mRNA_L-elsbetiae_contig12874.2288.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12874.2288.1
Unique NamemRNA_L-elsbetiae_contig12874.2288.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12874.2288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12874contigL-elsbetiae_contig12874:1017..3071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size976
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12874.2288.1prot_L-elsbetiae_contig12874.2288.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12874 2043..2998 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815471.587746-UTR-L-elsbetiae_contig12874:1016..16471622815471.587746-UTR-L-elsbetiae_contig12874:1016..1647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12874 1017..1647 -
1691682913.6344016-UTR-L-elsbetiae_contig12874:1016..16471691682913.6344016-UTR-L-elsbetiae_contig12874:1016..1647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12874 1017..1647 -
1622815471.598271-UTR-L-elsbetiae_contig12874:1986..20421622815471.598271-UTR-L-elsbetiae_contig12874:1986..2042Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12874 1987..2042 -
1691682913.6472347-UTR-L-elsbetiae_contig12874:1986..20421691682913.6472347-UTR-L-elsbetiae_contig12874:1986..2042Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12874 1987..2042 -
1622815471.6392994-UTR-L-elsbetiae_contig12874:2998..30711622815471.6392994-UTR-L-elsbetiae_contig12874:2998..3071Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12874 2999..3071 -
1691682913.6803086-UTR-L-elsbetiae_contig12874:2998..30711691682913.6803086-UTR-L-elsbetiae_contig12874:2998..3071Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12874 2999..3071 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815471.6081326-CDS-L-elsbetiae_contig12874:2042..21351622815471.6081326-CDS-L-elsbetiae_contig12874:2042..2135Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12874 2043..2135 -
1691682913.655943-CDS-L-elsbetiae_contig12874:2042..21351691682913.655943-CDS-L-elsbetiae_contig12874:2042..2135Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12874 2043..2135 -
1622815471.6179078-CDS-L-elsbetiae_contig12874:2477..25971622815471.6179078-CDS-L-elsbetiae_contig12874:2477..2597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12874 2478..2597 -
1691682913.6641681-CDS-L-elsbetiae_contig12874:2477..25971691682913.6641681-CDS-L-elsbetiae_contig12874:2477..2597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12874 2478..2597 -
1622815471.6281893-CDS-L-elsbetiae_contig12874:2995..29981622815471.6281893-CDS-L-elsbetiae_contig12874:2995..2998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12874 2996..2998 -
1691682913.672409-CDS-L-elsbetiae_contig12874:2995..29981691682913.672409-CDS-L-elsbetiae_contig12874:2995..2998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12874 2996..2998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12874.2288.1

>prot_L-elsbetiae_contig12874.2288.1 ID=prot_L-elsbetiae_contig12874.2288.1|Name=mRNA_L-elsbetiae_contig12874.2288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
MEKRWFAGSVDLIDRNRIDHAIGQPLWSINYERHGTVPASKSQVAFLSKD
KLRDMLEWDNENHCWEGQPLS*
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mRNA from alignment at L-elsbetiae_contig12874:1017..3071-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12874.2288.1 ID=mRNA_L-elsbetiae_contig12874.2288.1|Name=mRNA_L-elsbetiae_contig12874.2288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2055bp|location=Sequence derived from alignment at L-elsbetiae_contig12874:1017..3071- (Laminarionema elsbetiae ELsaHSoW15)
GTTCAGTCTCACTCGTCAAAAAAATGCGGAAATAGAGGTCCTGTGGAAAG
CGGAACTAAGGCCTACCGGCAAGATGGTGAGATGGTTGCGTTAGGAGGCT
GGGATTCACTGCTTTCAACGTATTTTGTTTTGTCGTCACCACCAGGACAT
CGCGTGCGCCGAAGTGCCTCAAGCAGACGATGGAGAATGTACTGCACATC
TCCTTTGCTTATTGATTATTACTTTTTGGTACCTTCATATCGGAGTGCGA
GCGATGGCGATAACCACGAGCACGTTCTGTGGCTTGCCGCCTCTTGGCTA
GATATACGGTCTTGGGGGGTTAGATCATGATCGGGGGTCAGACTAGATGC
TGCGTAGCTCGAAACAAACCTAGCGGTTCACTTCAACCTCTACGGTTTGG
TGTTGGGGCAAGATGTCGTAGAGATCATCCAAGACCGAATACGTCCTTTC
TTCCGCCCGTTGGGAAAAAAACAGGAAAAGCGTTGGTTTGCTGGCTCCGT
GGACCTCATCGACAGGAACAGGATAGACCATGCCATCGGTCAACCTCTAT
GGAGCATTAACTACGAACGCCACGGCACAGTGCCGGCCTCGAAGGTATGG
CGAGAGCGCAAGCTCTACTGTAAGAGTTTGTTGGTTTCGAACCTCGGGAT
CGGATTAGTTTCATTGTCCCCAGGTTGTACGGCACAGGCGCGAAATAAGC
AAGAAGTATATGCGGCGGCCACAGTTCCCGTCGGTAGGCATGTTGTACAC
CCGGAGTAGCAGCTTGGAAAACTTGTTGGACGGTTGATTACGAAGATGAT
AGCGGCGGAGCTCGGCATCATGTCAGGCGTTCCCCGCCGTCGGCCATTGG
TACGTGATCGGCGGTGGGTTGCATTCCATAACTCCTGCCCCGAATGTTCT
CCGTATATCTACTGGTGGTGTTTTTTTGCCCTCCAGAGCCAGGTTGCGTT
CTTGAGCAAGGACAAGTTGAGAGACATGCTGGAATGGGACAACGAAAACC
ATTGCTGGGAAGGTCAGCCCCTTTCCTAGAGGCCGAAGCAGCGGGAGGCG
TAGGCCATCAATTCGCTGGATATATTATCCGGAAGGTGAAAGCGCATTCT
TAGGTACCGCACTAGCTGTGATCGGTTCGATGGGCAGTAAATATTTTTCT
CCTCGAACTGCATCACGATTATGTACGAATTGGGTTCGTGGTGGTCCGAC
GTAGGCACAACGAACGCATCTTCATAACATGCTGCTCACTGATCAATACA
GGCGCCGGTATCAAACACAGCACAGCCTCCATCCACCCTTGACCACCACA
CTTTGCAGGCGCGATGGCCGAAACGCTGTCGTCACATCAAGCGCAAGTGA
GAAGCTCTTCTTGTCAGCAACTAACTGCTCACACCATCTTTATTCCGCAC
TCAAACTTTCCTGCTCGCGAGCAGGTTGGCGGAGGTTGCCCTATTGCTAC
CGGGATGCGCTCCGGGGATGACACGTGGCAATCTAGGGAATCTACTGGGC
CACATCACCAATACTGCCGGGCTTTGGCTGGATAATAATGAATAGTCTGG
CAACGTCACTGAACGTCTGGCTACTTCAATCGACGGCCTGACGGATTGCT
GTATAATGTAATATTAGTAGGAGAGGTGAGGGTGTTGAAGAGCGGAGTTT
CGGGTTGGCGGTGTCCTCTGTGGAGCTACATTCAGCCGATGCTAGGGAAA
AAAAAAAAGGTGCGATATTTTGAGGAGGTCTAGGCCAAGCTCAGCACCAC
GACGGGACCATATGAATCGCGATGAACAATGTACCGGATACTCAATGTCC
AACGCAGACCGGTGACCGTTCCTTCCTCACATGGATGCGTTTTGCCTCCG
AGAGCTAAGTAAGGTATCGGCTGCGTTAAAGAAGAGATGCATAGACTAGA
CTATTTCACAAAAGTGAACGCGATGTACGAAGACAGGCGCTTCTCTACGG
CAGGAAAATGAATGATTTGGTTTTGCGTCCGCCAATATCCGAGGGATCAG
GTCGGGGGAAGTACAATTTTGGGACGGCAAGGTAGCGATATACGCTTGAT
CGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12874:1017..3071-

>mRNA_L-elsbetiae_contig12874.2288.1 ID=mRNA_L-elsbetiae_contig12874.2288.1|Name=mRNA_L-elsbetiae_contig12874.2288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig12874:1017..3071- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGAAAAGCGTTGGTTTGCTGGCTCCGTGGACCTCATCGACAGGAA
CAGGATAGACCATGCCATCGGTCAACCTCTATGGAGCATTAACTACGAAC
GCCACGGCACAGTGCCGGCCTCGAAGGAAAAGCGTTGGTTTGCTGGCTCC
GTGGACCTCATCGACAGGAACAGGATAGACCATGCCATCGGTCAACCTCT
ATGGAGCATTAACTACGAACGCCACGGCACAGTGCCGGCCTCGAAGAGCC
AGGTTGCGTTCTTGAGCAAGGACAAGTTGAGAGACATGCTGGAATGGGAC
AACGAAAACCATTGCTGGGAAGGTCAGCCCCTTTCCTAGAGCCAGGTTGC
GTTCTTGAGCAAGGACAAGTTGAGAGACATGCTGGAATGGGACAACGAAA
ACCATTGCTGGGAAGGTCAGCCCCTTTCCTAG
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