mRNA_L-elsbetiae_contig12867.2284.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12867.2284.1 vs. uniprot
Match: A0A6H5JX54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX54_9PHAE) HSP 1 Score: 55.5 bits (132), Expect = 6.180e-7 Identity = 31/74 (41.89%), Postives = 35/74 (47.30%), Query Frame = 2 Query: 62 SSCFVGVLKSCPRDGR*SE*ISLHDDCLSTPTRAVCILAANNIEECGWDGGDCCECDCDA---EDCGRNGYDCL 274 S CF + C G E I C NN EECG+DGGDCCECDC++ CG NGYDC Sbjct: 203 SECFEDLYPDCVSRGGTLEWIG----------NGACYWG-NNFEECGYDGGDCCECDCESTLESHCGVNGYDCA 265
BLAST of mRNA_L-elsbetiae_contig12867.2284.1 vs. uniprot
Match: A0A6H5K995_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K995_9PHAE) HSP 1 Score: 49.3 bits (116), Expect = 3.760e-5 Identity = 23/41 (56.10%), Postives = 26/41 (63.41%), Query Frame = 2 Query: 122 ISLHDDC---LSTPTRAVCILAANNIEECGWDGGDCCECDC 235 I L+ DC L C A NN+EECG+DGGDCCECDC Sbjct: 38 IDLYPDCEGELDHIGDGYCDDATNNLEECGFDGGDCCECDC 78
BLAST of mRNA_L-elsbetiae_contig12867.2284.1 vs. uniprot
Match: D7G9A3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A3_ECTSI) HSP 1 Score: 48.1 bits (113), Expect = 6.010e-5 Identity = 22/39 (56.41%), Postives = 25/39 (64.10%), Query Frame = 2 Query: 128 LHDDC---LSTPTRAVCILAANNIEECGWDGGDCCECDC 235 L+ DC L C A NN+EECG+DGGDCCECDC Sbjct: 4 LYPDCEGELDLIGDGYCDDATNNLEECGFDGGDCCECDC 42 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12867.2284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12867.2284.1 >prot_L-elsbetiae_contig12867.2284.1 ID=prot_L-elsbetiae_contig12867.2284.1|Name=mRNA_L-elsbetiae_contig12867.2284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=47bp MIVSQPPPVPSAFLQQTISRSAAGMAATAASATAMRKTVEETGTTA*back to top mRNA from alignment at L-elsbetiae_contig12867:3068..3725+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12867.2284.1 ID=mRNA_L-elsbetiae_contig12867.2284.1|Name=mRNA_L-elsbetiae_contig12867.2284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=658bp|location=Sequence derived from alignment at L-elsbetiae_contig12867:3068..3725+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12867:3068..3725+ >mRNA_L-elsbetiae_contig12867.2284.1 ID=mRNA_L-elsbetiae_contig12867.2284.1|Name=mRNA_L-elsbetiae_contig12867.2284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=282bp|location=Sequence derived from alignment at L-elsbetiae_contig12867:3068..3725+ (Laminarionema elsbetiae ELsaHSoW15)back to top |