mRNA_L-elsbetiae_contig1284.2277.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1284.2277.1
Unique NamemRNA_L-elsbetiae_contig1284.2277.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1284.2277.1 vs. uniprot
Match: D7FT33_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT33_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 2.910e-70
Identity = 152/245 (62.04%), Postives = 168/245 (68.57%), Query Frame = 1 
Query:   37 KLDLTVNFIDLDELENSVTAMEGNRHLGDLYMMGNPCQSWPGFEAYVIARLPQLERLDGKEITRTDRIKAQQRLPALREEIAPLAEEVRQRKRAERQATR-----------EGDRDNSTESGAGAGGHPPAPGKSDGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAIGDGEEE-MTKHTPEVRTAIYREMAEQKKEKEDRQRENLPKDRDFELEQVGLLGGRGGRPASEKPRALSGSA 735
            KLDLTVNF+D+DELENSV+AMEGNRHL DLYMMGNPCQSW GFEAY IARLPQLERLDGKEITRTDRIKAQQRLPALR+EI  LA+EVRQRK AE++A +             D ++S   G  A  HP AP KSDGA                                 +  G GEEE +TKHTPE RTAIYREMAEQK+EKE+RQ+ENLPKDR+FELEQ  L   RG  PASEKPRA S SA
Sbjct:   94 KLDLTVNFVDMDELENSVSAMEGNRHLKDLYMMGNPCQSWAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKLAEKEAAKLESQEKHDGNNNSDNEHSRGGGVDADDHPTAPAKSDGATDQPGHDARPSGTDK------------------SCDGKGEEEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELEQTRLPRWRG--PASEKPRARSDSA 318
[Close]
BLAST of mRNA_L-elsbetiae_contig1284.2277.1 vs. uniprot
Match: A0A7S3HTQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTQ6_9STRA)

HSP 1 Score: 147 bits (371), Expect = 6.270e-35
Identity = 96/223 (43.05%), Postives = 126/223 (56.50%), Query Frame = 1 
Query:    1 QVEGLQSCEFLNKLDLTVNFIDLDELENSVTAMEGNRHLGDLYMMGNPCQ-SWPGFEAYVIARLPQLERLDGKEITRTDRIKAQQRLPALREEIAPLAEEVRQRKRAERQATREGDRDNSTESGAGAGGHPPAPGKSDGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAIGDGEEEMTKHTPEVRTAIYREMAEQKKEKEDRQRENLPKDRDFELEQ 666
            ++EGL +CEFL KLDLTVNFIDLDEL++S+  ++   +L DLYMMGNP + +WP F+ YVIA+LPQL+ LDG EITR+ +I+A+Q+LPAL  E+  LA  VR  KRA+   T +                 PAP  +  A                                     D  +EMT +TPE R  IY+E+A+QKKEKEDR   N PK R++E EQ
Sbjct:  105 KIEGLHNCEFLGKLDLTVNFIDLDELKDSIDHLQSRTNLHDLYMMGNPSEHNWPNFKHYVIAKLPQLQNLDGTEITRSMQIQARQKLPALEIELEKLASAVRTEKRAKAIITEQAK---------------PAPSVTTYA---------------------NGVTIEDVDEEAEGSNDQSQEMTDNTPETRVRIYQELAQQKKEKEDRANVNAPKKRNYEKEQ 291
[Close]
BLAST of mRNA_L-elsbetiae_contig1284.2277.1 vs. uniprot
Match: A0A835Z7F5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7F5_9STRA)

HSP 1 Score: 140 bits (352), Expect = 4.170e-33
Identity = 96/221 (43.44%), Postives = 115/221 (52.04%), Query Frame = 1 
Query:    4 VEGLQSCEFLNKLDLTVNFIDLDELENSVTAMEGNRHLGDLYMMGNPCQS-WPGFEAYVIARLPQLERLDGKEITRTDRIKAQQRLPALREEIAPLAEEVRQRKRAERQATREGDRDNSTESGAGAGGHPPAPGKSDGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAIGDGEEEMTKHTPEVRTAIYREMAEQKKEKEDRQRENLPKDRDFELE 663
            +EGL SCE LNKLDLTVNFIDLD+L+ S+  +    +L DLYMMGNP Q+ W GF AYV   L QLERLDG+EITR+ RI AQQ+LPAL+ E         Q ++ E+ A                                                                     EE T HTPEVRT IYRE+AEQK+EK++RQRENLPK+RDFE E
Sbjct:   83 IEGLGSCEMLNKLDLTVNFIDLDKLQESIEHLASCPNLKDLYMMGNPAQANWEGFAAYVTGILSQLERLDGREITRSMRITAQQQLPALKAEY--------QAQKLEQTA---------------------------------------------------------------------EETTPHTPEVRTQIYRELAEQKREKDERQRENLPKERDFEQE 226
[Close]
BLAST of mRNA_L-elsbetiae_contig1284.2277.1 vs. uniprot
Match: A0A6A3PCZ5_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3PCZ5_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.580e-28
Identity = 91/236 (38.56%), Postives = 120/236 (50.85%), Query Frame = 1 
Query:    1 QVEGLQSCEFLNKLDLTVNFIDLDELENSVTAMEGNRHLGDLYMMGNPCQS-WP-GFEAYVIARLPQLERLDGKEITRTDRIKAQQRLPALREEIAPLAEEVRQRKRAERQATREGDRDNSTESGAGAGGHPPAPGKSDGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAIGDGEEEMTK-------------HTPEVRTAIYREMAEQKKEKEDRQRENLPKDRDFELE 663
            ++EGLQSCEFLNKLDLTVNF+D D LE S+  ++  RHL +LYM+GNPCQ+ W  GF  +V+A LPQLE LDGKEI R+DRIKA Q     ++ +   A++VR +K  ER+  +E +                                                        G A    EE+M K             +TP  R  +Y EMAEQK+E+E R+REN PK+R+ E E
Sbjct:   42 KIEGLQSCEFLNKLDLTVNFVDFDTLEESIDHLKPLRHLRELYMLGNPCQANWETGFREFVVASLPQLENLDGKEIHRSDRIKALQVFRDRQKFVRSEAKKVRAKKELERKEDKESE--------------------------------------------------VIEVVGGEATDISEEQMEKKKKSVMASTEKVPYTPHTRREMYLEMAEQKEEEEARRRENQPKERNTEAE 227
[Close]
BLAST of mRNA_L-elsbetiae_contig1284.2277.1 vs. uniprot
Match: A0A7S4E455_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E455_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.660e-28
Identity = 64/105 (60.95%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:    1 QVEGLQSCEFLNKLDLTVNFIDLDELENSVTAMEGNRHLGDLYMMGNPCQS-WPGFEAYVIARLPQLERLDGKEITRTDRIKAQQRLPALREEIAPLAEEVRQRK 312
            ++EGL  CEFLNKLDLTVNF+D+DELE+S+  +    HL DLYMMGNPC++ WPGF+ YVIARLPQL+ LDG+ ITR+ +I A+Q+LP L  E+  LA+E R  K
Sbjct:  104 KIEGLDKCEFLNKLDLTVNFVDVDELESSMDHLADREHLKDLYMMGNPCEANWPGFKNYVIARLPQLQFLDGEAITRSMQIIAKQQLPKLAVELRSLAQEKRDEK 208
[Close]
BLAST of mRNA_L-elsbetiae_contig1284.2277.1 vs. uniprot
Match: A0A6A3GCM2_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GCM2_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.130e-28
Identity = 91/236 (38.56%), Postives = 119/236 (50.42%), Query Frame = 1 
Query:    1 QVEGLQSCEFLNKLDLTVNFIDLDELENSVTAMEGNRHLGDLYMMGNPCQS-WP-GFEAYVIARLPQLERLDGKEITRTDRIKAQQRLPALREEIAPLAEEVRQRKRAERQATREGDRDNSTESGAGAGGHPPAPGKSDGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAIGDGEEEMTK-------------HTPEVRTAIYREMAEQKKEKEDRQRENLPKDRDFELE 663
            ++EGLQSCEFLNKLDLTVNF+D D LE S+  ++  RHL +LYM+GNPCQ+ W  GF  +V+A LPQLE LDGKEI R+DRIKA Q     ++ +   A +VR +K  ER+     + D   E                                                  G A    EE++ K             +TP  R  +Y EMAEQK+E+E R+REN PK+R+ E E
Sbjct:   70 KIEGLQSCEFLNKLDLTVNFVDFDTLEESIDHLKPLRHLRELYMLGNPCQANWESGFREFVVASLPQLEILDGKEIHRSDRIKALQVFRDRQKFVRSEARKVRAKKELERKEENPQEEDEVLE-----------------------------------------------VVGGEATDISEEQVEKKKKSVMASTEKVPYTPHTRREMYLEMAEQKEEEEARRRENQPKERNTEAE 258
[Close]
BLAST of mRNA_L-elsbetiae_contig1284.2277.1 vs. uniprot
Match: A0A7S1GCM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GCM5_9STRA)

HSP 1 Score: 118 bits (295), Expect = 8.990e-27
Identity = 56/97 (57.73%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 QVEGLQSCEFLNKLDLTVNFIDLDELENSVTAMEGNRHLGDLYMMGNPCQSWPGFEAYVIARLPQLERLDGKEITRTDRIKAQQRLPALREEIAPLA 291
            ++EGL +CEFL+KLDLTVNF+D+  LE SV  +    HL +L+M+GNPC  WPG  AYV A LPQL++LDGK+IT+T+RI A+Q+LP L +E+  LA
Sbjct:  101 RIEGLGACEFLDKLDLTVNFVDVHALEASVAHLAPLSHLRELHMVGNPCMDWPGARAYVAASLPQLQQLDGKDITKTERILARQKLPGLVDELRRLA 197
[Close]
BLAST of mRNA_L-elsbetiae_contig1284.2277.1 vs. uniprot
Match: A0A662WUB0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUB0_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.670e-23
Identity = 61/106 (57.55%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:    1 QVEGLQSCEFLNKLDLTVNFIDLDELENSVTAMEGNRHLGDLYMMGNPCQS-WP-GFEAYVIARLPQLERLDGKEITRTDRIKAQQRLPALREEIAPLAEEVRQRK 312
            ++EGLQ CEFLNKLDLTVNF+D D LE+S+  ++  +HL +LYM+GNPCQS W  GF  YVIA LPQL+ LDGKEI R+DRIKA Q     ++ +   A++V  RK
Sbjct:   80 KIEGLQCCEFLNKLDLTVNFVDFDTLEDSIDHLKPLQHLRELYMLGNPCQSDWETGFREYVIASLPQLQLLDGKEIQRSDRIKALQVFRVRQQYVRKEAKKVLDRK 185
[Close]
BLAST of mRNA_L-elsbetiae_contig1284.2277.1 vs. uniprot
Match: A0A7J6T9Q0_PEROL (Uncharacterized protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6T9Q0_PEROL)

HSP 1 Score: 103 bits (258), Expect = 5.000e-23
Identity = 51/106 (48.11%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:   10 GLQSCEFLNKLDLTVNFIDLDELENSVTAMEGNRHLGDLYMMGNPCQSWPGFEAYVIARLPQLERLDGKEITRTDRIKAQQRLPALREEIAPLAEEVRQRKRAERQ 327
            GL+ CE L KLDLTVNFID++ L++S+T +E N +L DLY++GNPC  WP    YV+ARLP L +LDG  +T ++RI+A++ LP L +E+   ++   ++K  ER+
Sbjct:    1 GLERCESLRKLDLTVNFIDIENLKDSITNLECNYNLEDLYLLGNPCMDWPKARKYVVARLPGLLQLDGTLVTPSERIQAKRDLPMLEKELEKSSDYSIKKKNYERE 106
[Close]
BLAST of mRNA_L-elsbetiae_contig1284.2277.1 vs. uniprot
Match: A0A7S1ZEY3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZEY3_TRICV)

HSP 1 Score: 111 bits (278), Expect = 8.670e-23
Identity = 85/231 (36.80%), Postives = 112/231 (48.48%), Query Frame = 1 
Query:    1 QVEGLQSCEFLNKLDLTVNFIDLDELENSVTAMEGNRHLGDLYMMGNPC------------------QSWPGFEAYVIARLPQLERLDGKEITRTDRIKAQQRLPALREEIAPLAEEVRQRKRAERQATREGDRDNSTESGAGAGGHPPAPGKSDGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAIGDGEEEMTKHTPEVRTAIYREMAEQKKEKEDRQRENLP 639
            ++EG+  CEFL KLD+T+NFIDLDELE+S+  +   R L +L++MGNPC                    W G   YVIARL QL  LDGKE+TR++RI+A+Q+L  L  E+  LA E RQ K AE+                       A GK                                      AI D  EE+T+H+PEVR  + REMA QK EKE++++ N P
Sbjct:   60 KIEGIGHCEFLKKLDMTLNFIDLDELEDSIDNLANCRSLEELFLMGNPCVWNDEGDAEQGGEDVKKITGWIGCRMYVIARLQQLTLLDGKEVTRSERIRARQKLAQLTLELRHLAHECRQNK-AEKSKN--------------------ASGKDQ-----------------------------------QAIDD--EELTEHSPEVRAELSREMALQKAEKEEQEKANQP 232
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1284.2277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT33_ECTSI2.910e-7062.04Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A7S3HTQ6_9STRA6.270e-3543.05Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A835Z7F5_9STRA4.170e-3343.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6A3PCZ5_9STRA2.580e-2838.56Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
A0A7S4E455_9STRA2.660e-2860.95Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A6A3GCM2_9STRA4.130e-2838.56Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
A0A7S1GCM5_9STRA8.990e-2757.73Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A662WUB0_9STRA1.670e-2357.55Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A7J6T9Q0_PEROL5.000e-2348.11Uncharacterized protein (Fragment) n=1 Tax=Perkins... [more]
A0A7S1ZEY3_TRICV8.670e-2336.80Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1284contigL-elsbetiae_contig1284:7560..14322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.5
Seed ortholog evalue1.6e-53
Seed eggNOG ortholog2880.D7FT33
KEGG koko:K19753
Hectar predicted targeting categoryother localisation
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-04_002660.3
Exons8
Model size1559
Cds size828
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1284.2277.1prot_L-elsbetiae_contig1284.2277.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1284 11479..14226 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815470.6091568-UTR-L-elsbetiae_contig1284:7559..77391622815470.6091568-UTR-L-elsbetiae_contig1284:7559..7739Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1284 7560..7739 -
1691682913.1057453-UTR-L-elsbetiae_contig1284:7559..77391691682913.1057453-UTR-L-elsbetiae_contig1284:7559..7739Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1284 7560..7739 -
1622815470.6733875-UTR-L-elsbetiae_contig1284:8307..84751622815470.6733875-UTR-L-elsbetiae_contig1284:8307..8475Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1284 8308..8475 -
1691682913.1219134-UTR-L-elsbetiae_contig1284:8307..84751691682913.1219134-UTR-L-elsbetiae_contig1284:8307..8475Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1284 8308..8475 -
1622815470.6885421-UTR-L-elsbetiae_contig1284:9208..93611622815470.6885421-UTR-L-elsbetiae_contig1284:9208..9361Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1284 9209..9361 -
1691682913.1319113-UTR-L-elsbetiae_contig1284:9208..93611691682913.1319113-UTR-L-elsbetiae_contig1284:9208..9361Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1284 9209..9361 -
1622815470.6985037-UTR-L-elsbetiae_contig1284:10576..106871622815470.6985037-UTR-L-elsbetiae_contig1284:10576..10687Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1284 10577..10687 -
1691682913.143241-UTR-L-elsbetiae_contig1284:10576..106871691682913.143241-UTR-L-elsbetiae_contig1284:10576..10687Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1284 10577..10687 -
1622815470.708745-UTR-L-elsbetiae_contig1284:11455..114781622815470.708745-UTR-L-elsbetiae_contig1284:11455..11478Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1284 11456..11478 -
1691682913.153115-UTR-L-elsbetiae_contig1284:11455..114781691682913.153115-UTR-L-elsbetiae_contig1284:11455..11478Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1284 11456..11478 -
1622815470.7584724-UTR-L-elsbetiae_contig1284:14226..143221622815470.7584724-UTR-L-elsbetiae_contig1284:14226..14322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1284 14227..14322 -
1691682913.2007937-UTR-L-elsbetiae_contig1284:14226..143221691682913.2007937-UTR-L-elsbetiae_contig1284:14226..14322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1284 14227..14322 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815470.7193527-CDS-L-elsbetiae_contig1284:11478..117061622815470.7193527-CDS-L-elsbetiae_contig1284:11478..11706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1284 11479..11706 -
1691682913.163414-CDS-L-elsbetiae_contig1284:11478..117061691682913.163414-CDS-L-elsbetiae_contig1284:11478..11706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1284 11479..11706 -
1622815470.7295933-CDS-L-elsbetiae_contig1284:12370..127691622815470.7295933-CDS-L-elsbetiae_contig1284:12370..12769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1284 12371..12769 -
1691682913.17577-CDS-L-elsbetiae_contig1284:12370..127691691682913.17577-CDS-L-elsbetiae_contig1284:12370..12769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1284 12371..12769 -
1622815470.7392516-CDS-L-elsbetiae_contig1284:13168..133151622815470.7392516-CDS-L-elsbetiae_contig1284:13168..13315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1284 13169..13315 -
1691682913.1843624-CDS-L-elsbetiae_contig1284:13168..133151691682913.1843624-CDS-L-elsbetiae_contig1284:13168..13315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1284 13169..13315 -
1622815470.7489972-CDS-L-elsbetiae_contig1284:14172..142261622815470.7489972-CDS-L-elsbetiae_contig1284:14172..14226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1284 14173..14226 -
1691682913.1926923-CDS-L-elsbetiae_contig1284:14172..142261691682913.1926923-CDS-L-elsbetiae_contig1284:14172..14226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1284 14173..14226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1284.2277.1

>prot_L-elsbetiae_contig1284.2277.1 ID=prot_L-elsbetiae_contig1284.2277.1|Name=mRNA_L-elsbetiae_contig1284.2277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=276bp
MEGNRHLGDLYMMGNPCQSWPGFEAYVIARLPQLERLDGKEITRTDRIKA
QQRLPALREEIAPLAEEVRQRKRAERQATREGDRDNSTESGAGAGGHPPA
PGKSDGAAAPATAAEEHEEKMARASGGGGGGGGEKGGGNGAAIGDGEEEM
TKHTPEVRTAIYREMAEQKKEKEDRQRENLPKDRDFELEQVGLLGGRGGR
PASEKPRALSGSATRGSSSSVSRKRGRGVRVWGVQGGGRGDVSGGRRAAA
AAAAAAAAAAVAAETSCSRWRCRNT*
back to top

mRNA from alignment at L-elsbetiae_contig1284:7560..14322-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1284.2277.1 ID=mRNA_L-elsbetiae_contig1284.2277.1|Name=mRNA_L-elsbetiae_contig1284.2277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6763bp|location=Sequence derived from alignment at L-elsbetiae_contig1284:7560..14322- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGAAGGCCTGCAGTCCTGCGAGTTTCTCAACAAGCTGGACCTGAC
GGTGAACTTCATCGACCTGGACGAGCTGGAGAACAGCGTAACCGCCATGG
AGGGGAACCGACACCTCGGAGACCTGTACATGATGGGCAACCCATGCCAG
GTGCGCAGCCGGCGGGCCCGCGCGCGCACGTCTCTTCTCTCTCTCTCTCC
CTCTCTCTCTCCTTCTCTATCTCTTTCCGACTCTCTCTCTCTTTCTGTCT
GTCTATCTGTCTGTCTGTCTCTGCCTCTCTCGTGCGCGCGCCGGCAGCGG
CTTGTTGCACTGCTCTAGCCCGCCCGAACTCGTCTCGCGAACAAAGCCGA
GTGCACACATCTCACTGCTCTGCTCTTCCCCGCTTGCTCGTTTTTTTCGT
CACATCTAAAAAGACTTCAGCCGTCTACATACGCCCAGCTTGTGAAGCAA
GCCTTTCCTAGAGAGACCCACTAACGTTCTCGTGTGTTGTTCGTGGCCGG
CTTGAGTTCATGTAAACATGGCGGCCGTTTATGTAAATTTGGCGTCTTCG
AATAGGTGGGTTGCGTCTGCGAAGCCCTATGATGCGTGCTTGTAGACCGA
CGGTACCCCATAAGCGCCTTTTGTTCTGGCCATCAGCGCTCCCCCGCCTT
GGGCCGGGCCCATGCTCTCTTTCTGCGCCCATGCTCTTCCTATGAGAGGC
GCGCGCAAGCTCCCGCTGCTTCTCGCCTGCCTCGCCCTCTCCCCCTGTGC
TCACGCGATGCGATGCCATGCGATTTGGTGCGTATGTATATTGTTATTGT
TGTTGTTGTTGTTTTACGCATTGCGCATGTAGCCTCTTTTCCAAAACCTA
GCGCCCGTGGTGGTCACAAGACGGGGCATAAAACCTAACTCCGCGCGGAC
GGCAAAAAAGAGGGGGGATTGTTGGTGTACTCACGCTGGGAAAATGAAGG
GTGACGCGTGAGTCCAATCCTGTCCAATCCTGTCTTGTCTTGTCCTGTGC
TGTGAAGTCGTGGCCGGGGTTCGAGGCGTACGTGATAGCACGCCTGCCGC
AGCTGGAGCGCCTGGACGGCAAGGAGATCACCCGAACAGACAGAATAAAG
GCCCAGCAGCGGCTCCCCGCCCTTCGCGAAGAGATCGCCCCCCTGGCTGA
AGAGGTGCGTGCGGTTCCCTCCGTACTTCTCTTCTTTTCTCCCCCGTCAA
CCTTTCGCGTGAACGGCGGCGGTATGCCTCTCGTTTTCCGCGTGAACGCT
GCGCTCAGTTTAAACCTATCCTGCTGCTTTGGTGGCACTTTTTTTTCTGC
TTTTTTCTCTGTCGCTCTCTTCCACTGTATGTTTCTCCTCTCTCTCTCTC
TCTCTCTCTCTCTCTGCTGCTGCTTGCTCTCGATCCAGCCTGCGCCAGAC
CAAGCAGGAGACTACTGTCTTCATCCCGCGTGTATAACCTAGTATATATT
ATAACAAGGCCGGGTTGGAGGCATCGATCGTTTAGCGTCTCTTCCTTCTG
CCTCCCATCATAATTCCTACGTTACAACACCCGTCTGTCTGCCAATCCCT
CAGGTAAGACAGCGCAAGCGCGCCGAGAGACAGGCGACTAGGGAGGGCGA
TCGAGACAACAGCACCGAGAGCGGCGCCGGCGCCGGCGGCCACCCCCCGG
CCCCGGGGAAGAGCGATGGCGCCGCAGCACCGGCAACGGCGGCGGAGGAA
CACGAGGAGAAGATGGCAAGGGCCAGCGGCGGTGGCGGCGGCGGCGGCGG
TGAAAAAGGTGGCGGCAACGGAGCGGCGATCGGAGACGGAGAAGAGGAGA
TGACGAAGCACACCCCGGAGGTGCGGACGGCGATCTACCGCGAGATGGCG
GAGCAGAAGAAGGAGAAGGAGGACCGGCAGCGGGAAAACTTGCCCAAGGA
CCGCGACTTTGAGCTCGAGCAGGTAGGGCTGCTAGGCGGGCGGGGGGGCA
GGGTGACAAGGGAAAAGTATCGGGTGTGAGGAGGAGAAGGAGGAGGAAGA
GGAGGAGGAGGAGCGCATTAATCCTCGTGGCGTTGGCACCTTACATACCC
TCGAACGCCTGCTGCATTTCGCCGACGAATGGCCCGTCGAGTTTTTTCAC
AGAGGCAGGGGCACCGTGGTTGGAACGGAACGGGAGTGCATCTGGGGGGT
ACTATGTTTGTGGCCAGTCGTCCACCGGCGAGTTTTTGGTTATGCGGGGC
TTTTCGGATGGTGGTTTTCTGCTGATGACGGGTTTGTCGACCGCAGCGCT
TGCTTGGATTTTGTTTCCCCTTCGCGGCCGGGGGTGTCGTGATTTGTGTC
GCGGCGGCGACAGGGCTTCCCGCCTCGCGGTCGGCAAAACTGGCTTTTGT
AGTTGCCGCCCTCGAAAGTACAAGCTAGTTAGGCCGCCGCCCTGTGTGAC
CGGAGGAAAAGCGAACGGCTCCATTGCTTCCGTTTTGCAGCGCGTGCGTG
TTTTGTCCTCTGCCCGTGTAACTTGAATCCTATCCTATATCCTACATACA
TACATATAGTATGGCTCCACACCCGCTCGGCATGTATGTATAGGCCAGAT
GCCAACTATTTTTATTTATTCTGGTGCGCTTGGCCTGGTCTTTGCAGGCT
GCTGCGGTGGAGAGAGCCCGCGAGCGAGAAGCCGAGGGCGCTATCAGGCA
GTGCAACGAGGGGAAGCTCGAGTTCCGTTTCGAGGAAACGCGGCCGGGGG
GTTCGGGTCTGGGGGGTGCAGGGGGGGGGCAGAGGGGATGTGTCGGGCGG
GCGGCGGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGTAG
CAGCGGAGACATCGTGCTCGAGGTGGCGGTGCCGAAATACCTAGACAGCT
CTTTGATTGACTTGGACGTCCACCCGCACTACGTCAGCATCGTCATCAAG
GGCAAGGTATGCGTCTAGACAGCTTAGCTCGCTGTCCCTACCCCATGCTG
CTGCCCCCTCCCCCCTCCTCAAAGCGTGACGTAAGAAGGGGCGGCTATTG
TAACGCTACCCCGCGCGGTACGGCAAAAAACGAAGATGGGAGTTATCGAT
TGAATGGCTGCATGTTTTCTGTGTTTTAGCCGCCCTCGCCGAGTTTTTCA
TTTTGTGCAGGCGTGTTGGTAGAGGGGGGGCGGCTCGTTTAGGTGGGGTT
AGCCCGTTGTTTCGGGTGGGGTTAGCCGGTTCGGGCAGATAGGGCATCAG
AAGAAAGACGCCGAATAATTTGATCGGCCGCATCGGCAATGGTATGGGGA
GCTATGTCGTGCTGCGGCGGTGTGTGGACGTTTTCGCTGCCCTGCTGCCG
TGCGTGCGTGCGTTCATCCGGGGCTTAGGCCTTTCGCTTCATAGCGCTTT
CCACGGATCCCCCCCACCACCACCACCGGTGAAAAATACAGGTAATTCAG
TCGGCAAATGATGAAGCACGCACGCACCCCGTGCGCTGCCGTATCATCAC
GAGCTACTGTTCGTCGTGCGCGCATCCTTGTCCCTGCAACTCACGCCCGT
ATCATCCACGCCTCATCTCTTTCACGTACGTACTGCACTTTTCGTTACAG
TATGTACGTATTTTATGCATGAAAATCGTTGTATCTATTGCCCCCCTTCA
TCTCGTTATTGTACATACTGTATGTATGTATATAGGTGTTGCGCCTGAGT
CTCCAAGCGGAGGTGAAGGCCGGAGAGGCTAAGGCAAGGCGGAGCAAGAC
GACGGGCAGCCTCGTGGTCACCATGCCCAAGGTCGACCCCCACCAGGTTA
GAACCATAAATACTATTGGTACTTTGTTTTTGTGGTTTTTTTTTCACATT
TATTTCCAGTGCTCGATGGGCTCCTTGTGTCACGAGGGCATCTTGCCAGA
ATATTGAACCGCGGTCACACAGAAGGGTTCATTTTACCCCGAGGCTCTCA
CTGCCCCGCTTCTGCGATGCCTGCCTATTTAGGAGTTTTGTCGCGATAAG
GGTTCAGCCTCCCGTCCCTTTCCCTCGTCAACTGTGAGATCGAGTTTACT
GCTGTAGCACGTTAAACAGCACGCTTCAACAGTAGGTACAGCAGCAGTGG
CAGCAGCTGTGCTCTTGTCGTGCACAGATGGCGCCACCACTTAAGAAGAG
CTTAGCATTAGTTAAGAACTCCGGGCTCCGTTGTATGTTCAAAGCACAAG
TAAAGAACATGCGCTCACCTGAGATGCCCAGAAAAGAGCCTACAAAGCAT
ACATAAAACCTGTGTAAAGATAAGTTGGCTTCATCACAGAAAAAGACGAA
CAGAGCCTTGGGACAAAATCAGAGATGCATGCGCAAGTGGTAGCGCCACC
CACACGCGCGTCTGTGTGTGTGTGTGTGTGTAGACGAAGCATACGGGCAA
CTGCACCCCGAGACCATGCAGCTCCTTGTCCTGCCAAGACATTATAAGGC
ACGAAGGGCAGCGGGAGCGCGTTTTGGAGGACGGAAAAAAATCGTTCCGC
GGTGGCTTGGTGTGGTCGTGAAGAAGCGCGTGTGTGAAGCTAATCGACAC
CGTCCAGATGGGGGAGCTGTGAGGGGGGGGGCTAGATGTGTTTCAGCGGC
AATGGCCCGCGTGTTCAAGGAATAACGAGCCTCAAAAAATAAAAAAAGCT
TTAAATTTGCCGCCAAGTTGGCCGGGGAAACACATCGTTCCGGCCTGCAT
GTGTACATATGGTACGTAGGGGGTATGTTAAAAACTTGTTTTCCTGGGCG
ATAAGAGGCCCGTCGGGGATATTGCGCCACGAAATCAATAATTACATCCC
ATGTGCACGGACCCACCAGAGGCTATTTTTGCTCTGCCAGTAACAAACAA
TCGCGAATCTGTTTTTAAGATTTACGACTTTGCTGCCTCGTTTCCAATAG
CACCGGGCTTGGATAAAATCATCCCTACCCCCCCACCAACACCGCTCCAA
TCGCTTACCCGTCGCCCCCGTCCTCCCCCCCCCTCCCCCCCTCCCTCCGC
TCTCACCGCAGTCCATCGGCCTCGTCTCGACAAACAGCGGGCGCCGCGCT
CCCGGCGTTGTCGCCGACCGCGCGGCCGCCTCGAAGAGCGCCAGCAGGAA
CGACGCCGGGCGCACGAAGCCGCGAGGGAGAGGGGGGGCTCCTACCCTCG
CGGCGCAGATGCTGGTGAGAGGGAGAGTGGAGGGGACGAGGTCGCGGAGT
GCTGCCTTGTCAGCCTACCTGTCTGTGTGTGTGTTTGTCTGTCTGTCTGT
CGTCTGTCTGTCTGTGTGTCTGTCTATCTTTCTGTGTTTCTGCTGTCTGT
CTACCTGTGCGTCTGTCTGTCTGTCTGTCTACCTGTCTACCTGTCTGTCT
GTCTGTCTGTCTGTCTGTCTGTCTTTTTGTCTGTCAGCCTGCCTGTCTGT
GTGTCTGTGTGTCTGTGTGTCTGTGTCTTTCTGCTTGTCTGTCTGTGTAG
CATCCGCCTGTCTGTATGTGTGTCAGTCAGTCAGTCTATCTGTCTGCCTG
CCTGCCTGCCTATCTGTCATCCGCCTGTCTGTCTGCGTGCCAGCCCGCCT
GTCTGTCTGTGTAGCATGCGCCTGCCTGTCAGCCTGCCTATCGGTCGGCC
TGTCTGTCTGTTTTGTCGTCGCCTCCACGAACGCGCGGGCGGGGGGATAA
TAAGCCCCGTCGCATCTCTTTCGTTCGGTGTTCCGCCGAACGAGGGAGGC
TTTCGTTGGACACGCCCGCGGGTACGGGCACGGCACCCGACGCTAGACTA
CCGCGCAGCGCGTGCGCAGCCTACTAAGTAGACCGTGCGCTCCTCGCCCC
GTTAGACCCCGGTCGGTTTTGATTTTGGTTTGGTTCTATCGCCCTCACCT
CGATGTACCCCGGTGCCGCCCGCGCTCTTCTACTCGCGTTGCCGCAGGAG
GAGGCCCAAGCCGCCGCGGCGGCGAAAAGAGGTGCGCACGAAAGTGGGGG
CGGCGGGAGTAAGGCGGCGGCGGAAACCCCCCTCCAGGCGGTGTCGATCC
GGGGGATGGTGGGGCCCCGGCACGGCGGCTTAGTGGTGGAGGAAACGGCG
CCACAGCTGACCGAGGTGCGCGTCGCGCTTTCGTATTTTTTGTGGTTTTG
TTGTTCTCTGTTTTTTCTACCCCCTTCTCCTCCTTCCCCCTCTCGTACCG
TCAACCCCCGTGAAGGAATTGGCGGCGGGTTCGCTCAAACCCTGTGCGTT
TCAGAGGGGATATCGTTGATGTATGTACATAGGCGGGTATACGTTTTGTT
TTTTTTTCCTCCCGTTATTGGCTTATTCGTCGTCTGCCCCACTGGCCCCC
TTCCTCCACTTTACGACCAGCTAGACGACCCAACCGGGATCACACAGGAG
GGGGCGGGGCGGGGTTGGACCCCCTCCTGCGGTGTGCATGCACGCTGGTG
GATGTCTGGCTTGGCCCAGGGTGTGCTCGAGAGGGGGGAGTTTGAGGCCA
TCAGTGACACACACGCTTGAACAGCCCAGAAGGCGCGCAAGTCCCTTCCC
AACGGCGCATCCACAACACACCCTGCTACTACCTGTACCCACCCCCACCG
CCCGCTATACTCGAACCCCCCCAAAAATGAAGCATCAAAATATCCAAACC
ACTGCCTGCTTGCCCTTTGTCCCATGGCGTCAGGTGGTTTCTTCCGCGAA
GCGAGCGGGCACACCGGTCGTTACCGATACCGTCAACGGCAACGGCAACG
ACTGCGCCACCACAGCCTCCGCAGTCAGCGAAACGCCAACACCGACAGAA
TCTCCGGGGCTGCCGGCGCCGCCTCCTCGATTTATGCCTGACTCTCCGCG
TCGAAGAGGGGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1284:7560..14322-

>mRNA_L-elsbetiae_contig1284.2277.1 ID=mRNA_L-elsbetiae_contig1284.2277.1|Name=mRNA_L-elsbetiae_contig1284.2277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1656bp|location=Sequence derived from alignment at L-elsbetiae_contig1284:7560..14322- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGGGAACCGACACCTCGGAGACCTGTACATGATGGGCAACCCATG
CCAGATGGAGGGGAACCGACACCTCGGAGACCTGTACATGATGGGCAACC
CATGCCAGTCGTGGCCGGGGTTCGAGGCGTACGTGATAGCACGCCTGCCG
CAGCTGGAGCGCCTGGACGGCAAGGAGATCACCCGAACAGACAGAATAAA
GGCCCAGCAGCGGCTCCCCGCCCTTCGCGAAGAGATCGCCCCCCTGGCTG
AAGAGTCGTGGCCGGGGTTCGAGGCGTACGTGATAGCACGCCTGCCGCAG
CTGGAGCGCCTGGACGGCAAGGAGATCACCCGAACAGACAGAATAAAGGC
CCAGCAGCGGCTCCCCGCCCTTCGCGAAGAGATCGCCCCCCTGGCTGAAG
AGGTAAGACAGCGCAAGCGCGCCGAGAGACAGGCGACTAGGGAGGGCGAT
CGAGACAACAGCACCGAGAGCGGCGCCGGCGCCGGCGGCCACCCCCCGGC
CCCGGGGAAGAGCGATGGCGCCGCAGCACCGGCAACGGCGGCGGAGGAAC
ACGAGGAGAAGATGGCAAGGGCCAGCGGCGGTGGCGGCGGCGGCGGCGGT
GAAAAAGGTGGCGGCAACGGAGCGGCGATCGGAGACGGAGAAGAGGAGAT
GACGAAGCACACCCCGGAGGTGCGGACGGCGATCTACCGCGAGATGGCGG
AGCAGAAGAAGGAGAAGGAGGACCGGCAGCGGGAAAACTTGCCCAAGGAC
CGCGACTTTGAGCTCGAGCAGGTAGGGCTGCTAGGCGGGCGGGGGGGCAG
GGTAAGACAGCGCAAGCGCGCCGAGAGACAGGCGACTAGGGAGGGCGATC
GAGACAACAGCACCGAGAGCGGCGCCGGCGCCGGCGGCCACCCCCCGGCC
CCGGGGAAGAGCGATGGCGCCGCAGCACCGGCAACGGCGGCGGAGGAACA
CGAGGAGAAGATGGCAAGGGCCAGCGGCGGTGGCGGCGGCGGCGGCGGTG
AAAAAGGTGGCGGCAACGGAGCGGCGATCGGAGACGGAGAAGAGGAGATG
ACGAAGCACACCCCGGAGGTGCGGACGGCGATCTACCGCGAGATGGCGGA
GCAGAAGAAGGAGAAGGAGGACCGGCAGCGGGAAAACTTGCCCAAGGACC
GCGACTTTGAGCTCGAGCAGGTAGGGCTGCTAGGCGGGCGGGGGGGCAGG
CCCGCGAGCGAGAAGCCGAGGGCGCTATCAGGCAGTGCAACGAGGGGAAG
CTCGAGTTCCGTTTCGAGGAAACGCGGCCGGGGGGTTCGGGTCTGGGGGG
TGCAGGGGGGGGGCAGAGGGGATGTGTCGGGCGGGCGGCGGGCGGCGGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGTAGCAGCGGAGACATCGTG
CTCGAGGTGGCGGTGCCGAAATACCTAGCCCGCGAGCGAGAAGCCGAGGG
CGCTATCAGGCAGTGCAACGAGGGGAAGCTCGAGTTCCGTTTCGAGGAAA
CGCGGCCGGGGGGTTCGGGTCTGGGGGGTGCAGGGGGGGGGCAGAGGGGA
TGTGTCGGGCGGGCGGCGGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCGGTAGCAGCGGAGACATCGTGCTCGAGGTGGCGGTGCCGAAAT
ACCTAG
back to top