mRNA_L-elsbetiae_contig1286.2283.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1286.2283.1
Unique NamemRNA_L-elsbetiae_contig1286.2283.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1286.2283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1286contigL-elsbetiae_contig1286:18715..20032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size368
Cds size366
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1286.2283.1prot_L-elsbetiae_contig1286.2283.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1286 18715..20032 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815471.2133768-CDS-L-elsbetiae_contig1286:18714..187641622815471.2133768-CDS-L-elsbetiae_contig1286:18714..18764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 18715..18764 -
1691682913.4560068-CDS-L-elsbetiae_contig1286:18714..187641691682913.4560068-CDS-L-elsbetiae_contig1286:18714..18764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 18715..18764 -
1622815471.2292502-CDS-L-elsbetiae_contig1286:19082..192981622815471.2292502-CDS-L-elsbetiae_contig1286:19082..19298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 19083..19298 -
1691682913.4688337-CDS-L-elsbetiae_contig1286:19082..192981691682913.4688337-CDS-L-elsbetiae_contig1286:19082..19298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 19083..19298 -
1622815471.2442307-CDS-L-elsbetiae_contig1286:19932..200321622815471.2442307-CDS-L-elsbetiae_contig1286:19932..20032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 19933..20032 -
1691682913.480314-CDS-L-elsbetiae_contig1286:19932..200321691682913.480314-CDS-L-elsbetiae_contig1286:19932..20032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 19933..20032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1286.2283.1

>prot_L-elsbetiae_contig1286.2283.1 ID=prot_L-elsbetiae_contig1286.2283.1|Name=mRNA_L-elsbetiae_contig1286.2283.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
DLPGGQGDCCIGGQNGILNNSDLCTTTGKSPCIVPVPACPNNIPGLVSGD
GSVCCDLECGRCGGFECQLLPGGAGSCCIGGPNGVLNNAPFCDTPGATAP
CQIRDELTPAPVVEETPAPMNA
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mRNA from alignment at L-elsbetiae_contig1286:18715..20032-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1286.2283.1 ID=mRNA_L-elsbetiae_contig1286.2283.1|Name=mRNA_L-elsbetiae_contig1286.2283.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1318bp|location=Sequence derived from alignment at L-elsbetiae_contig1286:18715..20032- (Laminarionema elsbetiae ELsaHSoW15)
GACCTCCCCGGGGGACAAGGCGACTGTTGCATCGGCGGACAGAACGGCAT
CCTAAACAACTCCGACCTGTGCACCACGACGGGAAAATCCCCGTGCATCG
GTAAGTCTCGCTCCCGTGTCCCCGGCCATTTCCATTTGTCGTCCGCACAA
CAATTTGGTTGAGTGCTATCATTATCTCGTTTGCCCTCCGACGATTGCAG
ATAAATTCAAGTAAACTTGTATCTAGTCACCATTCACCCGTCAACTTGTT
GTGCACGCACATATGGAACGACCATATATCTACGCTGCACAAAAACCTAT
ATTTCTACATACGAGAAAATTTCGATAGTATGTAACGTCACCACAAACTT
TGGTGCTATTGTATTGTGGTCTTCAAGATATTTACGTACACACACCGATC
CTGCACATATCCATCCTCGCTCTGTTCCTTGAAGTAAGTGGCACACCCTC
CATGCTGTCATACCCGGCGGTGCAAATGGACGCGATGTTTCTGCTGTACG
ATATTTTCCCCGGAGCGGATCGTGGTCCATGTTGTGTTTCTCCGTCGCGG
TTTTCTTACTTTCCCTTGCTGGCCCACGCATATGCTGCGACTATCTGATG
TCATTCAATGAGATTTGGGCCGATCCGGTACGTTTTCACTCAGGGTTAGG
TTTTTCGTGTGTCCAACATAGACCTAGATATATCTAGAATCTAGATAGAC
TTTAATTATCGGTTCTTCTTCTTTTCCGCTGCAGTCCCTGTCCCGGCGTG
CCCAAACAATATTCCTGGCCTCGTCTCCGGCGACGGCTCCGTGTGCTGCG
ACCTTGAGTGCGGACGGTGCGGAGGGTTCGAGTGCCAGCTTTTACCCGGG
GGTGCAGGCAGCTGTTGCATCGGCGGGCCGAACGGCGTCCTCAACAACGC
ACCCTTCTGCGACACGCCCGGAGCTACCGCCCCTTGCCAAATTCGTGACG
GTTAGTGGGGTGTCTCTCGATGATCGGTGCACTGTCGCTGCCTCTATTGT
AGATTACACGGCGAGCCCGATGCTTGCCGGTTCAAAAACACGGTTCCTTT
CCTTGACTCGCCTTTTCTCGCTTTATCGCATCGTTCGGTGTGATAACACT
GCGGCTGGAAGATCCTATCGACGGCGCGCAAGAATTTGGTGGATGCTTTG
GTCACTCGCCGCGTATCTCGCTCATAGACTTCTCTTCCCTTGCCGACGCC
ACGCATCTACTTGATGTATACATCTCGATTGCTCGACGAACGTTTTAATC
TTCCATGCTTATTTACAGAGCTCACCCCTGCGCCCGTCGTTGAAGAGACC
CCAGCCCCGATGAACGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1286:18715..20032-

>mRNA_L-elsbetiae_contig1286.2283.1 ID=mRNA_L-elsbetiae_contig1286.2283.1|Name=mRNA_L-elsbetiae_contig1286.2283.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig1286:18715..20032- (Laminarionema elsbetiae ELsaHSoW15)
GACCTCCCCGGGGGACAAGGCGACTGTTGCATCGGCGGACAGAACGGCAT
CCTAAACAACTCCGACCTGTGCACCACGACGGGAAAATCCCCGTGCATCG
GACCTCCCCGGGGGACAAGGCGACTGTTGCATCGGCGGACAGAACGGCAT
CCTAAACAACTCCGACCTGTGCACCACGACGGGAAAATCCCCGTGCATCG
TCCCTGTCCCGGCGTGCCCAAACAATATTCCTGGCCTCGTCTCCGGCGAC
GGCTCCGTGTGCTGCGACCTTGAGTGCGGACGGTGCGGAGGGTTCGAGTG
CCAGCTTTTACCCGGGGGTGCAGGCAGCTGTTGCATCGGCGGGCCGAACG
GCGTCCTCAACAACGCACCCTTCTGCGACACGCCCGGAGCTACCGCCCCT
TGCCAAATTCGTGACGTCCCTGTCCCGGCGTGCCCAAACAATATTCCTGG
CCTCGTCTCCGGCGACGGCTCCGTGTGCTGCGACCTTGAGTGCGGACGGT
GCGGAGGGTTCGAGTGCCAGCTTTTACCCGGGGGTGCAGGCAGCTGTTGC
ATCGGCGGGCCGAACGGCGTCCTCAACAACGCACCCTTCTGCGACACGCC
CGGAGCTACCGCCCCTTGCCAAATTCGTGACGAGCTCACCCCTGCGCCCG
TCGTTGAAGAGACCCCAGCCCCGATGAACGCCAGCTCACCCCTGCGCCCG
TCGTTGAAGAGACCCCAGCCCCGATGAACGCC
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