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX3_ECTSI) HSP 1 Score: 253 bits (645), Expect = 1.400e-82 Identity = 131/185 (70.81%), Postives = 151/185 (81.62%), Query Frame = 1
Query: 4 FSADEGGRLPLLASVYLSAPLSLADLFGAITFMVKRAEVLRLDLQHEETHGGRPRPGPPSPIXXXXXXQSLTDSFRRLYDTFLLLALAFSVLEALMFRLGRRRIAANAERWRRSRGIGXXXXXXXXFLSTGALESLLDEEDVKRAGWEDWRGETVEQSLLMEQRYEQLRRTNIEKNEGLLEHTRG 558
FSADEGGRLPLL +VYLSAPLSLADL +TF+VKR+EVLRLDL+HE++ GGRP PGPPSP+ +S DSFRRLYD FL +ALAFSVLEALMFRLG RRIAANAER RR++G G + +ESLLDEEDV+R GWEDWRG+TV+Q L+MEQRYEQLRR+N+EKNEGLLEHTRG
Sbjct: 39 FSADEGGRLPLLGAVYLSAPLSLADLIAGVTFIVKRSEVLRLDLEHEQSRGGRPHPGPPSPVPGGDDPESQADSFRRLYDAFLCMALAFSVLEALMFRLGSRRIAANAERHRRAQGFGES------LVYGSGMESLLDEEDVRRNGWEDWRGDTVQQGLMMEQRYEQLRRSNLEKNEGLLEHTRG 217
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-11_005900.1 |
| Exons | 3 |
| Model size | 576 |
| Cds size | 576 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815472.148349-CDS-L-elsbetiae_contig12880:103..205 | 1622815472.148349-CDS-L-elsbetiae_contig12880:103..205 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12880 104..205 - |
| 1691682913.989908-CDS-L-elsbetiae_contig12880:103..205 | 1691682913.989908-CDS-L-elsbetiae_contig12880:103..205 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12880 104..205 - |
| 1622815472.1596925-CDS-L-elsbetiae_contig12880:1283..1640 | 1622815472.1596925-CDS-L-elsbetiae_contig12880:1283..1640 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12880 1284..1640 - |
| 1691682914.0078633-CDS-L-elsbetiae_contig12880:1283..1640 | 1691682914.0078633-CDS-L-elsbetiae_contig12880:1283..1640 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12880 1284..1640 - |
| 1622815472.1770318-CDS-L-elsbetiae_contig12880:2487..2604 | 1622815472.1770318-CDS-L-elsbetiae_contig12880:2487..2604 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12880 2488..2604 - |
| 1691682914.0191185-CDS-L-elsbetiae_contig12880:2487..2604 | 1691682914.0191185-CDS-L-elsbetiae_contig12880:2487..2604 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12880 2488..2604 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12880.2293.1 >prot_L-elsbetiae_contig12880.2293.1 ID=prot_L-elsbetiae_contig12880.2293.1|Name=mRNA_L-elsbetiae_contig12880.2293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=192bp
QFSADEGGRLPLLASVYLSAPLSLADLFGAITFMVKRAEVLRLDLQHEET
HGGRPRPGPPSPIPAPESPQSLTDSFRRLYDTFLLLALAFSVLEALMFRL
GRRRIAANAERWRRSRGIGGGGGGGGGFLSTGALESLLDEEDVKRAGWED
WRGETVEQSLLMEQRYEQLRRTNIEKNEGLLEHTRGGNNSL* back to topmRNA from alignment at L-elsbetiae_contig12880:104..2604- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig12880.2293.1 ID=mRNA_L-elsbetiae_contig12880.2293.1|Name=mRNA_L-elsbetiae_contig12880.2293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2501bp|location=Sequence derived from alignment at L-elsbetiae_contig12880:104..2604- (Laminarionema elsbetiae ELsaHSoW15)
CAGTTTTCCGCGGATGAAGGGGGACGGCTTCCTCTTCTGGCTTCGGTGTA
CCTTTCTGCTCCCCTGTCCTTGGCGGATCTGTTCGGGGCCATCACCTTCA
TGGTCAAGCGGGCAGAGGTGAGCGACTTGGCCCACATTTCGCAGTCCACA
CACGGGGCACACGTATGTATGTATGTGCGTATTTGTGTATCTAAATAGAC
AACATACAATACATGTATAGATATATCTTTTTTAGGTAAACGTTAGCCTG
TGACCACACGGGAATTGACCGCATCAAGTGTTGGAATAGTACGCCCATAT
GTAGGGAGATACTGGGTGGAGAGATCGGAACGGTTTATAATGTGAGAAAC
AACAACTATTTGTAGTGTGAAGAAACAATAACAACAACAACAACAACAAC
AACTAACGTTACATACCAGTTGATCTTCGGGCGTATGTATACATACATCT
ACATACACGCGGGACACGGCCTCACCGCTGTAGTTGATTGGCCTCGGGTC
GGGAGCGGACCCCGGCGAGAGGAAAAGACGAAGAAAAAAACGGGCAATGG
CTGGCGCCTACCATGACGCGACTCTCGGATAAGGAGGCGGCGCCAAAAAA
GAGACATTAGACTGCTGCGGGACACGATCCCCAAAGCAGTGAGTGAGTGC
CGCGTTCTTTTAGTGGTGCTCCCATCTACGAAGCGCGCGCAACTGCGGCA
CCCCCAGTCCCCCATGAAATCAGCTTCAAACGGCACTGCTGCTGGCTTGT
TTTCTGTGTGCCGGTTTCCGACCTTGGTGAACACAAAACCGCTGCCGCCC
GAGCAAGAAGAGTGCGCGTGCTGCCCTCCCTCCCTCCCTCCTCCCTCGTG
GTATTATTCACGGGGTCCCTAAACACTACTACCCACCCCCCCCCCTGCCT
TCTGCGTCCGCGGAACACGCACGGAACCCCTTTGACACACACACGGCACG
AAAAAAAATGGCAGGTGCTTCGCCTGGACCTGCAGCACGAAGAGACCCAC
GGAGGCAGACCCCGGCCGGGGCCACCGAGCCCCATCCCCGCCCCGGAGTC
ACCCCAGTCCCTGACCGACTCTTTCCGACGCCTGTACGACACCTTTCTCC
TCCTGGCCCTGGCCTTTTCCGTGCTGGAGGCGCTCATGTTCAGGCTCGGC
CGCCGGCGCATCGCGGCCAACGCGGAGCGGTGGCGTCGTTCTCGCGGGAT
CGGGGGCGGCGGCGGCGGCGGCGGAGGCTTTCTGTCGACGGGTGCGCTGG
AGTCGCTGCTCGACGAGGAGGACGTGAAAAGGGCGGGGTGGGAGGACTGG
CGCGGAGAGACCGTTGAGCAGGTGGGCTGGGGCGTGTGGGCGTGGGTGCA
TTTGGTGGTGGTGGTGTTGGTATTGTTGGTGTTGTGCGTGTGTGTGTCGG
TGTGGGTGTGGGTGTGGGTGAGGGTGTAAGTTTGCGTGGCACGCGCGATG
GTGCGCACGCTGCTTACATTGATGATTTTTTTTTTTTTTAGCGGGAGGAG
GGGGGGGGACTTTTTTCGTGTTGTGTCGTCGGTTTTGAAAAATAGTGCAT
TATTCTGTCGCGCGTGTTGATTGATACATAGCTGACTTGGCCTTCTAGGA
GGTTTCGTCTGTAGATATATGCATGCACGTCGAGAAAAAGTAGACAAAAA
GTATTTACTATCCAAAGTTGCTCGGATTCTCGTCTTCCGATGAAGCATTA
CATAGTGCAATAAAAAACGCGGGTACGTACATATCCAACTAAATAAAAAA
AAGGGGTTCGCGGCCCTACATGCCATCGAAACATCGAAACCCCGCCTCTC
CAGATTACTTCCGCTCCTCGCCTCCCTGAATGCCTTCCTCTCTGTTCCTC
GCTCCTCTTCATTCCTTTGGTACCCGCGTATCGTACCCGGCCTTGTTCTA
CGCGTCTTTTTATGTGTACCTACCATACACGATAAGATTCCTGCAGCAGC
CCCCCCCCCAATTCTGAAGAAGTGGCTTTGGGAGATTTTTCACTCCATAT
CATGGATTACGGTAGGTGACACAATATACCACACCCCTTGGACAGATTTC
CAAAGCTCAAGTATTCCACAGCAAGAAGAGTGCCAGTGCCGAAAGGGGTG
GCGTTGGAAAGATCTAGTCCAGGGCTGTCCGAAAATGTGCCGTTTGTTGC
CGGCACCCTCTTCGCTACGGAGTAATGGAGCTCTAAAAGTCGGTCCAGGG
GGTGTGGTATCTTGTGTCACCTACGGTAATACCCCCCCTCCCCGCTGCCC
CCGCAGCTCTTTTTGAGAATTGGGGGGGCCCTGTTGCAGGAAGCCTATGA
TGCGTGGGGGGTGTATCTTGACGACGACGCCCCGTGATGTATTTTCGCTC
CCTCGGCTGACTCCTTGTGTAAACGGTGTCGTCCCGCCGGGGCTCGCAGA
GCCTGCTGATGGAGCAGAGATACGAGCAGCTGCGGAGGACCAACATTGAG
AAGAACGAGGGGCTGCTGGAGCACACCAGGGGGGGCAATAACAGCTTGTA
G back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig12880:104..2604- >mRNA_L-elsbetiae_contig12880.2293.1 ID=mRNA_L-elsbetiae_contig12880.2293.1|Name=mRNA_L-elsbetiae_contig12880.2293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1152bp|location=Sequence derived from alignment at L-elsbetiae_contig12880:104..2604- (Laminarionema elsbetiae ELsaHSoW15)
CAGTTTTCCGCGGATGAAGGGGGACGGCTTCCTCTTCTGGCTTCGGTGTA
CCTTTCTGCTCCCCTGTCCTTGGCGGATCTGTTCGGGGCCATCACCTTCA
TGGTCAAGCGGGCAGAGCAGTTTTCCGCGGATGAAGGGGGACGGCTTCCT
CTTCTGGCTTCGGTGTACCTTTCTGCTCCCCTGTCCTTGGCGGATCTGTT
CGGGGCCATCACCTTCATGGTCAAGCGGGCAGAGGTGCTTCGCCTGGACC
TGCAGCACGAAGAGACCCACGGAGGCAGACCCCGGCCGGGGCCACCGAGC
CCCATCCCCGCCCCGGAGTCACCCCAGTCCCTGACCGACTCTTTCCGACG
CCTGTACGACACCTTTCTCCTCCTGGCCCTGGCCTTTTCCGTGCTGGAGG
CGCTCATGTTCAGGCTCGGCCGCCGGCGCATCGCGGCCAACGCGGAGCGG
TGGCGTCGTTCTCGCGGGATCGGGGGCGGCGGCGGCGGCGGCGGAGGCTT
TCTGTCGACGGGTGCGCTGGAGTCGCTGCTCGACGAGGAGGACGTGAAAA
GGGCGGGGTGGGAGGACTGGCGCGGAGAGACCGTTGAGCAGGTGCTTCGC
CTGGACCTGCAGCACGAAGAGACCCACGGAGGCAGACCCCGGCCGGGGCC
ACCGAGCCCCATCCCCGCCCCGGAGTCACCCCAGTCCCTGACCGACTCTT
TCCGACGCCTGTACGACACCTTTCTCCTCCTGGCCCTGGCCTTTTCCGTG
CTGGAGGCGCTCATGTTCAGGCTCGGCCGCCGGCGCATCGCGGCCAACGC
GGAGCGGTGGCGTCGTTCTCGCGGGATCGGGGGCGGCGGCGGCGGCGGCG
GAGGCTTTCTGTCGACGGGTGCGCTGGAGTCGCTGCTCGACGAGGAGGAC
GTGAAAAGGGCGGGGTGGGAGGACTGGCGCGGAGAGACCGTTGAGCAGAG
CCTGCTGATGGAGCAGAGATACGAGCAGCTGCGGAGGACCAACATTGAGA
AGAACGAGGGGCTGCTGGAGCACACCAGGGGGGGCAATAACAGCTTGTAG
AGCCTGCTGATGGAGCAGAGATACGAGCAGCTGCGGAGGACCAACATTGA
GAAGAACGAGGGGCTGCTGGAGCACACCAGGGGGGGCAATAACAGCTTGT
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