mRNA_L-elsbetiae_contig12850.2281.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12850.2281.1
Unique NamemRNA_L-elsbetiae_contig12850.2281.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12850.2281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12850contigL-elsbetiae_contig12850:2757..3087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size331
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815471.026977-UTR-L-elsbetiae_contig12850:2756..27751622815471.026977-UTR-L-elsbetiae_contig12850:2756..2775Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12850 2757..2775 +
1691682913.3357363-UTR-L-elsbetiae_contig12850:2756..27751691682913.3357363-UTR-L-elsbetiae_contig12850:2756..2775Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12850 2757..2775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815471.0375721-CDS-L-elsbetiae_contig12850:2775..30871622815471.0375721-CDS-L-elsbetiae_contig12850:2775..3087Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12850 2776..3087 +
1691682913.3502192-CDS-L-elsbetiae_contig12850:2775..30871691682913.3502192-CDS-L-elsbetiae_contig12850:2775..3087Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12850 2776..3087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12850.2281.1prot_L-elsbetiae_contig12850.2281.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12850 2776..3087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12850.2281.1

>prot_L-elsbetiae_contig12850.2281.1 ID=prot_L-elsbetiae_contig12850.2281.1|Name=mRNA_L-elsbetiae_contig12850.2281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MYPARQRRRSAVNRCRGVASIDALAIQLQKERLHFVTTPAIVLDRFGRLD
KLDPPFLEIGRLYLFSTRAIVFANDNRLDRLNPPLLENNRPHRLDPPALL
RLRH
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mRNA from alignment at L-elsbetiae_contig12850:2757..3087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12850.2281.1 ID=mRNA_L-elsbetiae_contig12850.2281.1|Name=mRNA_L-elsbetiae_contig12850.2281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=331bp|location=Sequence derived from alignment at L-elsbetiae_contig12850:2757..3087+ (Laminarionema elsbetiae ELsaHSoW15)
TTCACCTCCCCAGCACAGCATGTATCCGGCTCGACAACGTCGCCGCTCTG
CCGTGAACAGATGCCGCGGTGTCGCCAGCATAGATGCATTGGCAATCCAG
CTCCAGAAGGAAAGACTTCACTTCGTCACGACACCAGCCATCGTTCTTGA
CAGATTTGGCCGACTCGACAAACTCGATCCACCATTTCTCGAAATCGGCA
GACTCTATCTCTTCAGCACACGAGCTATCGTTTTTGCAAACGACAACAGA
CTCGACCGACTCAATCCACCATTGCTCGAAAACAACAGACCCCACAGACT
CGACCCACCAGCTCTCCTCCGGCTGCGCCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12850:2757..3087+

>mRNA_L-elsbetiae_contig12850.2281.1 ID=mRNA_L-elsbetiae_contig12850.2281.1|Name=mRNA_L-elsbetiae_contig12850.2281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig12850:2757..3087+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATCCGGCTCGACAACGTCGCCGCTCTGCCGTGAACAGATGCCGCGG
TGTCGCCAGCATAGATGCATTGGCAATCCAGCTCCAGAAGGAAAGACTTC
ACTTCGTCACGACACCAGCCATCGTTCTTGACAGATTTGGCCGACTCGAC
AAACTCGATCCACCATTTCTCGAAATCGGCAGACTCTATCTCTTCAGCAC
ACGAGCTATCGTTTTTGCAAACGACAACAGACTCGACCGACTCAATCCAC
CATTGCTCGAAAACAACAGACCCCACAGACTCGACCCACCAGCTCTCCTC
CGGCTGCGCCACATGTATCCGGCTCGACAACGTCGCCGCTCTGCCGTGAA
CAGATGCCGCGGTGTCGCCAGCATAGATGCATTGGCAATCCAGCTCCAGA
AGGAAAGACTTCACTTCGTCACGACACCAGCCATCGTTCTTGACAGATTT
GGCCGACTCGACAAACTCGATCCACCATTTCTCGAAATCGGCAGACTCTA
TCTCTTCAGCACACGAGCTATCGTTTTTGCAAACGACAACAGACTCGACC
GACTCAATCCACCATTGCTCGAAAACAACAGACCCCACAGACTCGACCCA
CCAGCTCTCCTCCGGCTGCGCCAC
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