mRNA_L-elsbetiae_contig12843.2278.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12843.2278.1
Unique NamemRNA_L-elsbetiae_contig12843.2278.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig12843.2278.1 vs. uniprot
Match: D7G0L3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0L3_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 2.160e-110
Identity = 186/277 (67.15%), Postives = 207/277 (74.73%), Query Frame = 1 
Query:    1 VHICKAETLPGVLSDFWNLASEMAQEKYSAMAGDREYAGHALFVVARCDLLRDYGMMRHLDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSQTRSAD-----DPNSKGLARFINFSRSPYPIFGLTASSGSPVRPSPLELRSDKIARLRLDLELVYNSVAGRSTDDNVDSHGSPHGTIPSSPEEIQDNTLDWLFSLPSSSAPGGTTARSLGEGTDLEQG--GQEGXXXXXXXXXXXESKEGGQSAFATHGTSS---LTSSYEGGLVTSGVNTPEKV 801
            VHICKAETLP VLS+FW+LAS MAQEKYSAMAGDR+YA HALFV  RC LL+DY MMRHLDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSQTRS+      D N+KGL+RF+NFSR+PYP FGLTA++GS VR  P+E ++DKI  LRLDLELVYNSVAGRSTDD VDSHGSPHGTIPSSPEE+QD  LDWL+SLP    P     +   EG+  E+G  G E         XXX                    LTSSYEGGLVTSG+N+PEKV
Sbjct:  149 VHICKAETLPEVLSEFWSLASMMAQEKYSAMAGDRDYAAHALFVAPRCALLKDYAMMRHLDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSQTRSSSXXXXVDDNNKGLSRFVNFSRAPYPTFGLTAAAGSLVRSEPIE-KTDKIGHLRLDLELVYNSVAGRSTDDCVDSHGSPHGTIPSSPEEVQDKALDWLYSLP----PALQAGQEGAEGSVEERGAAGDEAVSTAAIVNXXXXXXXXXXXXXXXXXXXXXXXLTSSYEGGLVTSGLNSPEKV 420
[Close]
BLAST of mRNA_L-elsbetiae_contig12843.2278.1 vs. uniprot
Match: A0A6H5JGJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ1_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 2.220e-92
Identity = 179/307 (58.31%), Postives = 203/307 (66.12%), Query Frame = 1 
Query:    1 VHICKAETLPGVLSDFWNLASEMAQEKYSAMAGDREYAGHALFVVARCDLLRDYGMMRHLD--------------------------------KVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSQTRSAD-----DPNSKGLARFINFSRSPYPIFGLTASSGSPVRPSPLELRSDKIARLRLDLELVYNSVAGRSTDDNVDSHGSPHGTIPSSPEEIQDNTLDWLFSLPSSSAPGGTTARSLGEGTDLEQGGQEGXXXXXXXXXXXESKEGGQSAFATHGTSS---LTSSYEGGLVTSGVNTPEKV 801
            VHICKAETLP VLS+FW+LA+ MAQEKYSAMAGD +YA HALFV  RC LL++Y MMRHLD                                KVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSQTRS+      D N+KGL+RF+NFSR+PYP FGLTA++GS VR  P+E ++DKI  LRLDLELVYNSVAGRSTDD VDS G   G IPSS EE+QD TLDWL+SLP +   G   A  +G   +    G E     XXXXXXX                    LTSSYEGGLVTSG+N+PEK+
Sbjct:  137 VHICKAETLPEVLSEFWSLAAMMAQEKYSAMAGDHDYAAHALFVAPRCALLKNYAMMRHLDPSLSEEIGTCFFIASSPEGLKAKTSRFVFARDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSQTRSSSXXXXVDDNNKGLSRFVNFSRAPYPTFGLTAAAGSLVRSEPIE-KTDKIGHLRLDLELVYNSVAGRSTDDCVDSGGGGRGGIPSSLEEVQDKTLDWLYSLPPALRAGQEGA--VGGVEERGAAGDEAVSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXLTSSYEGGLVTSGLNSPEKL 440
[Close]
BLAST of mRNA_L-elsbetiae_contig12843.2278.1 vs. uniprot
Match: A0A7S2Y042_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y042_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.800e-6
Identity = 42/171 (24.56%), Postives = 76/171 (44.44%), Query Frame = 1 
Query:    1 VHICKAETLPGVLSDFWNLASEMAQ--EKYSAMAGDREYAGHALFVVARCDLLRDYGMMRHLDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSQTRSADDPNSKGLARFINFSRSPYPIFGLTASSGSPVRPSPLELRSD-------KIARLRLDLELVYNSVAGRSTDD 486
            V++  +ET+PGVL+DFW +AS   Q  +++ A AG++++     FV+ +   L D   M  L K +        DFG  + + H+HP      +Q                  S+SP+P   +T  + S  + + +   +        +I + R  +E +++  A  S  D
Sbjct:    7 VYVTASETIPGVLADFWRVASYGTQLVQRHEA-AGNKKFFKRIAFVIPQSKTLEDISSMHQLHKQIQIFKECADDFGLRMFVSHHHPKLYSTGNQAEL--------------LSQSPFPTLMITLKATSAQQFTTISKSAQNNQPDQSRIVQARAKIERLFSKPAAPSPTD 162
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12843.2278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0L3_ECTSI2.160e-11067.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGJ1_9PHAE2.220e-9258.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2Y042_9STRA1.800e-624.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12843contigL-elsbetiae_contig12843:154..3365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_007180.1
Exons4
Model size801
Cds size801
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12843.2278.1prot_L-elsbetiae_contig12843.2278.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12843 154..3365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815470.7863739-CDS-L-elsbetiae_contig12843:153..3331622815470.7863739-CDS-L-elsbetiae_contig12843:153..333Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12843 154..333 +
1691682913.2107737-CDS-L-elsbetiae_contig12843:153..3331691682913.2107737-CDS-L-elsbetiae_contig12843:153..333Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12843 154..333 +
1622815470.8000124-CDS-L-elsbetiae_contig12843:1389..15331622815470.8000124-CDS-L-elsbetiae_contig12843:1389..1533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12843 1390..1533 +
1691682913.2225547-CDS-L-elsbetiae_contig12843:1389..15331691682913.2225547-CDS-L-elsbetiae_contig12843:1389..1533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12843 1390..1533 +
1622815470.8159125-CDS-L-elsbetiae_contig12843:1972..21671622815470.8159125-CDS-L-elsbetiae_contig12843:1972..2167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12843 1973..2167 +
1691682913.2347052-CDS-L-elsbetiae_contig12843:1972..21671691682913.2347052-CDS-L-elsbetiae_contig12843:1972..2167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12843 1973..2167 +
1622815470.827955-CDS-L-elsbetiae_contig12843:3083..33651622815470.827955-CDS-L-elsbetiae_contig12843:3083..3365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12843 3084..3365 +
1691682913.2437654-CDS-L-elsbetiae_contig12843:3083..33651691682913.2437654-CDS-L-elsbetiae_contig12843:3083..3365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12843 3084..3365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12843.2278.1

>prot_L-elsbetiae_contig12843.2278.1 ID=prot_L-elsbetiae_contig12843.2278.1|Name=mRNA_L-elsbetiae_contig12843.2278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=267bp
VHICKAETLPGVLSDFWNLASEMAQEKYSAMAGDREYAGHALFVVARCDL
LRDYGMMRHLDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSQTRSADDP
NSKGLARFINFSRSPYPIFGLTASSGSPVRPSPLELRSDKIARLRLDLEL
VYNSVAGRSTDDNVDSHGSPHGTIPSSPEEIQDNTLDWLFSLPSSSAPGG
TTARSLGEGTDLEQGGQEGGGGGGGASAGEESKEGGQSAFATHGTSSLTS
SYEGGLVTSGVNTPEKV
back to top

mRNA from alignment at L-elsbetiae_contig12843:154..3365+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12843.2278.1 ID=mRNA_L-elsbetiae_contig12843.2278.1|Name=mRNA_L-elsbetiae_contig12843.2278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3212bp|location=Sequence derived from alignment at L-elsbetiae_contig12843:154..3365+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCACATTTGCAAGGCCGAGACCCTGCCGGGGGTGCTCTCGGATTTCTG
GAACCTCGCGTCGGAGATGGCTCAGGAGAAGTACTCGGCCATGGCCGGCG
ACCGCGAGTACGCCGGGCACGCGCTCTTTGTCGTCGCCCGGTGCGACTTG
CTCAGGGACTACGGGATGATGCGCCACTTGGTATGTATGTGTGTAACATA
ACACCAGCATGTAAAAGGCTTTTTCGATTTTTGTCTCCGCGGGCGCTCGA
TTCGGAGCGCGGCAGGAGTTGGTCGGGGGTCGGTGTTGGTTTGTTGTGTG
TGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTACGTGTGTGTGTGTTTG
TTTTCGTCCCATTTAGTCTGGCGTCTGTCCACCTTTTTCAGATGTGCTGT
CTTATGCATACACGTTTCGGTGTGTATTAAGCTGCACGTTTTGGTGTATC
GGTGTGCAACTAGACGGAGCAGCCGGGGTCACACACACCGGGGGGGGGGT
CAAACACCACTGGGGCTTTTTTTTCTTCTTCTCTTTTTCTTTTTTGCCCC
CAACACCGACCGCAAAATTGCTTTGTCGTGGGAAAAAGCCTCCTCGTTCG
AGGTTGCTCCACAGTTTTCCATCGAAGGGAGCGCGGCCCGAGGGTGTGCA
GAGGAAGAAGCGCACACCGATCGGCTGACCGCACGCAGAGCCTCTTGAAG
AAACAATCAATCGCTCCCTACGCGGAGCCCCCCCCCCCCCCTCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCGCCCGAGCCCGACGCC
ACGCGCTGCGGGCCGGCGCCCCCACCTCCTCCTGAAGTCGNNNNNNNNNN
GGGGGGCGAGGGGCGCACCCCCCCCCCCCCGGCCCCCCCCCCCCCGCGCC
TCTTGAAAAAACAATGACGGGCCCCCCGCGGGGGGCCCCCCCCCCCCCCC
CCCCTCCCCCTCCTCGCAGCTTCCGCGCGCGCGAGTCTGATCCTTTTAAG
AGGCGAAAACCCGATAGGAGCGTGCACGGCCCCTTGAATCAAGAGCTTTT
TGTCCTTCTACGGATTTGAGAGATCAGCCAAACGGCATGCATGAGAATGA
GCACTACCCCCCTGGCTCTGACCCCCCCCCGGCTCCGCCTCTTGCTGCCC
CCCCCCGCTCTCGCTCTATATCCCCCCTCCCCCCTGCCCCCCACTCTCTT
CCTCTCTGCACCCCTTTCTGCACCCCCCGCGTGAAGGACAAGGTCCTCGA
CTTCTGTTCGGGGGGCTGCAGTGATTTCGGGCGCACGGTGACGCTCCAGC
ACTACCACCCGGACTTCGTGCTCCCGCCCTCCCAGACCCGCAGCGCCGAC
GACCCCAACAGCAAGGGCCTCGCCCGCTTCGTGAGTGAGACTGAGAGACT
TGAGCGGGATGGAGGAGAGTTGCCGGGTTGTTTTTTTTTTACTTCTCCTT
TTCCATCAGACGCTAGTACTCTGTAGTAGGCCCCGAGGCGGACGGACAAC
AAAGTGGCCCACTCCTCTGTGCGTTGATGAAGCCTTGAACCGTTGAAGCG
GCGGCGCAAAGGGTCGCGATCTGTGGGAGTGAGCGTCGTATTATTTTTCT
GGGCCACAAAACAAGCCGTCCGTGTTCTCTGCTCCCCGCCGACCCCCCCC
CCCCCCCCGCACACACACTCTCTCTCTCTCTCTCTGAAACCCCTGCTGCC
TCTTTGATTCATTGTTTTGTTTGCACATATTTACCATACATGCATGCATA
CATACATACATGCATACATACATACATACATACATACATACCGATGCTGG
TGGTTTCTATCTGTCGCAGATCAACTTTTCCCGGTCGCCGTACCCGATTT
TCGGCCTGACGGCCTCGTCCGGGAGCCCCGTGCGCCCGTCGCCCCTCGAG
CTCCGCTCGGACAAGATCGCCAGACTCAGGTTGGACCTGGAGCTGGTGTA
CAACTCGGTGGCGGGGCGCAGCACGGACGACAACGTGGATTCGCACGGGT
CGCCCCACGGGACGGTGAGAGAGGGGGCAGAGTCGGTCGCTGCTGCTGCT
GCTGTGTGTGGAGAGCTACAACAAACAGTGTGCATTTACTTGTATGATAC
TTATGGTACATTTTACAAGAGGGTGGTATCTTGGATGGTGACGCAGAGAG
GCAGGGAGGAAGAAGGGACCACAGAGTCGACAGGGAAAAGGGGAGGTTGA
CCTGGCTGCTGCTGTTGTGTTTGGTCGTGGAGGGGCACAGGAGGAGGTAT
TTTCTTTTCAGAGACAAGTACGTGGAGACGACATGATCCTCATCGCTCAT
CACGGCGCCGCAGGGGTAGTCACGAGCGAAGGGTTGGTTTTGCCAGTCAG
CCGCAAGGAAAAAATTTCACGAGCGAGAGAGGTAGGTATACAAGGCGAGA
AGCAGCATGGCCTGTTATCTTTTCATGCGGGAAAATAAGGCATAGAGAGG
GAGGTAAACTTTGATGTCTTCAGTGAGAGCTGGGGGTGGAGATGCGGAGG
AGAGAGAGCTCGAGAACATGGGGCATGCTTCCATCTTTTTGTGGGCATTG
GCGGCCGGAGCTCCTGGCAGCACAGAAACGCGTAAAGCATCCCGGAGCCT
CCTTTACCAAGAGCTCTTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCTGT
CTGTCCTTTGGCTTCCAGCGGCGGAACCTTTCTTTCCTTTCTTAGTAGGC
CTTGACTCCTTAGGCGATTTGCGAAATTGCGGAGGAACAAAAGTCCTTAC
CATACTGGGTTTAGTGTAGAAAAAAAGAAGGTGTAGGTAAAAGGAAAAAA
AAGGAGCATAACGAGTCAAGGCCTATTTCTTAGTTCTCTCAATAATTCTT
GTTTCTCATCATTCTTGTTCTCATCATTCTTGTTTCTCATCATTCTTGTT
TCCGACCACAAAAAAACAAAAAAAAAACAGATTCCATCATCGCCCGAGGA
GATTCAAGACAACACGCTGGACTGGCTGTTCAGCTTGCCCTCGTCGTCAG
CTCCCGGAGGGACTACTGCGAGAAGTCTGGGGGAGGGCACAGACCTCGAG
CAAGGAGGACAAGAAGGAGGAGGAGGCGGCGGCGGTGCCTCCGCTGGCGA
AGAGAGCAAGGAAGGGGGGCAATCCGCTTTCGCGACTCACGGGACCTCCT
CCCTGACCAGCTCGTACGAGGGGGGCCTGGTGACGAGCGGGGTCAACACG
CCGGAAAAGGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12843:154..3365+

>mRNA_L-elsbetiae_contig12843.2278.1 ID=mRNA_L-elsbetiae_contig12843.2278.1|Name=mRNA_L-elsbetiae_contig12843.2278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1602bp|location=Sequence derived from alignment at L-elsbetiae_contig12843:154..3365+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCACATTTGCAAGGCCGAGACCCTGCCGGGGGTGCTCTCGGATTTCTG
GAACCTCGCGTCGGAGATGGCTCAGGAGAAGTACTCGGCCATGGCCGGCG
ACCGCGAGTACGCCGGGCACGCGCTCTTTGTCGTCGCCCGGTGCGACTTG
CTCAGGGACTACGGGATGATGCGCCACTTGGTGCACATTTGCAAGGCCGA
GACCCTGCCGGGGGTGCTCTCGGATTTCTGGAACCTCGCGTCGGAGATGG
CTCAGGAGAAGTACTCGGCCATGGCCGGCGACCGCGAGTACGCCGGGCAC
GCGCTCTTTGTCGTCGCCCGGTGCGACTTGCTCAGGGACTACGGGATGAT
GCGCCACTTGGACAAGGTCCTCGACTTCTGTTCGGGGGGCTGCAGTGATT
TCGGGCGCACGGTGACGCTCCAGCACTACCACCCGGACTTCGTGCTCCCG
CCCTCCCAGACCCGCAGCGCCGACGACCCCAACAGCAAGGGCCTCGCCCG
CTTCGACAAGGTCCTCGACTTCTGTTCGGGGGGCTGCAGTGATTTCGGGC
GCACGGTGACGCTCCAGCACTACCACCCGGACTTCGTGCTCCCGCCCTCC
CAGACCCGCAGCGCCGACGACCCCAACAGCAAGGGCCTCGCCCGCTTCAT
CAACTTTTCCCGGTCGCCGTACCCGATTTTCGGCCTGACGGCCTCGTCCG
GGAGCCCCGTGCGCCCGTCGCCCCTCGAGCTCCGCTCGGACAAGATCGCC
AGACTCAGGTTGGACCTGGAGCTGGTGTACAACTCGGTGGCGGGGCGCAG
CACGGACGACAACGTGGATTCGCACGGGTCGCCCCACGGGACGATCAACT
TTTCCCGGTCGCCGTACCCGATTTTCGGCCTGACGGCCTCGTCCGGGAGC
CCCGTGCGCCCGTCGCCCCTCGAGCTCCGCTCGGACAAGATCGCCAGACT
CAGGTTGGACCTGGAGCTGGTGTACAACTCGGTGGCGGGGCGCAGCACGG
ACGACAACGTGGATTCGCACGGGTCGCCCCACGGGACGATTCCATCATCG
CCCGAGGAGATTCAAGACAACACGCTGGACTGGCTGTTCAGCTTGCCCTC
GTCGTCAGCTCCCGGAGGGACTACTGCGAGAAGTCTGGGGGAGGGCACAG
ACCTCGAGCAAGGAGGACAAGAAGGAGGAGGAGGCGGCGGCGGTGCCTCC
GCTGGCGAAGAGAGCAAGGAAGGGGGGCAATCCGCTTTCGCGACTCACGG
GACCTCCTCCCTGACCAGCTCGTACGAGGGGGGCCTGGTGACGAGCGGGG
TCAACACGCCGGAAAAGGTGATTCCATCATCGCCCGAGGAGATTCAAGAC
AACACGCTGGACTGGCTGTTCAGCTTGCCCTCGTCGTCAGCTCCCGGAGG
GACTACTGCGAGAAGTCTGGGGGAGGGCACAGACCTCGAGCAAGGAGGAC
AAGAAGGAGGAGGAGGCGGCGGCGGTGCCTCCGCTGGCGAAGAGAGCAAG
GAAGGGGGGCAATCCGCTTTCGCGACTCACGGGACCTCCTCCCTGACCAG
CTCGTACGAGGGGGGCCTGGTGACGAGCGGGGTCAACACGCCGGAAAAGG
TG
back to top