mRNA_L-elsbetiae_contig12878.2291.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12878.2291.1
Unique NamemRNA_L-elsbetiae_contig12878.2291.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12878.2291.1 vs. uniprot
Match: A0A6H5KYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.450e-14
Identity = 50/103 (48.54%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   52 PPHPGTTTSRGGLSIAPSDEFLIVARAKDAAKREAEAAGGDKRPRLPSRRALEASGVLTDAVLQRVIREKEENQTRAAALTKARRKDAKAKGLKYGTALEVVV 360
            PP P   TSR    +APS E LI+ +A++AAK EAEA+G  +RPR PSRRALEASG L     Q + REK+  Q R  +  + +RK+++  GLK G  LE  V
Sbjct:  364 PPQP---TSRPSDGMAPSVEMLILRQAREAAKTEAEASGSGRRPRAPSRRALEASGRLRGDGAQWMTREKKAEQARVNSELRKKRKESREAGLKVGVVLEAFV 463          
BLAST of mRNA_L-elsbetiae_contig12878.2291.1 vs. uniprot
Match: A0A6H5KLI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI4_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 7.330e-14
Identity = 50/103 (48.54%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   52 PPHPGTTTSRGGLSIAPSDEFLIVARAKDAAKREAEAAGGDKRPRLPSRRALEASGVLTDAVLQRVIREKEENQTRAAALTKARRKDAKAKGLKYGTALEVVV 360
            PP P   TSR    +APS E LI+ +A++AAK EAEA+G  +RPR PSRRALEASG L     Q + REK+  Q R  +  + +RK+++  GLK G  LE  V
Sbjct:  418 PPQP---TSRPSDGMAPSVEMLILRQAREAAKTEAEASGSGRRPRAPSRRALEASGRLRGDGAQWMTREKKAEQARVNSELRKKRKESREAGLKVGVVLEAFV 517          
BLAST of mRNA_L-elsbetiae_contig12878.2291.1 vs. uniprot
Match: D8LH07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH07_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.610e-13
Identity = 50/103 (48.54%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   52 PPHPGTTTSRGGLSIAPSDEFLIVARAKDAAKREAEAAGGDKRPRLPSRRALEASGVLTDAVLQRVIREKEENQTRAAALTKARRKDAKAKGLKYGTALEVVV 360
            PP P   TSR    +APS E LI+ +A++AAK EAEA+GG +R R PSRRALEASG L     Q + REK+  Q R     + +RK ++  GLK G  LE  V
Sbjct:  264 PPQP---TSRPSEGMAPSVEMLILRQAREAAKTEAEASGGGRRARAPSRRALEASGQLKGDGAQWMTREKKAEQARVNTELREKRKKSREAGLKVGVVLEAFV 363          
BLAST of mRNA_L-elsbetiae_contig12878.2291.1 vs. uniprot
Match: D8LGW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGW8_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.420e-12
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 1
Query:   49 LPPHPGTTTSRGGLSIAPSDEFLIVARAKDAAKREAEAAGGDKRPRLPSRRALEASGVLTDAVLQRVIREKEENQTRAAALTKARRKDAKAKGLKYGTALEVVV 360
            LPP P    S G   ++PS E LI+ +A++AAK+EAEA+GG +R R PSRRALEASG L     Q + REK   Q R     + +RK ++  GL  G  LE  V
Sbjct:  363 LPPQPTNRPSEG---MSPSVEMLILRQAREAAKKEAEASGGGRRARAPSRRALEASGRLRGDGAQWMTREKRAEQARVNTELREKRKKSREAGLTVGVVLEAFV 463          
BLAST of mRNA_L-elsbetiae_contig12878.2291.1 vs. uniprot
Match: D7G0V0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V0_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 4.200e-12
Identity = 48/112 (42.86%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   25 SPRPLRSCLPPHPGTTTSRGGLSIAPSDEFLIVARAKDAAKREAEAAGGDKRPRLPSRRALEASGVLTDAVLQRVIREKEENQTRAAALTKARRKDAKAKGLKYGTALEVVV 360
            SP P     PP            +APS EFL++ +A++ AK EAEA+G  +RPR PSRRALEA+G L     Q + REK+    R  A  + +RK  +A GLK G  LE+ V
Sbjct:  198 SPAPAAEANPPSSPNNRLADSSGMAPSVEFLVLRQAREDAKTEAEASGLGRRPRAPSRRALEAAGRLKGTGAQWMSREKKAEDLRLKAELRQQRKQYQAAGLKSGVVLEMFV 309          
BLAST of mRNA_L-elsbetiae_contig12878.2291.1 vs. uniprot
Match: A0A6H5L360_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L360_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 7.320e-12
Identity = 50/120 (41.67%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    7 RSGLSRSPRPLRSCLPPHPGTTTSR--GGLSIAPSDEFLIVARAKDAAKREAEAAGGDKRPRLPSRRALEASGVLTDAVLQRVIREKEENQTRAAALTKARRKDAKAKGLKYGTALEVVV 360
            ++  S  P P  +  P  P ++ +R      +APS EFL++ +A++AAK EAEA+G  +RPR PSRRALEA+G L     Q + REK+    R  A  + +RK  +A GLK G  LE+ V
Sbjct:  429 KTSASSLPPPAPAFEPNPPSSSNNRLADSSGMAPSVEFLVLRQAREAAKTEAEASGLGRRPRAPSRRALEAAGRLKGIGAQWMSREKKAEDLRLKAELRLQRKQYQAAGLKSGVVLEMFV 548          
BLAST of mRNA_L-elsbetiae_contig12878.2291.1 vs. uniprot
Match: D8LEM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM4_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.510e-11
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   94 IAPSDEFLIVARAKDAAKREAEAAGGDKRPRLPSRRALEASGVLTDAVLQRVIREKEENQTRAAALTKARRKDAKAKGLKYGTALEVVV 360
            +APS EF ++ +A++ AK+EA A+GG +RPR PSRRALEASG L     Q + RE++  + R  A  + +R+  KA GLK G  LE  V
Sbjct:  179 MAPSVEFHLLRQAREVAKKEAAASGGGRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARFKAELREQRRQYKAAGLKSGVVLEAFV 267          
BLAST of mRNA_L-elsbetiae_contig12878.2291.1 vs. uniprot
Match: A0A6H5LLY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLY6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.610e-11
Identity = 48/112 (42.86%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   25 SPRPLRSCLPPHPGTTTSRGGLSIAPSDEFLIVARAKDAAKREAEAAGGDKRPRLPSRRALEASGVLTDAVLQRVIREKEENQTRAAALTKARRKDAKAKGLKYGTALEVVV 360
            SP P     PP            +APS EFL++ +A++ AK EAEA+G  +RPR PSRRALEA+G L     Q + REK+    R  A  + +RK  +A GLK G  LE+ V
Sbjct:  436 SPAPAAEPKPPSFPNNRLADSSGMAPSVEFLVLRQAREDAKTEAEASGLGRRPRAPSRRALEAAGRLKGTGAQWMSREKKAEDLRLKAELRLQRKRYQAAGLKSGVVLEMFV 547          
BLAST of mRNA_L-elsbetiae_contig12878.2291.1 vs. uniprot
Match: A0A6H5L640_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L640_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 9.830e-11
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   94 IAPSDEFLIVARAKDAAKREAEAAGGDKRPRLPSRRALEASGVLTDAVLQRVIREKEENQTRAAALTKARRKDAKAKGLKYGTALEVVV 360
            +APS EF ++ +A++AAK+EA  +GG +RPR PSRRALEASG L     Q + RE++  + R  A  + +R+  KA G K G  LE  V
Sbjct:  129 MAPSVEFHLLRQAREAAKKEAAXSGGGRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARIKAELREQRRQYKAAGFKSGVVLEAFV 217          
BLAST of mRNA_L-elsbetiae_contig12878.2291.1 vs. uniprot
Match: A0A6H5JZL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL0_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 7.130e-10
Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   52 PPHPGTTTSRGGLSIAPSDEFLIVARAKDAAKREAEAAGGDKRPRLPSRRALEASGVLTDAVLQRVIREKEENQTR 279
            PP P   TSR    +APS E LI+ +A++AAK EAEA+GG +RPR PSRRALEASG L     Q   REK+  Q R
Sbjct:  100 PPQP---TSRPSEGMAPSVEMLILRQAREAAKTEAEASGGGRRPRAPSRRALEASGRLRGDGAQWKTREKKPGQAR 172          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12878.2291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KYF0_9PHAE6.450e-1448.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLI4_9PHAE7.330e-1448.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH07_ECTSI1.610e-1348.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGW8_ECTSI1.420e-1246.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0V0_ECTSI4.200e-1242.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L360_9PHAE7.320e-1241.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEM4_ECTSI3.510e-1147.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LLY6_9PHAE4.610e-1142.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L640_9PHAE9.830e-1146.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZL0_9PHAE7.130e-1055.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12878contigL-elsbetiae_contig12878:4098..4638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size541
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815471.8448071-CDS-L-elsbetiae_contig12878:4097..44631622815471.8448071-CDS-L-elsbetiae_contig12878:4097..4463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12878 4098..4463 +
1691682913.7677088-CDS-L-elsbetiae_contig12878:4097..44631691682913.7677088-CDS-L-elsbetiae_contig12878:4097..4463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12878 4098..4463 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815471.8561873-UTR-L-elsbetiae_contig12878:4463..46381622815471.8561873-UTR-L-elsbetiae_contig12878:4463..4638Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12878 4464..4638 +
1691682913.7787483-UTR-L-elsbetiae_contig12878:4463..46381691682913.7787483-UTR-L-elsbetiae_contig12878:4463..4638Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12878 4464..4638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12878.2291.1prot_L-elsbetiae_contig12878.2291.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12878 4098..4463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12878.2291.1

>prot_L-elsbetiae_contig12878.2291.1 ID=prot_L-elsbetiae_contig12878.2291.1|Name=mRNA_L-elsbetiae_contig12878.2291.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
NRRSGLSRSPRPLRSCLPPHPGTTTSRGGLSIAPSDEFLIVARAKDAAKR
EAEAAGGDKRPRLPSRRALEASGVLTDAVLQRVIREKEENQTRAAALTKA
RRKDAKAKGLKYGTALEVVVG*
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mRNA from alignment at L-elsbetiae_contig12878:4098..4638+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12878.2291.1 ID=mRNA_L-elsbetiae_contig12878.2291.1|Name=mRNA_L-elsbetiae_contig12878.2291.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=541bp|location=Sequence derived from alignment at L-elsbetiae_contig12878:4098..4638+ (Laminarionema elsbetiae ELsaHSoW15)
AACAGGCGTTCGGGGCTATCGAGGAGCCCCCGTCCTCTCCGGAGCTGCCT CCCCCCGCATCCCGGCACGACCACCTCGCGAGGCGGGTTATCGATAGCTC CATCGGACGAATTCCTCATCGTAGCGCGGGCGAAGGACGCGGCGAAGCGG GAGGCCGAAGCGGCCGGCGGTGACAAGCGCCCACGCCTTCCATCCCGCCG CGCCCTGGAGGCTTCGGGAGTGCTGACGGACGCTGTGTTGCAGCGCGTGA TCCGAGAGAAGGAAGAGAACCAAACCCGTGCAGCCGCCCTAACCAAGGCG CGGAGGAAAGACGCCAAGGCTAAGGGGCTGAAATATGGAACGGCGCTGGA GGTTGTCGTCGGGTAGAGTCGTTACTCGTACACACAGAGAGAGAGAGAGA GAGATACTGAAGCGAAGAGATGGTGGGTGTGAAGGCCTGACAGTAAACGA CTGCGTGGGAAATGATGAATACGTAACCTCAAGGAGCTGCTAGGCCGTGC CTCATTTTTTTTCAATTATTTTCATGATGTTGGTGGTGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12878:4098..4638+

>mRNA_L-elsbetiae_contig12878.2291.1 ID=mRNA_L-elsbetiae_contig12878.2291.1|Name=mRNA_L-elsbetiae_contig12878.2291.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig12878:4098..4638+ (Laminarionema elsbetiae ELsaHSoW15)
AACAGGCGTTCGGGGCTATCGAGGAGCCCCCGTCCTCTCCGGAGCTGCCT
CCCCCCGCATCCCGGCACGACCACCTCGCGAGGCGGGTTATCGATAGCTC
CATCGGACGAATTCCTCATCGTAGCGCGGGCGAAGGACGCGGCGAAGCGG
GAGGCCGAAGCGGCCGGCGGTGACAAGCGCCCACGCCTTCCATCCCGCCG
CGCCCTGGAGGCTTCGGGAGTGCTGACGGACGCTGTGTTGCAGCGCGTGA
TCCGAGAGAAGGAAGAGAACCAAACCCGTGCAGCCGCCCTAACCAAGGCG
CGGAGGAAAGACGCCAAGGCTAAGGGGCTGAAATATGGAACGGCGCTGGA
GGTTGTCGTCGGGTAGAACAGGCGTTCGGGGCTATCGAGGAGCCCCCGTC
CTCTCCGGAGCTGCCTCCCCCCGCATCCCGGCACGACCACCTCGCGAGGC
GGGTTATCGATAGCTCCATCGGACGAATTCCTCATCGTAGCGCGGGCGAA
GGACGCGGCGAAGCGGGAGGCCGAAGCGGCCGGCGGTGACAAGCGCCCAC
GCCTTCCATCCCGCCGCGCCCTGGAGGCTTCGGGAGTGCTGACGGACGCT
GTGTTGCAGCGCGTGATCCGAGAGAAGGAAGAGAACCAAACCCGTGCAGC
CGCCCTAACCAAGGCGCGGAGGAAAGACGCCAAGGCTAAGGGGCTGAAAT
ATGGAACGGCGCTGGAGGTTGTCGTCGGGTAG
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