mRNA_L-elsbetiae_contig12835.2276.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12835.2276.1
Unique NamemRNA_L-elsbetiae_contig12835.2276.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12835.2276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12835contigL-elsbetiae_contig12835:1506..3079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size196
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12835.2276.1prot_L-elsbetiae_contig12835.2276.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12835 1543..3079 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815470.5186841-UTR-L-elsbetiae_contig12835:1505..15421622815470.5186841-UTR-L-elsbetiae_contig12835:1505..1542Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12835 1506..1542 -
1691682913.078296-UTR-L-elsbetiae_contig12835:1505..15421691682913.078296-UTR-L-elsbetiae_contig12835:1505..1542Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12835 1506..1542 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815470.5300214-CDS-L-elsbetiae_contig12835:1542..15871622815470.5300214-CDS-L-elsbetiae_contig12835:1542..1587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12835 1543..1587 -
1691682913.0868537-CDS-L-elsbetiae_contig12835:1542..15871691682913.0868537-CDS-L-elsbetiae_contig12835:1542..1587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12835 1543..1587 -
1622815470.5423384-CDS-L-elsbetiae_contig12835:2965..30791622815470.5423384-CDS-L-elsbetiae_contig12835:2965..3079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12835 2966..3079 -
1691682913.095585-CDS-L-elsbetiae_contig12835:2965..30791691682913.095585-CDS-L-elsbetiae_contig12835:2965..3079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12835 2966..3079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12835.2276.1

>prot_L-elsbetiae_contig12835.2276.1 ID=prot_L-elsbetiae_contig12835.2276.1|Name=mRNA_L-elsbetiae_contig12835.2276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=53bp
MPRRYLAGDRRSFHGPDKAAYVGRLGRRPRQAIVSYHERLTRLLPEGRRD
WE*
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mRNA from alignment at L-elsbetiae_contig12835:1506..3079-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12835.2276.1 ID=mRNA_L-elsbetiae_contig12835.2276.1|Name=mRNA_L-elsbetiae_contig12835.2276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1574bp|location=Sequence derived from alignment at L-elsbetiae_contig12835:1506..3079- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCGACGATACCTTGCAGGCGATCGACGATCCTTTCATGGACCTGA
CAAAGCTGCCTACGTAGGACGACTTGGAAGGCGCCCCCGCCAGGCTATTG
TATCCTACCACGAGGTGAAACAAACGGCAAACTAGATTCAAACGACGAAA
TCAGGAGTTTTGTTCAATCGATTGGCCATATTGTTCGCACCCACTTCAGA
CTACGTTACCTCTGTTGTACTAGGAGTTGCGTATCTCGGGGGTGCCCTGC
TACGGGGTGAAAAGTGACGTGGGTTGGTTAGGCGAGGTTACGTGTCTCTT
GGTCAACGTTCGCGGGGATGTAAGGCGGAAGCGGGATGTATCTGCTAGCT
TCTAGTAAAACCGCGAAGCAAACATGGAGGACAATTGAGACACGCAGGGC
ACATGAGGCAGGCCTGTGCGGTAGGTATAACATCGCCACGAGCTCTCTCG
TGTCCTCGTCTTTTCCCCTAGGAAGTAGTGCTGACGGTTGGCTTTGGGGC
AGAGCTGTGGGTAGGATCTTCTTCCACTTTCACGTTCCAGTGTAGTTGGG
GTGGTTATGGACGGAACTCCCCGCGTCGCCCTCTGTTTGGTGCTAGTAAC
GATTTGTGGCGGACTGATAAGCCTGTCAAGGATGTACATACCTTCTCTCT
AGGCGTTCAAAATCCGGGATAATTGGGGGCGGAGGTTACAGGAGAGGACC
TGAACCGACACCTGGCGGTGGTTGCTGTCATCTCGCTTGTAGATCTCTCT
CCAGCTGTTCTTTTGCACCGAAAAAATCGATGTTTGTGCTTTCAAACGAG
AAAGGTTTCCAAGAAGACCGAGCCAGTACGTGGGTTAACTGCCTTCAGGT
AGCTGGAGCTGTTGCTAACAGAGCAGCGAGCAATATGCGAAGGGCGCCAA
AGGCAGAGCTCAAGTGTGCACCGAGAAAACAGCATTTTCGTGTGTCGGCA
AAAGTTAGCTCACACACGCATGCATGGGTAGACAGCAGCGAGAGGTCGGC
CATGGAGGGCTCGGGGTCTTTGGAGACGGGGTCTTCGGCTTAGCTTTTCT
TATCAGAACCTTGAAGGAGCATAGTTGAAGCACAGGAACATCTGTGCATA
CGGTGATGTTCGATGTAGAGACCTAGGTGTGTTCAAAACTGTCTTCAAAT
ATGCCCTCTTCTCTAGGGTTAGGGTTAGGGTTAGGTATATGTATGTAGTC
AAGACAGCCGAACCGGCTGCCCCCCCGTCCGACATTACGATGCCGAGCAC
ATATCCTTATTGTACTGATTTCAAAGAAAACATACTTAGAACTAGCATTC
CTTCCTCGCTACTTTAAGTGCGTTGTACAACCTAAAACGTACCCCCGTTG
TCTGCGGCTCGACGTGCTCGTTTTAACTCTTCCCTCCCCCGTCCGTCCGT
GCCTGACTGCTTTTTTATTTGCCCCCCTATTGCCCCTTCCTCTGCATCCG
CTTCGCTGCCTGCTCCTCTGATCACGTGCGTCGCTAGCGCAGAGGTTAAC
GCGCCTCCTTCCCGAGGGGCGACGCGACTGGGAATAAAACAACAAGGGCC
GCCTCGCCACCGAGATGGGCCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12835:1506..3079-

>mRNA_L-elsbetiae_contig12835.2276.1 ID=mRNA_L-elsbetiae_contig12835.2276.1|Name=mRNA_L-elsbetiae_contig12835.2276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig12835:1506..3079- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCGACGATACCTTGCAGGCGATCGACGATCCTTTCATGGACCTGA
CAAAGCTGCCTACGTAGGACGACTTGGAAGGCGCCCCCGCCAGGCTATTG
TATCCTACCACGAGATGCCCCGACGATACCTTGCAGGCGATCGACGATCC
TTTCATGGACCTGACAAAGCTGCCTACGTAGGACGACTTGGAAGGCGCCC
CCGCCAGGCTATTGTATCCTACCACGAGAGGTTAACGCGCCTCCTTCCCG
AGGGGCGACGCGACTGGGAATAAAGGTTAACGCGCCTCCTTCCCGAGGGG
CGACGCGACTGGGAATAA
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