mRNA_L-elsbetiae_contig12878.2290.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12878.2290.1
Unique NamemRNA_L-elsbetiae_contig12878.2290.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12878.2290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12878contigL-elsbetiae_contig12878:1160..2279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size257
Cds size240
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12878.2290.1prot_L-elsbetiae_contig12878.2290.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12878 1175..2279 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815471.7678413-UTR-L-elsbetiae_contig12878:1159..11741622815471.7678413-UTR-L-elsbetiae_contig12878:1159..1174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12878 1160..1174 -
1691682913.7359343-UTR-L-elsbetiae_contig12878:1159..11741691682913.7359343-UTR-L-elsbetiae_contig12878:1159..1174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12878 1160..1174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815471.7817307-CDS-L-elsbetiae_contig12878:1174..13471622815471.7817307-CDS-L-elsbetiae_contig12878:1174..1347Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12878 1175..1347 -
1691682913.7470808-CDS-L-elsbetiae_contig12878:1174..13471691682913.7470808-CDS-L-elsbetiae_contig12878:1174..1347Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12878 1175..1347 -
1622815471.8006508-CDS-L-elsbetiae_contig12878:2212..22791622815471.8006508-CDS-L-elsbetiae_contig12878:2212..2279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12878 2213..2279 -
1691682913.7574136-CDS-L-elsbetiae_contig12878:2212..22791691682913.7574136-CDS-L-elsbetiae_contig12878:2212..2279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12878 2213..2279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12878.2290.1

>prot_L-elsbetiae_contig12878.2290.1 ID=prot_L-elsbetiae_contig12878.2290.1|Name=mRNA_L-elsbetiae_contig12878.2290.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
PAWHGFRLAGGCCRGGLFLLAVGAVMADAIAMRVYLYSEQGISRGEHVVS
QQVGVERLPAVLVGRFSSPCRSWAGQRSS*
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mRNA from alignment at L-elsbetiae_contig12878:1160..2279-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12878.2290.1 ID=mRNA_L-elsbetiae_contig12878.2290.1|Name=mRNA_L-elsbetiae_contig12878.2290.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1120bp|location=Sequence derived from alignment at L-elsbetiae_contig12878:1160..2279- (Laminarionema elsbetiae ELsaHSoW15)
CCAGCATGGCACGGCTTTCGTCTGGCAGGCGGGTGCTGCCGCGGGGGCCT
CTTCCTGCTGGCTGTTGGTGAGTCGGTTGCGCGGTCGGGGCAAAGGTAAA
GTTGTAGGCTCTCTGGAAGGGCAAATCCTCGCAACTCGGCAACCTCACCC
CATGCTCCCCCGCTCTGCAGAAGTAGCAGCAGTAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGAAGTAGTAGCA
GCCGAAGAAGCAACTTAGCAGCATTCGAAGTAGCAGCAGCGGCGGCAGCC
GCAGCAGCAGGGTGGTTCGTTGATTCCTTGCCCCGCTCCCTTCTGGGGTG
CCGCCCGGAGGATGTTGCATCGCATCTGCTGCTATGCTCACTGCTGCTGC
TATGCTCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAATTG
CCACCAAACACGTCTAGATGCACATACCTAGATCTATTCTCTCGAGACAG
CAGCTATGCAGGAGCACCGAAGCAGAGCAGCAGAGCAGGCCCGTCGCACA
GCAGTGTACCCACCCCGCACCAGTCAACGGGTGTAGCTACTCTCGTGAGA
GTATGTATTAGTTGTTGCTGCTGCCTGCGTTTTCAACGAAGGTTAAGGTT
TCAAGAGCTAGCTGGCCGTAGTAACGGCAGCGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCATGTAGAAGTAAACAG
AGATAGATGCGCTTACGAGGGGAAGCTGCTGTACTGCTTGCTGCTGCATG
TATCTACATACAGCTCGTGGTGTATTCTGTCTGTGCAAGACCCATCACCT
GGAAACGTTCGTTTTGTCGCACTCCCTTGCTCTTTGGCTGTCCCTGCCGG
CTGCCGACTCTTTTTGGTGTTCGACACGATAGGTGCAGTAATGGCCGATG
CCATTGCGATGCGAGTGTATTTATACAGCGAGCAGGGCATCAGTCGTGGT
GAGCACGTCGTCAGCCAACAAGTCGGCGTCGAAAGGCTTCCAGCGGTGCT
GGTTGGCAGATTCAGTTCGCCTTGCCGGAGTTGGGCGGGGCAGCGCAGCA
GTTAGGGCTAGGACTTGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12878:1160..2279-

>mRNA_L-elsbetiae_contig12878.2290.1 ID=mRNA_L-elsbetiae_contig12878.2290.1|Name=mRNA_L-elsbetiae_contig12878.2290.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig12878:1160..2279- (Laminarionema elsbetiae ELsaHSoW15)
CCAGCATGGCACGGCTTTCGTCTGGCAGGCGGGTGCTGCCGCGGGGGCCT
CTTCCTGCTGGCTGTTGCCAGCATGGCACGGCTTTCGTCTGGCAGGCGGG
TGCTGCCGCGGGGGCCTCTTCCTGCTGGCTGTTGGTGCAGTAATGGCCGA
TGCCATTGCGATGCGAGTGTATTTATACAGCGAGCAGGGCATCAGTCGTG
GTGAGCACGTCGTCAGCCAACAAGTCGGCGTCGAAAGGCTTCCAGCGGTG
CTGGTTGGCAGATTCAGTTCGCCTTGCCGGAGTTGGGCGGGGCAGCGCAG
CAGTTAGGTGCAGTAATGGCCGATGCCATTGCGATGCGAGTGTATTTATA
CAGCGAGCAGGGCATCAGTCGTGGTGAGCACGTCGTCAGCCAACAAGTCG
GCGTCGAAAGGCTTCCAGCGGTGCTGGTTGGCAGATTCAGTTCGCCTTGC
CGGAGTTGGGCGGGGCAGCGCAGCAGTTAG
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