mRNA_L-elsbetiae_contig1285.2280.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1285.2280.1
Unique NamemRNA_L-elsbetiae_contig1285.2280.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1285.2280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1285contigL-elsbetiae_contig1285:20449..21989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size766
Cds size765
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815470.9752455-CDS-L-elsbetiae_contig1285:20448..208751622815470.9752455-CDS-L-elsbetiae_contig1285:20448..20875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1285 20449..20875 -
1691682913.315043-CDS-L-elsbetiae_contig1285:20448..208751691682913.315043-CDS-L-elsbetiae_contig1285:20448..20875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1285 20449..20875 -
1622815470.9902864-CDS-L-elsbetiae_contig1285:21651..219891622815470.9902864-CDS-L-elsbetiae_contig1285:21651..21989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1285 21652..21989 -
1691682913.3241646-CDS-L-elsbetiae_contig1285:21651..219891691682913.3241646-CDS-L-elsbetiae_contig1285:21651..21989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1285 21652..21989 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1285.2280.1prot_L-elsbetiae_contig1285.2280.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1285 20449..21989 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1285.2280.1

>prot_L-elsbetiae_contig1285.2280.1 ID=prot_L-elsbetiae_contig1285.2280.1|Name=mRNA_L-elsbetiae_contig1285.2280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
PPSSGERQQNRGPLKIPPLPKILFRPPAAPAAAAACTSSGQQRSAPAAAV
ADPDPGIGVVPPPSRGSAHGGYFGSSRAFSMNSLGRWSSYAGTPTSTSFS
PSSAVANPFIATRYTVRSMQSIYSGSQYAGSEVGSSISKASPGAGTGVRR
VVSWPTKTRAHYSLPRHLTVAENRDVEDLGGETVDVGNHAPGDGNGNDGG
SGALRGPAPADRTGGTANHRGRGRETVNGSGAGRGHGDAAISPDGANERR
RDNAR
back to top

mRNA from alignment at L-elsbetiae_contig1285:20449..21989-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1285.2280.1 ID=mRNA_L-elsbetiae_contig1285.2280.1|Name=mRNA_L-elsbetiae_contig1285.2280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1541bp|location=Sequence derived from alignment at L-elsbetiae_contig1285:20449..21989- (Laminarionema elsbetiae ELsaHSoW15)
CCGCCATCGTCCGGAGAGCGACAACAGAACCGCGGGCCGCTCAAGATCCC
GCCGCTGCCCAAGATACTCTTCCGCCCGCCCGCTGCGCCCGCCGCCGCCG
CCGCTTGCACCTCCTCCGGGCAGCAACGCTCCGCCCCCGCGGCTGCCGTT
GCCGACCCCGACCCCGGCATCGGCGTCGTGCCTCCTCCATCACGCGGGAG
CGCCCACGGTGGCTACTTCGGAAGCAGCCGCGCCTTCAGCATGAACAGCC
TCGGGCGATGGTCGTCCTACGCGGGGACTCCGACGAGCACCTCCTTTTCA
CCTTCTTCCGCCGTGGCCAACCCGTTCATCGCGACCAGGTACGTGGGTGT
GTCCCGCCCGCCGGCCCCCCCGCCCCGCACGCCCGGTAGGCCTACCACGC
GGGTTTTTTACGTAAGCTAAACATTTGGGATAAAGTACATATGGAGACGG
CTGAGCTGAGGGTTTCGGTTTGGGGTTGGGGTTAGAGTTACGGAACCCCT
GCCCCTATTCCCTGGATAAAAGTGAATTTCTTCACGAAGGAGTTTCCGCC
CGCCCGCTCCACGCAGATTGCGGTGGTGGTGGTGCCAGTAGTGAGTTCTC
CAAGGTGGCCGGTACTTGTTTTCTGCAAAGCATTGTTTGTGGCGGTGGAG
GCGGCAATGTGTCTGCGTCGAGGTTTGTGGGGGAGTCAGACACGGAAGAT
CGAAAAGAAGAAAAAGAAAAAAAAGTTCAGAGACCTTGCTTTTATTTTTC
TTCTACATACCTACTGATTTTTAGCATTCGTTCCAATGGATACGTATGCA
CGACGCGGCTGTGACGTGCCACGATTGTTGCGGTGTTCTATTTAGCCCTC
TGCTTCAGAGATTGGCAACCACGAAACCGGCGCGGGCTTTTCTCCGAGTC
GGGGGGTGCTTCTCAAAACCTCCCGCCCCTCGCTCGAGCACCTACCCACC
CGATACCGATACGATCTGTAGAAGCAAACCATCGTTTCCAAGCCTTCATT
AACCTCGTGTTCAAAGCCTTGATTAACCTCGTGTAGAGTTTACAGGTCAC
CCTCCGCCCAGCACCTTTCTCCGAAAAATATAAGAATACATTATCCCGTC
ACGCCCCCCCCCAGGTACACCGTGCGATCTATGCAGTCCATCTACAGCGG
CAGCCAGTACGCCGGCAGCGAAGTGGGATCGTCCATCTCGAAGGCCTCGC
CCGGCGCAGGCACCGGCGTCCGGAGGGTGGTTTCGTGGCCCACGAAGACT
CGCGCGCACTACTCTCTACCGCGCCACTTGACTGTCGCGGAAAACCGCGA
CGTCGAGGATCTTGGAGGAGAGACGGTCGACGTTGGGAATCACGCCCCCG
GCGACGGCAACGGGAACGACGGCGGTTCCGGCGCTCTTAGAGGGCCCGCG
CCGGCCGACCGCACCGGAGGCACGGCCAACCATCGCGGCCGTGGCAGGGA
GACGGTGAACGGTTCCGGCGCCGGTCGCGGTCACGGCGACGCCGCTATTT
CTCCCGACGGCGCCAATGAACGCCGACGAGACAACGCCCGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1285:20449..21989-

>mRNA_L-elsbetiae_contig1285.2280.1 ID=mRNA_L-elsbetiae_contig1285.2280.1|Name=mRNA_L-elsbetiae_contig1285.2280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig1285:20449..21989- (Laminarionema elsbetiae ELsaHSoW15)
CCGCCATCGTCCGGAGAGCGACAACAGAACCGCGGGCCGCTCAAGATCCC
GCCGCTGCCCAAGATACTCTTCCGCCCGCCCGCTGCGCCCGCCGCCGCCG
CCGCTTGCACCTCCTCCGGGCAGCAACGCTCCGCCCCCGCGGCTGCCGTT
GCCGACCCCGACCCCGGCATCGGCGTCGTGCCTCCTCCATCACGCGGGAG
CGCCCACGGTGGCTACTTCGGAAGCAGCCGCGCCTTCAGCATGAACAGCC
TCGGGCGATGGTCGTCCTACGCGGGGACTCCGACGAGCACCTCCTTTTCA
CCTTCTTCCGCCGTGGCCAACCCGTTCATCGCGACCAGCCGCCATCGTCC
GGAGAGCGACAACAGAACCGCGGGCCGCTCAAGATCCCGCCGCTGCCCAA
GATACTCTTCCGCCCGCCCGCTGCGCCCGCCGCCGCCGCCGCTTGCACCT
CCTCCGGGCAGCAACGCTCCGCCCCCGCGGCTGCCGTTGCCGACCCCGAC
CCCGGCATCGGCGTCGTGCCTCCTCCATCACGCGGGAGCGCCCACGGTGG
CTACTTCGGAAGCAGCCGCGCCTTCAGCATGAACAGCCTCGGGCGATGGT
CGTCCTACGCGGGGACTCCGACGAGCACCTCCTTTTCACCTTCTTCCGCC
GTGGCCAACCCGTTCATCGCGACCAGGTACACCGTGCGATCTATGCAGTC
CATCTACAGCGGCAGCCAGTACGCCGGCAGCGAAGTGGGATCGTCCATCT
CGAAGGCCTCGCCCGGCGCAGGCACCGGCGTCCGGAGGGTGGTTTCGTGG
CCCACGAAGACTCGCGCGCACTACTCTCTACCGCGCCACTTGACTGTCGC
GGAAAACCGCGACGTCGAGGATCTTGGAGGAGAGACGGTCGACGTTGGGA
ATCACGCCCCCGGCGACGGCAACGGGAACGACGGCGGTTCCGGCGCTCTT
AGAGGGCCCGCGCCGGCCGACCGCACCGGAGGCACGGCCAACCATCGCGG
CCGTGGCAGGGAGACGGTGAACGGTTCCGGCGCCGGTCGCGGTCACGGCG
ACGCCGCTATTTCTCCCGACGGCGCCAATGAACGCCGACGAGACAACGCC
CGAGTACACCGTGCGATCTATGCAGTCCATCTACAGCGGCAGCCAGTACG
CCGGCAGCGAAGTGGGATCGTCCATCTCGAAGGCCTCGCCCGGCGCAGGC
ACCGGCGTCCGGAGGGTGGTTTCGTGGCCCACGAAGACTCGCGCGCACTA
CTCTCTACCGCGCCACTTGACTGTCGCGGAAAACCGCGACGTCGAGGATC
TTGGAGGAGAGACGGTCGACGTTGGGAATCACGCCCCCGGCGACGGCAAC
GGGAACGACGGCGGTTCCGGCGCTCTTAGAGGGCCCGCGCCGGCCGACCG
CACCGGAGGCACGGCCAACCATCGCGGCCGTGGCAGGGAGACGGTGAACG
GTTCCGGCGCCGGTCGCGGTCACGGCGACGCCGCTATTTCTCCCGACGGC
GCCAATGAACGCCGACGAGACAACGCCCGA
back to top