mRNA_L-elsbetiae_contig1287.2287.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1287.2287.1
Unique NamemRNA_L-elsbetiae_contig1287.2287.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1287.2287.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 4.790e-26
Identity = 57/98 (58.16%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:    1 MLRSCTPLQLDCFVALWHLHNPQTPVDLYAQPHRPSSHLPRSDALRLFPIGFSFWKDFGGGRVLQGQVYDYYHRWWRVRYSDQDWEELTRSELELLVR 294
            M RS TPLQLDCFVALWHL+ PQ          +P + L R+ AL +FPIGF+F K+  GG +LQGQVYDY   +WRVRY+D +WEEL+R ELE L R
Sbjct: 1784 MRRSFTPLQLDCFVALWHLYFPQLANASAPDSVKPRTPLSRAQALHVFPIGFTFQKELAGGILLQGQVYDYVSPYWRVRYTDGNWEELSRRELERLAR 1881
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BLAST of mRNA_L-elsbetiae_contig1287.2287.1 vs. uniprot
Match: A0A6H5JMP6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP6_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.240e-24
Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:    1 MLRSCTPLQLDCFVALWHLHNPQTPVDLYAQPHRPSSHLPRSDALRLFPIGFSFWKDFGGGRVLQGQVYDYYHRWWRVRYSDQDWEELTRSELELL 288
            MLRS TPLQLD FVALWHL++PQ   DL     +P + L R++AL+LFPI F+  K+  GG  LQGQV+D+   +WRV YSDQ+WEEL R ELE L
Sbjct:  778 MLRSFTPLQLDGFVALWHLYHPQQANDLPPVSVKPRAPLSRAEALKLFPIDFTLRKELDGGVNLQGQVFDFLQPYWRVGYSDQNWEELARRELERL 873
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BLAST of mRNA_L-elsbetiae_contig1287.2287.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.510e-11
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   79 DLYAQPHRPSSHLPRSDALRLFPIGFSFWKDFGGGRVLQGQVYDYYHRWWRVRYSDQDWEELTRSELELLV 291
            DLY  P      L R  ++++   GF+  KDFGGG+ LQGQV+ +  R+WRVRYS+Q+WEELTR ELE  +
Sbjct: 1056 DLYTGPWTVEEVLQRGLSVQVKMQGFTSQKDFGGGQKLQGQVFGHRDRYWRVRYSNQNWEELTRQELERCL 1126
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BLAST of mRNA_L-elsbetiae_contig1287.2287.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.350e-5
Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 1 
Query:   10 SCTPLQLDCFVALWHLHN-----PQTPVDLYAQPHRPSSHLPRSDALRLFPIGFSFWKDF----GGGRVLQGQVYDYYHRWWRVRYSDQDWEELTRSELELLV 291
            S +PLQL  F AL   ++     P+ P  L    H  ++   R  AL+ FP+     ++     G   V +G+V D+Y  +WRV++SD DWEELTR EL   V
Sbjct: 2134 SFSPLQLGIFHALCEDYHGTDVAPRPPGALSRGEHEVAT---REAALKEFPLDTEVARELLDSDGNVVVSRGKVCDFYDPYWRVKFSDDDWEELTRRELRQGV 2233
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1287.2287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KEH2_9PHAE4.790e-2658.16RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5JMP6_9PHAE2.240e-2458.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBF4_9PHAE3.510e-1150.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3V4_9PHAE4.350e-536.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1287contigL-elsbetiae_contig1287:16760..17522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size763
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815471.5381894-CDS-L-elsbetiae_contig1287:16759..170801622815471.5381894-CDS-L-elsbetiae_contig1287:16759..17080Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1287 16760..17080 +
1691682913.6167724-CDS-L-elsbetiae_contig1287:16759..170801691682913.6167724-CDS-L-elsbetiae_contig1287:16759..17080Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1287 16760..17080 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815471.5482295-UTR-L-elsbetiae_contig1287:17080..175221622815471.5482295-UTR-L-elsbetiae_contig1287:17080..17522Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1287 17081..17522 +
1691682913.6257815-UTR-L-elsbetiae_contig1287:17080..175221691682913.6257815-UTR-L-elsbetiae_contig1287:17080..17522Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1287 17081..17522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1287.2287.1prot_L-elsbetiae_contig1287.2287.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1287 16760..17080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1287.2287.1

>prot_L-elsbetiae_contig1287.2287.1 ID=prot_L-elsbetiae_contig1287.2287.1|Name=mRNA_L-elsbetiae_contig1287.2287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MLRSCTPLQLDCFVALWHLHNPQTPVDLYAQPHRPSSHLPRSDALRLFPI
GFSFWKDFGGGRVLQGQVYDYYHRWWRVRYSDQDWEELTRSELELLVRRG
RPSGVE*
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mRNA from alignment at L-elsbetiae_contig1287:16760..17522+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1287.2287.1 ID=mRNA_L-elsbetiae_contig1287.2287.1|Name=mRNA_L-elsbetiae_contig1287.2287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=763bp|location=Sequence derived from alignment at L-elsbetiae_contig1287:16760..17522+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGCGCAGCTGCACACCCCTCCAACTAGACTGTTTCGTGGCGCTCTG
GCATCTACACAACCCGCAGACACCCGTCGACCTCTATGCTCAACCCCATC
GGCCATCTTCTCATCTGCCTCGCAGCGACGCCCTTCGACTGTTTCCGATA
GGTTTCTCCTTCTGGAAAGACTTTGGCGGAGGCCGTGTCTTACAGGGGCA
GGTTTACGACTACTATCACCGATGGTGGCGCGTTCGATACTCCGACCAAG
ACTGGGAAGAACTGACCCGAAGCGAGTTGGAGCTTTTAGTCAGACGTGGA
AGGCCGAGCGGAGTAGAATGACCGCGCCCGGCGTCGTTCAGTGCTGACCG
TAAGATCCACAACTGCTAGGCTCGCGAGATCGCGAAATGCTGCCGGTAGA
TCGTCGCTTGCCATTTTTGAGGTAGTGTCTCATGATCGGCATTTATTTCC
CCCTAGCGCGAGAACGAACGGAACACCGACTTCTCTGGACTTGCTGACAT
AGAAGGCCGACTCTCGGTCTTGACTTGGTCGTGATTGTCGACCGGGTCGC
GGAGTAAGTAGCAGTCGACAAGTGTCGGCTTTGTGTTGGACGTCAGAATT
AGGGTACATTGTGTCGGATATTCAACCTGTAGCAAAGACACCTAAGGGAG
GTGTTTTTCTTGGGAATTTCACCTCAAAAACTGGCCTCGGGTTGTCCGGT
TGTTCATTTATCCCCAAGGCATTTTGTATTGTGTATCAGATACACCTCTG
AATCCGACGTCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1287:16760..17522+

>mRNA_L-elsbetiae_contig1287.2287.1 ID=mRNA_L-elsbetiae_contig1287.2287.1|Name=mRNA_L-elsbetiae_contig1287.2287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig1287:16760..17522+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGCGCAGCTGCACACCCCTCCAACTAGACTGTTTCGTGGCGCTCTG
GCATCTACACAACCCGCAGACACCCGTCGACCTCTATGCTCAACCCCATC
GGCCATCTTCTCATCTGCCTCGCAGCGACGCCCTTCGACTGTTTCCGATA
GGTTTCTCCTTCTGGAAAGACTTTGGCGGAGGCCGTGTCTTACAGGGGCA
GGTTTACGACTACTATCACCGATGGTGGCGCGTTCGATACTCCGACCAAG
ACTGGGAAGAACTGACCCGAAGCGAGTTGGAGCTTTTAGTCAGACGTGGA
AGGCCGAGCGGAGTAGAATGAATGTTGCGCAGCTGCACACCCCTCCAACT
AGACTGTTTCGTGGCGCTCTGGCATCTACACAACCCGCAGACACCCGTCG
ACCTCTATGCTCAACCCCATCGGCCATCTTCTCATCTGCCTCGCAGCGAC
GCCCTTCGACTGTTTCCGATAGGTTTCTCCTTCTGGAAAGACTTTGGCGG
AGGCCGTGTCTTACAGGGGCAGGTTTACGACTACTATCACCGATGGTGGC
GCGTTCGATACTCCGACCAAGACTGGGAAGAACTGACCCGAAGCGAGTTG
GAGCTTTTAGTCAGACGTGGAAGGCCGAGCGGAGTAGAATGA
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