mRNA_L-elsbetiae_contig12868.2285.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12868.2285.1
Unique NamemRNA_L-elsbetiae_contig12868.2285.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12868.2285.1 vs. uniprot
Match: D7FU18_ECTSI (Phospholipid-transporting ATPase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU18_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.210e-36
Identity = 66/75 (88.00%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSAIGRVSNPQDAACLKGRVRMEHPNKLIDNFDGTIELNG 225
            VMGAHEPNP+AKAGICYVETKSLDGETNLKIRQAIRS IGRVS P+DAA LKGRV MEHPNKLIDNF GTIE+ G
Sbjct:  117 VMGAHEPNPQAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIEVEG 191
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BLAST of mRNA_L-elsbetiae_contig12868.2285.1 vs. uniprot
Match: A0A6H5KPG5_9PHAE (P-type phospholipid transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG5_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.650e-36
Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 1 
Query:    4 MGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSAIGRVSNPQDAACLKGRVRMEHPNKLIDNFDGTIELNG 225
            MGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRS IGRVS P+DAA LKGRV MEHPNKLIDNF GTIE+ G
Sbjct:    1 MGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIEVEG 74
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BLAST of mRNA_L-elsbetiae_contig12868.2285.1 vs. uniprot
Match: A0A7S3XHX3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XHX3_HETAK)

HSP 1 Score: 101 bits (252), Expect = 2.650e-26
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSAIGRVSNPQDAACLKGRVRMEHPNKLIDNFDGTIEL 219
            ++G  EP+PE  AGICYVETKSLDGETNLKIRQ +   +G VS   D A L+G + MEHPNKLI++F G +EL
Sbjct:   41 ILGCAEPDPEYPAGICYVETKSLDGETNLKIRQCVVDVVGVVSEESDVALLQGEIEMEHPNKLIESFTGVLEL 113
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BLAST of mRNA_L-elsbetiae_contig12868.2285.1 vs. uniprot
Match: A0A836CFX1_9STRA (Phospholipid-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFX1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.070e-21
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSAIGRVSNPQDAACLKGRVRMEHPNKLIDNFDGTIEL 219
            ++   EP+P A AGICYVETKSLDGETNLKIRQ  +  +G V    +A  L+GRV MEHPN+LI+NF GT+ +
Sbjct:  223 LLSVAEPDPAAAAGICYVETKSLDGETNLKIRQVPKGLVGAVRRSAEAGALRGRVVMEHPNRLINNFAGTLVM 295
[Close]
BLAST of mRNA_L-elsbetiae_contig12868.2285.1 vs. uniprot
Match: D7G0C1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C1_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 4.110e-21
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSAIGRVSNPQDAACLKGRVRMEHPNKLIDNFDGTIEL 219
            +MG  EP  ++ AG+ YVETKSLDGETNLKIRQ ++  +G++  P+D A L GRV MEHP+KLI+NF G + L
Sbjct:  227 IMGVDEPISQSPAGVAYVETKSLDGETNLKIRQVVKGVVGKLLTPEDCAKLSGRVVMEHPDKLINNFKGKLLL 299
[Close]
BLAST of mRNA_L-elsbetiae_contig12868.2285.1 vs. uniprot
Match: A0A6H5JC88_9PHAE (PhoLip_ATPase_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC88_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.380e-19
Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:    1 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQA-----IRSAIGRVSNPQDAACLKGRVRMEHPNKLIDNFDGTIEL 219
            +MG  EP  ++ AG+ YVETKSLDGETNLKIRQ      ++  +G++  P+D A L GRV MEHP+KLI+NF G + L
Sbjct:  191 IMGVDEPISQSPAGVAYVETKSLDGETNLKIRQVLHGRVVKGVVGKLLTPEDCAKLSGRVVMEHPDKLINNFKGKLML 268
[Close]
BLAST of mRNA_L-elsbetiae_contig12868.2285.1 vs. uniprot
Match: A0A0P1ASU1_PLAHL (Phospholipid-transporting ATPase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ASU1_PLAHL)

HSP 1 Score: 85.5 bits (210), Expect = 9.900e-18
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    1 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSAIGRVSNPQDAACLKGRVRMEHPNKLIDNFDGTIELNG 225
            ++   EPNP   AGICYVETKSLDGETNLK+R A  + +  V  P   A L G++R E+PNK I  FDGT+ + G
Sbjct:  217 ILAVAEPNPSEPAGICYVETKSLDGETNLKLRHACDATL-HVRTPAQVAALSGQLRCENPNKAIGRFDGTLSVLG 290
[Close]
BLAST of mRNA_L-elsbetiae_contig12868.2285.1 vs. uniprot
Match: A0A3M6VMN4_9STRA (Phospholipid-transporting ATPase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VMN4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.520e-17
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    1 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSAIGRVSNPQDAACLKGRVRMEHPNKLIDNFDGTIEL 219
            V+   EP  E  +GICYVETKSLDGETNLK+RQA+ + +  +SNP + A L+G V+ E PN  I+ F G +E+
Sbjct:  244 VLAVAEPAGEPSSGICYVETKSLDGETNLKLRQAVAATMNSLSNPAELAVLRGVVKCEQPNPHINKFAGKVEI 316
[Close]
BLAST of mRNA_L-elsbetiae_contig12868.2285.1 vs. uniprot
Match: A0A2D4CKC0_PYTIN (Phospholipid-transporting ATPase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CKC0_PYTIN)

HSP 1 Score: 84.3 bits (207), Expect = 2.520e-17
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    1 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSAIGRVSNPQDAACLKGRVRMEHPNKLIDNFDGTIEL 219
            ++   EP  EA +GICYVETKSLDGETNLK+RQAI + +  V NPQ+   L+G V+ E PN  I+ F G +E+
Sbjct:  258 ILAVSEPVGEAASGICYVETKSLDGETNLKLRQAIPATMSVVVNPQELMLLRGVVKCEQPNPYINKFAGKVEV 330
[Close]
BLAST of mRNA_L-elsbetiae_contig12868.2285.1 vs. uniprot
Match: K3W6I2_GLOUD (Phospholipid-transporting ATPase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6I2_GLOUD)

HSP 1 Score: 84.3 bits (207), Expect = 2.520e-17
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    1 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSAIGRVSNPQDAACLKGRVRMEHPNKLIDNFDGTIEL 219
            ++   EP  EA +GICYVETKSLDGETNLK+RQAI+  +  + NPQ+   L+G V+ E PN  I+ F G +E+
Sbjct:  262 ILSVSEPVGEAASGICYVETKSLDGETNLKLRQAIQPTMNALVNPQELVLLRGIVKFETPNPYINKFAGKVEV 334
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12868.2285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU18_ECTSI1.210e-3688.00Phospholipid-transporting ATPase, putative n=1 Tax... [more]
A0A6H5KPG5_9PHAE1.650e-3689.19P-type phospholipid transporter n=1 Tax=Ectocarpus... [more]
A0A7S3XHX3_HETAK2.650e-2661.64Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CFX1_9STRA4.070e-2158.90Phospholipid-transporting ATPase n=1 Tax=Tribonema... [more]
D7G0C1_ECTSI4.110e-2157.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC88_9PHAE4.380e-1953.85PhoLip_ATPase_N domain-containing protein n=1 Tax=... [more]
A0A0P1ASU1_PLAHL9.900e-1853.33Phospholipid-transporting ATPase n=1 Tax=Plasmopar... [more]
A0A3M6VMN4_9STRA2.520e-1752.05Phospholipid-transporting ATPase n=1 Tax=Peronospo... [more]
A0A2D4CKC0_PYTIN2.520e-1753.42Phospholipid-transporting ATPase n=2 Tax=Pythium i... [more]
K3W6I2_GLOUD2.520e-1752.05Phospholipid-transporting ATPase n=1 Tax=Globispor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12868contigL-elsbetiae_contig12868:4799..5023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue1.9e-30
Seed eggNOG ortholog2880.D7FU18
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons1
Model size225
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815471.3540506-CDS-L-elsbetiae_contig12868:4798..50201622815471.3540506-CDS-L-elsbetiae_contig12868:4798..5020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12868 4799..5020 -
1691682913.5325103-CDS-L-elsbetiae_contig12868:4798..50201691682913.5325103-CDS-L-elsbetiae_contig12868:4798..5020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12868 4799..5020 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815471.36685-UTR-L-elsbetiae_contig12868:5020..50231622815471.36685-UTR-L-elsbetiae_contig12868:5020..5023Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12868 5021..5023 -
1691682913.5468268-UTR-L-elsbetiae_contig12868:5020..50231691682913.5468268-UTR-L-elsbetiae_contig12868:5020..5023Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12868 5021..5023 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12868.2285.1prot_L-elsbetiae_contig12868.2285.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12868 4799..5020 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12868.2285.1

>prot_L-elsbetiae_contig12868.2285.1 ID=prot_L-elsbetiae_contig12868.2285.1|Name=mRNA_L-elsbetiae_contig12868.2285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=74bp
MGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSAIGRVSNPQDAACL
KGRVRMEHPNKLIDNFDGTIELNG
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mRNA from alignment at L-elsbetiae_contig12868:4799..5023-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12868.2285.1 ID=mRNA_L-elsbetiae_contig12868.2285.1|Name=mRNA_L-elsbetiae_contig12868.2285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=225bp|location=Sequence derived from alignment at L-elsbetiae_contig12868:4799..5023- (Laminarionema elsbetiae ELsaHSoW15)
GTGATGGGGGCCCACGAGCCGAACCCGGAGGCGAAGGCGGGCATCTGCTA
CGTGGAGACCAAGTCGCTGGACGGGGAGACCAACCTCAAGATCAGGCAGG
CCATCCGGTCGGCCATCGGGCGCGTCTCGAACCCCCAGGACGCGGCGTGC
CTCAAGGGCCGCGTCAGGATGGAGCACCCCAACAAGCTCATCGACAACTT
CGACGGCACGATAGAGCTCAACGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12868:4799..5023-

>mRNA_L-elsbetiae_contig12868.2285.1 ID=mRNA_L-elsbetiae_contig12868.2285.1|Name=mRNA_L-elsbetiae_contig12868.2285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig12868:4799..5023- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGCCCACGAGCCGAACCCGGAGGCGAAGGCGGGCATCTGCTACGT
GGAGACCAAGTCGCTGGACGGGGAGACCAACCTCAAGATCAGGCAGGCCA
TCCGGTCGGCCATCGGGCGCGTCTCGAACCCCCAGGACGCGGCGTGCCTC
AAGGGCCGCGTCAGGATGGAGCACCCCAACAAGCTCATCGACAACTTCGA
CGGCACGATAGAGCTCAACGGGATGGGGGCCCACGAGCCGAACCCGGAGG
CGAAGGCGGGCATCTGCTACGTGGAGACCAAGTCGCTGGACGGGGAGACC
AACCTCAAGATCAGGCAGGCCATCCGGTCGGCCATCGGGCGCGTCTCGAA
CCCCCAGGACGCGGCGTGCCTCAAGGGCCGCGTCAGGATGGAGCACCCCA
ACAAGCTCATCGACAACTTCGACGGCACGATAGAGCTCAACGGG
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