mRNA_L-elsbetiae_contig1286.2282.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1286.2282.1
Unique NamemRNA_L-elsbetiae_contig1286.2282.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1286.2282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1286contigL-elsbetiae_contig1286:4819..11064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons9
Model size409
Cds size408
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815471.0774534-CDS-L-elsbetiae_contig1286:4818..48421622815471.0774534-CDS-L-elsbetiae_contig1286:4818..4842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 4819..4842 -
1691682913.3636959-CDS-L-elsbetiae_contig1286:4818..48421691682913.3636959-CDS-L-elsbetiae_contig1286:4818..4842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 4819..4842 -
1622815471.0893078-CDS-L-elsbetiae_contig1286:6460..65081622815471.0893078-CDS-L-elsbetiae_contig1286:6460..6508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 6461..6508 -
1691682913.3753972-CDS-L-elsbetiae_contig1286:6460..65081691682913.3753972-CDS-L-elsbetiae_contig1286:6460..6508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 6461..6508 -
1622815471.1011589-CDS-L-elsbetiae_contig1286:6982..70301622815471.1011589-CDS-L-elsbetiae_contig1286:6982..7030Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 6983..7030 -
1691682913.390272-CDS-L-elsbetiae_contig1286:6982..70301691682913.390272-CDS-L-elsbetiae_contig1286:6982..7030Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 6983..7030 -
1622815471.1130755-CDS-L-elsbetiae_contig1286:7511..75591622815471.1130755-CDS-L-elsbetiae_contig1286:7511..7559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 7512..7559 -
1691682913.4019895-CDS-L-elsbetiae_contig1286:7511..75591691682913.4019895-CDS-L-elsbetiae_contig1286:7511..7559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 7512..7559 -
1622815471.1233766-CDS-L-elsbetiae_contig1286:7993..80411622815471.1233766-CDS-L-elsbetiae_contig1286:7993..8041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 7994..8041 -
1691682913.4109752-CDS-L-elsbetiae_contig1286:7993..80411691682913.4109752-CDS-L-elsbetiae_contig1286:7993..8041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 7994..8041 -
1622815471.135252-CDS-L-elsbetiae_contig1286:8475..85231622815471.135252-CDS-L-elsbetiae_contig1286:8475..8523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 8476..8523 -
1691682913.4196832-CDS-L-elsbetiae_contig1286:8475..85231691682913.4196832-CDS-L-elsbetiae_contig1286:8475..8523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 8476..8523 -
1622815471.145689-CDS-L-elsbetiae_contig1286:8990..90381622815471.145689-CDS-L-elsbetiae_contig1286:8990..9038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 8991..9038 -
1691682913.4284496-CDS-L-elsbetiae_contig1286:8990..90381691682913.4284496-CDS-L-elsbetiae_contig1286:8990..9038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 8991..9038 -
1622815471.1562092-CDS-L-elsbetiae_contig1286:10020..100681622815471.1562092-CDS-L-elsbetiae_contig1286:10020..10068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 10021..10068 -
1691682913.4367633-CDS-L-elsbetiae_contig1286:10020..100681691682913.4367633-CDS-L-elsbetiae_contig1286:10020..10068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 10021..10068 -
1622815471.1715775-CDS-L-elsbetiae_contig1286:11016..110641622815471.1715775-CDS-L-elsbetiae_contig1286:11016..11064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 11017..11064 -
1691682913.4456527-CDS-L-elsbetiae_contig1286:11016..110641691682913.4456527-CDS-L-elsbetiae_contig1286:11016..11064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1286 11017..11064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1286.2282.1prot_L-elsbetiae_contig1286.2282.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1286 4819..11064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1286.2282.1

>prot_L-elsbetiae_contig1286.2282.1 ID=prot_L-elsbetiae_contig1286.2282.1|Name=mRNA_L-elsbetiae_contig1286.2282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
MPLPRLPPTCLLRLPQMPLPRLPPTCLLRLPQMPLPRLPPTCQLRLPQMP
LPRLPPTCLLRLPQMPLPRLPPTCLLRLPQMPLPRLPPTRRPRLPQMPLP
RLPPTCLLLLPQMPLPRLPPTCQLRLPQMPLPRLPP
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mRNA from alignment at L-elsbetiae_contig1286:4819..11064-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1286.2282.1 ID=mRNA_L-elsbetiae_contig1286.2282.1|Name=mRNA_L-elsbetiae_contig1286.2282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6246bp|location=Sequence derived from alignment at L-elsbetiae_contig1286:4819..11064- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCTACCCCGGCTCCCACCGACATGCCTACTCCGGCTCCCACAGGT
GAACAGAATAAATGTCGATGCGGAGTCACAAGTATTGAAGGCACATCGAT
GGTTCTGTCTGGTGCTTGTTTATTACCCAGGAATCGTCTAACTGGACGGG
TGTTCCAACCGAAGCACCAGAGAGCAGTCCCATTTTCGACGGGAACAAAC
TCACGTTAAATCCACCCACGAACCACTGACAATGTGCTGCTAGCCGGGTG
CTCTTGTCGTCTTGGCAAGCTAGAACTCGAACCGATCTCGAACGTTTCTA
GCCTGGTTGCCTCTCGACTGATGCGCGCATCCCTTCCTTGCTTTCATCTC
TCGTGCTGCTGCTTGAGTGGTCACTGTGTGTGAAGGAATGTGTCGTATGG
TTAACCGTGTACTGCATCTGTCTCGCCTCTCGTCGGCTTTCCATTTCGTA
CCCACGCACGTATACCGACCCCCCACTCGATTCCTTTGTTCTCGTGCTCC
CCTTGACAGATGCCCCTACCCCGGCTCCCACCGACATGCCCACTCCGGCT
CCCACAGGTGAACAGAGTAAATGTCTATGCGGAGTCACAAGTATTGGAGG
CACATCGATGGTTCTGTCTAGTGCTCCTTTGCTACTCAGGAATCGTCTAA
CTAAACGGGTGTTCCAACCGAAGCACCAGAGAGCAGTCCCATTTTCGACG
GGAACAAACTTGCGTTCAATCCACCAAAAAGAACAACTGACAATGTGCTG
CTAGCCGGGTGCTCTTGTCGTCTTGGCAAGCTAGAACTCGAACCGATCTC
CAACGTTTCTAGCCTGGTTGCCTCTCGACTGATGAGCGCATCCCTTCCTT
GTTTTCAGATCTCCATGTGAAGGAATGTATCTTATGGTTAACCGTGTACT
GCATCTGTCTCGTCTCTCGTCGGCTTTACATTACGTACCCACGCACGTAT
ACCGACCCCCCGCTCGATTCCTTTGTTGTCGTGCTCCCCTTGACAGATGC
CCCTACCCCGGCTCCCACCGACATGCCTACTCCGGCTCCCACAGGTGAGC
AGAGTAAATGTCTATGCGGAGTCACAAGTATTGGAGGCACATCGACGGTT
CTGTCTAATGCTCCTTTGCTACTCAGGAATCGTCTTACTAAACGGGTGTT
CCAACCGAAGCACCAGAGAGCAGTCCCATTTTCGACGGGAACAAACTTGC
GTTCAATCCACCAAAAAGAACAACTGACAATGTGCTGCTAGCCGGGTGCT
CTTGTCGTCTTGGCAAGCTAGAACTCGAACTAATCTCCAACGTTTCTAGC
CTGGTTGCCTCTCGACTGATGCGCGCATCCCTTCCTTGCTTTCATCTCTG
GCGCTGCTGCTTAAGTTGTCACTGTGTGTGAAGGAATCTATCTTGTGGTT
AACCGTGTACTGCATCTGTCTCGCCTCTCGTCGGCTTTCCATTTCGTACC
CACGCACGTATACCGGCCCCACTCGATGTCTCTGTATTCGTCCTTCCCGA
GTCAGATGCCCCTACCCCGGCTCCCACCGATATGCCTACTCCGGCTCCCA
CAGGTGAACAGAGTATATGTCGATGCGGAGTCACAACCAATGGAGGCACA
CCGATGGTCCTGTCTGGTGCTCGTTTCATTAAAATACCCAGGAGTCATCT
AACTAAACGGGTGTTCCGACCGAAGCACCAGAGAACAGTACCATTTTCGA
CGGGAACCAACTCACCTTTAATACACATATTATAACAACTGACATTGTGC
TGCTAGCCGCGTGCTCTTGTCTTCTTGGCAAGCTAGAATTCGAACCGATC
TCGAACGTTTCTAGCCTGGTTGCCTCTCGGCTGATGTGCTCATCCCTTCC
TCCCTTCCTTGCTTTCATATCTGGCGCTTCTGTCCAAGTAGGGTCCATGT
GAAGGCATGTTTCTTATGGTTAACGGTTGACAGCCTCTGTCTCGTCTCTC
GTCGGCTTTCCATTTCCTATTCACGCACGTATCCCGGCCCCACCCGATGT
CTCTGTCTTCGTCCTTCCCTCGACAGATGCCCCTACCCCGGCTCCCACCG
ACATGCCAACTCCGGCTCCCACAGGTGAACAGAGTATGTGTCTATGCGGA
GTCGCAAGTACTGGACGCACATCGATGGTTTTGTCTGGCGCCCGCTCTAC
TCAAATACCCAGGAATCGTCTAACTCGACGGGTGTTCCAACCGAAGCACC
AGATAGCTTAATGCCATTTTCAAGGAGGACTACCTTATGTTCAATGCACA
AAAAACAACAACTGACACTGTGCTGCTAGCCAGGTACTCTTGTCGTCTTG
GCAAGCTAGAATTCGAACCGATTTCGAACGTTTCTAGCCTGGTTGCCTGT
CGACTGATGCGCGCATCCCTTCGTTGCTTTTATCTCTCGTGCTGATGCTT
ACGTCGTCTCCATGTGCAGGAATGCAGCTTGTGGTTGACATTTTACGGCC
TCTGTCTCGTCTTTCGTCGGCTTTCCATTTCCTACTCACGCACGTATACC
GACCCCACTCGATGTCTCTGTCTTCGTGCTCCCCTTGACAGATGCCCCTA
CCCCGGCTCCCACCGACATGCCTACTCCGGCTCCCACAGGTGAACAGAGT
ATATGTATATGCGAAGTCGCGAGTATTGGAGGCATATCGATGGTTCTGTC
TGGTGCTCGTTTGTCACCCAGGAGTCATCTAACTAAACGGGTGTTCCAAC
CGAAGCACCAGCGAGCAGTACAATTTTTGAGGGGAACAAACCTACGTTCA
ATACACCAACAACCACTGGCAATGTGCTGCTAGCCGGGTGCTCTTGTCGT
CTTGGCAAGCTAGAACTCGAACCGATCTCCGACGTTTCTAGCCTGGTTGC
CTCTCGACTGATGCGCGCATCCCTTCCTTGTTTTCAGATCTCTATGTGGA
GGAATGTATCTTATGGTTAACCGTGTACTGCATCTGTCTCGTCTCTCGTC
GGCTTTCCATTTCCTACTCACGCACGTATCCCGGCCACACCCAATATCTC
TGTTCTCGTCCTCCCCTCGACAGATGCCCCTACCCCGGCTCCCACCGACA
TGCCTACTCCGGCTCCCACAGGTGAACAGAGTATGTGTCTATGCGGAGTC
GCAAGTATTGGAGGCACATCGATGGTTCTGTTTGGTGCTCGTTTGTTACC
CAGGAATCGTCTAACTAAATTCCAACCGAAGCACCAGAGAGCATTACCAA
TTCCAAGGGGAACCAACTTACGTTCAATACACCAACTACAACAGATGACA
ATGTGGTGCTATGTAGCCGGGTGCTCTTGTCGTCTTGGCAAGCTAGAAAT
CGAACCGATCTCGAACGTTTCTAGCCTGGTTGCCTGTCGACTGATGCGCG
CATCCCTCCCTTTCTCTCATCTCCCTGGTGCTGCTGCTTAGACTAGGTTG
ACATCTTACGGCCTCTGTCTCGTCTCTCGTCGGCTTTCCGTTTCCTACCC
ACGGACGTATCCCGGCCCCGCCCGATCTCTCTGTCTTTCATGCTCCCCTC
GACAGATGCCCCTACCCCGGCTCCCACCAACACGCCGACCCCGGCTCCCA
CAGGTGAACCCAGAGTAAATGTATATGCGCTGTCGTAAGTATTGAAGCCA
CATCGATGGGTCTGTCTCGTGCTCGTTTGATTAAAATACCCAGCAATCGT
CTAACGAAACTGGTACATAATTCAAACGGAGCACCAGAGAGCAGTACCAT
GTTCGACGGGGCTTAACTTACGTTCCGAAACAAAACACGCTAACTGACAA
TGTGGTACTACATGCCCATGTGCTCCTCCTGTGGTCTTGGCAAGCTAGAA
TTCGGACCGATCTCGAGCGTTTCTAGCCTGGTCGCCTTTCTACTGATGAT
GCGCATCCCTTCCTTGCTTCTTCTCTTGCGCTACTGCTGATTAAGCGTTC
TCCATGTGGAGGAACATAGCTCATGGTTAACGGTTTACTGTCTCTGTCTC
GTCTGTCGTTGGCCTTTCATTCCCTCCCCACGCACATATCCCGGCTCCAC
TCGATGTCTTTGATATTCGTGCTCCTTCCGACAGATGCCCCTACCCCGTC
TCCCACCAACATGCCTACTCCTGCTCCCACAGGTGAACAGAGAAAGTGTA
TATGTGGAGTGGCAAATATTGGAGGCACATCTATGGTTCTGCTTGGTGTT
CGTTTTATTAAAATACTATCGTAAGCAATCGTCTAACGAAACGGGCACAT
ACTTCAAACGAAGCACAGAGTGCAATAACATGTTCGACGGGGCTTAACTT
ATGTTCAATACACAAAACACAGACCTGACCCAATGTGGTGCTACCCATGT
GCTCTTGTCGTCTGGGCAAGCTAGAATTCGAACCGATCTCCAACGTTACT
AGCCTAGTTGCCTTTCGACGGATGCGCGCATCCTTTCCTTGTTTCATCTC
TGGCGCTACTGCTCATTAAGTGGCCTCTATAAGAAACGTACCTTATAGTT
AACGGTTGATGGTCTCTGTCTCGTCTCTCGTCGGCTTTCCATTTCCTACT
CACGCACGTATCCCGGTCCCACTTGATGTCTTTGTCTTTTGTGCTCTCCT
CGACAGATGCCCCTACCCCGGCTCCCACCGACATGCCAACTCCGGCTCCC
ACAGGTGAACGAATTATGTATATGCGGAGTCGCAAATATGGAGGCATCTG
TCTGGTGCTCGTTTGATTAAAATACCCAGGAATCGCCTAACTAAACGGGT
GATTCAACCGAAGCACAAGAGAGCAGTACCATGTTCGACAGGAACTCACT
TACGTTCAAATAACAAAAACCACACCAGATCCAATGTGGTGCTACCCATG
TGCTCTTGTCGTCTTGGCAAGCTAGAATTCGAACCAATCTCGAACGTTAC
TAGCCCGGTTGCCTTTCGACTGATACGCATCCCTTCCTTTTTTTCATCTC
TGGCACTGATGCTTAAGTGGTGCCCATGTGAAGGAATGTAGCTTTTAGTT
AACGGTTGACGACCTCTGTCGCGTCTCTCGTCGGCTTTTCATTTCCTACC
CACGCACCTATACCGGCCCCACTCGATGCCTCTGTCTTTCGTACTCCCCT
CGACAGATGCCCCTACGCCGGCTCCCACCGACATGCCGACCCCGGCTCCC
ACAGGTGAACAGAGAACATTTTTATACGCGGAGTCGCAAAGTGGAGGCAC
ATGGATGGTTCTGTCTGGGGGCATGCACATTACCGGGCGAGGTTATGACC
GCGGTTACGAGCGTAGACGACCGTCCATGACGGGTCATGAACCGCCACGA
CCGACCACCACAACGGTCGCGCCCATCCATGACCGCTCATCGAGCAACGG
TGTGATGACTGGTTATGAACGTTTACGACCGTTCATGGCCATTCATGATA
CAATGACCAACTGCTGTCGTGATTGCGGTCGGGAAGAAAGTGTTATACCG
GTCGTGACCGCGGTCATGACGACGATGTCATGACCGGTCATTACCGGTCA
TAGAAAATTCTTTTTGAAGAATAGAATTTTAGCGCCGTGTCGTGCATAAC
CGTGCATGAACGTGCGTGAACGCGCAGAGGAATTACTGTCATAAATATAG
TTTCAGCGCCGTGCCGTGGACGGCCGTGAACCCTAACCCTAACCCTTAGG
ACCGGTCATGAACGGTCATGAACGGTCGTGACTGCCAAATTCATGATCGA
TGTCAAGGTGTGTGGACAACACTTCATGTGGCCGTCATGACCTGTCACAT
GAACTTTCGCGTGACCGAGGTCATAAACATCCAGTCATGGCCGGTCGTAA
GTAGCGCGTCATGACCATTCATGAACGGTCATGAACGGGGATTTTGTCGC
CCACTAGTGTCCAGTATTGTCTGTCTGGTTCTCGTTTTATTAAAATGCCC
AGGAATCGTCTACCTAAACAGGTGCTTTAACAAAAGCACCAGAGAGCAAT
ACCATTTTCGACGGGAACCAACTTACGTTCAATACACACTACAATCACTG
ACATTGTGCTGATAGCCGGGTCTTCTTGACGTCTTGGCAAGCTAGAATTT
AAACACATCTCGAACGTTACAAGCCTGGTTGTCTTTCGACTGATGCGCAT
CCCTTCCTTGTTTTCATTTCTGGCACTGATGCTTACGTCGTCTCCATGTG
CAGGAATGCAGCTTGTGGTTGACATTTTACGGCCTCTGTCTCGTCTCTCG
TCGGCTTTCCATTTTCACGCACGTATACCGACCCCCCAACCGATGTCTCT
GTCTTCGTCGTTCCCTCGACAGATGCCCCTACCCCGGCTCCCACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1286:4819..11064-

>mRNA_L-elsbetiae_contig1286.2282.1 ID=mRNA_L-elsbetiae_contig1286.2282.1|Name=mRNA_L-elsbetiae_contig1286.2282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig1286:4819..11064- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCTACCCCGGCTCCCACCGACATGCCTACTCCGGCTCCCACAGAT
GCCCCTACCCCGGCTCCCACCGACATGCCTACTCCGGCTCCCACAGATGC
CCCTACCCCGGCTCCCACCGACATGCCTACTCCGGCTCCCACAGATGCCC
CTACCCCGGCTCCCACCGACATGCCTACTCCGGCTCCCACAGATGCCCCT
ACCCCGGCTCCCACCGACATGCCAACTCCGGCTCCCACAGATGCCCCTAC
CCCGGCTCCCACCGACATGCCAACTCCGGCTCCCACAGATGCCCCTACCC
CGGCTCCCACCGACATGCCTACTCCGGCTCCCACAGATGCCCCTACCCCG
GCTCCCACCGACATGCCTACTCCGGCTCCCACAGATGCCCCTACCCCGGC
TCCCACCGACATGCCTACTCCGGCTCCCACAGATGCCCCTACCCCGGCTC
CCACCGACATGCCTACTCCGGCTCCCACAGATGCCCCTACCCCGGCTCCC
ACCAACACGCCGACCCCGGCTCCCACAGATGCCCCTACCCCGGCTCCCAC
CAACACGCCGACCCCGGCTCCCACAGATGCCCCTACCCCGTCTCCCACCA
ACATGCCTACTCCTGCTCCCACAGATGCCCCTACCCCGTCTCCCACCAAC
ATGCCTACTCCTGCTCCCACAGATGCCCCTACCCCGGCTCCCACCGACAT
GCCAACTCCGGCTCCCACAGATGCCCCTACCCCGGCTCCCACCGACATGC
CAACTCCGGCTCCCACAGATGCCCCTACCCCGGCTCCCACCGATGCCCCT
ACCCCGGCTCCCACCG
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