mRNA_L-elsbetiae_contig12867.2284.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12867.2284.1
Unique NamemRNA_L-elsbetiae_contig12867.2284.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12867.2284.1 vs. uniprot
Match: A0A6H5JX54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX54_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 6.180e-7
Identity = 31/74 (41.89%), Postives = 35/74 (47.30%), Query Frame = 2
Query:   62 SSCFVGVLKSCPRDGR*SE*ISLHDDCLSTPTRAVCILAANNIEECGWDGGDCCECDCDA---EDCGRNGYDCL 274
            S CF  +   C   G   E I              C    NN EECG+DGGDCCECDC++     CG NGYDC 
Sbjct:  203 SECFEDLYPDCVSRGGTLEWIG----------NGACYWG-NNFEECGYDGGDCCECDCESTLESHCGVNGYDCA 265          
BLAST of mRNA_L-elsbetiae_contig12867.2284.1 vs. uniprot
Match: A0A6H5K995_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K995_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 3.760e-5
Identity = 23/41 (56.10%), Postives = 26/41 (63.41%), Query Frame = 2
Query:  122 ISLHDDC---LSTPTRAVCILAANNIEECGWDGGDCCECDC 235
            I L+ DC   L       C  A NN+EECG+DGGDCCECDC
Sbjct:   38 IDLYPDCEGELDHIGDGYCDDATNNLEECGFDGGDCCECDC 78          
BLAST of mRNA_L-elsbetiae_contig12867.2284.1 vs. uniprot
Match: D7G9A3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A3_ECTSI)

HSP 1 Score: 48.1 bits (113), Expect = 6.010e-5
Identity = 22/39 (56.41%), Postives = 25/39 (64.10%), Query Frame = 2
Query:  128 LHDDC---LSTPTRAVCILAANNIEECGWDGGDCCECDC 235
            L+ DC   L       C  A NN+EECG+DGGDCCECDC
Sbjct:    4 LYPDCEGELDLIGDGYCDDATNNLEECGFDGGDCCECDC 42          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12867.2284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JX54_9PHAE6.180e-741.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K995_9PHAE3.760e-556.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9A3_ECTSI6.010e-556.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12867contigL-elsbetiae_contig12867:3068..3725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size275
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12867.2284.1prot_L-elsbetiae_contig12867.2284.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12867 3202..3725 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815471.2846239-UTR-L-elsbetiae_contig12867:3067..32011622815471.2846239-UTR-L-elsbetiae_contig12867:3067..3201Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12867 3068..3201 +
1691682913.491678-UTR-L-elsbetiae_contig12867:3067..32011691682913.491678-UTR-L-elsbetiae_contig12867:3067..3201Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12867 3068..3201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815471.2981534-CDS-L-elsbetiae_contig12867:3201..32851622815471.2981534-CDS-L-elsbetiae_contig12867:3201..3285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12867 3202..3285 +
1691682913.5107238-CDS-L-elsbetiae_contig12867:3201..32851691682913.5107238-CDS-L-elsbetiae_contig12867:3201..3285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12867 3202..3285 +
1622815471.3103907-CDS-L-elsbetiae_contig12867:3668..37251622815471.3103907-CDS-L-elsbetiae_contig12867:3668..3725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12867 3669..3725 +
1691682913.5230534-CDS-L-elsbetiae_contig12867:3668..37251691682913.5230534-CDS-L-elsbetiae_contig12867:3668..3725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12867 3669..3725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12867.2284.1

>prot_L-elsbetiae_contig12867.2284.1 ID=prot_L-elsbetiae_contig12867.2284.1|Name=mRNA_L-elsbetiae_contig12867.2284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=47bp
MIVSQPPPVPSAFLQQTISRSAAGMAATAASATAMRKTVEETGTTA*
back to top

mRNA from alignment at L-elsbetiae_contig12867:3068..3725+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12867.2284.1 ID=mRNA_L-elsbetiae_contig12867.2284.1|Name=mRNA_L-elsbetiae_contig12867.2284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=658bp|location=Sequence derived from alignment at L-elsbetiae_contig12867:3068..3725+ (Laminarionema elsbetiae ELsaHSoW15)
GGATCCATCCCACATGGGTTGCAGGCCGACTCTCATGCAATTGGTGCATG TTTCGTGATGGAGTAGCTGCTTCGTGGGCGTATTGAAATCTTGTCCTCGA GATGGAAGATGATCCGAATAAATAAGCTTACACGATGATTGTCTCTCAAC CCCCACCCGTGCCGTCTGCATTCTTGCAGCAAACAATATCGAGGAGTGCG GCTGGGATGGCGGCGACTGTGAGTGTGCGAAAGTGTCGCGGTGGGAAGCC GGGCCCCAAGCTGTTTCTATGAGTCGGGGATACCCTAAACAGGCATCCGT ACATTTTGGCACTATCATTTCTCCAAGCTAGCGGTAAATGACTTTGAGCT AAGAGCAAACGGTGCCGCTTTGCATGGCCCGGCCTGAGGTTCACCAGGAT TTGGGCAGACAATACACTTGAAGCACCAGTTGTTCTCTAGAGAAGCACCC CGAAACGGTGGGCGATGAGTTGCTGTTCCCTTGTTTAACTACCTTGGCAA GAATGCATCACCCATCCAAGCAGCATAAACATCAATATGTATGTCTCGAC CAGCAGAGTTGATATAGTTTTCCGTCCTATCGCCAAACATACCCTATCAA GGCTGCGAGTGCGACTGCGATGCGGAAGACTGTGGAAGAAACGGGTACGA CTGCCTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12867:3068..3725+

>mRNA_L-elsbetiae_contig12867.2284.1 ID=mRNA_L-elsbetiae_contig12867.2284.1|Name=mRNA_L-elsbetiae_contig12867.2284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=282bp|location=Sequence derived from alignment at L-elsbetiae_contig12867:3068..3725+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTGTCTCTCAACCCCCACCCGTGCCGTCTGCATTCTTGCAGCAAAC
AATATCGAGGAGTGCGGCTGGGATGGCGGCGACTATGATTGTCTCTCAAC
CCCCACCCGTGCCGTCTGCATTCTTGCAGCAAACAATATCGAGGAGTGCG
GCTGGGATGGCGGCGACTGCTGCGAGTGCGACTGCGATGCGGAAGACTGT
GGAAGAAACGGGTACGACTGCCTAGGCTGCGAGTGCGACTGCGATGCGGA
AGACTGTGGAAGAAACGGGTACGACTGCCTAG
back to top