mRNA_L-elsbetiae_contig1283.2274.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1283.2274.1
Unique NamemRNA_L-elsbetiae_contig1283.2274.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1283.2274.1 vs. uniprot
Match: D7FJZ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJZ8_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.250e-28
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:  388 LTDDELLVKHYPRYFYDKKEKFFPVDLNKYTADQSAVDGCNGVAAPSKDGDHTWLIYMSYYL 573
            LTDDELLVKH+PRYFYD+KE  FP+DLN+YT D+S VDGCNGVA PSKDG++TWLIYM+YYL
Sbjct:   42 LTDDELLVKHFPRYFYDEKETLFPIDLNRYTVDKSEVDGCNGVATPSKDGENTWLIYMNYYL 103
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1283.2274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJZ8_ECTSI1.250e-2879.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1283contigL-elsbetiae_contig1283:19202..23084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_003040.1
Exons3
Model size575
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1283.2274.1prot_L-elsbetiae_contig1283.2274.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1283 19520..23084 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815470.3834734-UTR-L-elsbetiae_contig1283:19201..195191622815470.3834734-UTR-L-elsbetiae_contig1283:19201..19519Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1283 19202..19519 +
1691682913.0233943-UTR-L-elsbetiae_contig1283:19201..195191691682913.0233943-UTR-L-elsbetiae_contig1283:19201..19519Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1283 19202..19519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815470.3964438-CDS-L-elsbetiae_contig1283:19519..196741622815470.3964438-CDS-L-elsbetiae_contig1283:19519..19674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1283 19520..19674 +
1691682913.0358412-CDS-L-elsbetiae_contig1283:19519..196741691682913.0358412-CDS-L-elsbetiae_contig1283:19519..19674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1283 19520..19674 +
1622815470.4079475-CDS-L-elsbetiae_contig1283:20616..206701622815470.4079475-CDS-L-elsbetiae_contig1283:20616..20670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1283 20617..20670 +
1691682913.0455844-CDS-L-elsbetiae_contig1283:20616..206701691682913.0455844-CDS-L-elsbetiae_contig1283:20616..20670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1283 20617..20670 +
1622815470.4211128-CDS-L-elsbetiae_contig1283:23038..230841622815470.4211128-CDS-L-elsbetiae_contig1283:23038..23084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1283 23039..23084 +
1691682913.0584242-CDS-L-elsbetiae_contig1283:23038..230841691682913.0584242-CDS-L-elsbetiae_contig1283:23038..23084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1283 23039..23084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1283.2274.1

>prot_L-elsbetiae_contig1283.2274.1 ID=prot_L-elsbetiae_contig1283.2274.1|Name=mRNA_L-elsbetiae_contig1283.2274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MAEAPKEESKVGVPEVEDGSAKALTDDELLVKHYPRYFYDKKEKFFPVDL
NKYTADQSAVDGCNGVAAPSKDGDHTWLIYMSYYL
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mRNA from alignment at L-elsbetiae_contig1283:19202..23084+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1283.2274.1 ID=mRNA_L-elsbetiae_contig1283.2274.1|Name=mRNA_L-elsbetiae_contig1283.2274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3883bp|location=Sequence derived from alignment at L-elsbetiae_contig1283:19202..23084+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGACTCGGCTCGTAGAAAAAGCATGCATGATGATTACCAACGGTAAGA
ACGGCATGGGTTGAGTCACTGATTAATCATTTTGATTGCCTCTGTCTCGA
CAACACGCAATTACCCGAGAGGTGCGACCACGAGGAAACAGAGAAACCGC
CCGTTGCCACATAATCAGCGGCGGAACATCCGACCGGGGGGACCCGTAGA
CCGCGGTAGGATCTACGAGCATCACACAATACCATTCACCATCCAACATC
CCAAAAAAGTTCGGCTTGCCAGCATTCGACATCGTTTACCCCAAGAACGA
AACTAAAGAAGGAAAAATATGGCCGAGGCACCTAAGGAAGAGAGCAAGGT
GGGTGTGCCTGAGGTAGAGGATGGGTCTGCGAAAGCTCTCACGGACGACG
AGCTGCTAGTCAAGCACTACCCCCGCTACTTCTACGACAAGAAGGAAAAG
TTTTTCCCCGTCGATCTCAACAAGTGAGTGCATCCAGTACTCCCGATAGT
GCAGCGTGAGTGCTCTACACAATTTGCCGTCAGGTTGTTCTGTCGGTGGC
AGCGGAATCGGAGTAACGGACAACGGAGCAATTGGCAACCCCGGGAAGCA
ACCGCAGCAACCAAAACTGCTCAGGGTGATGGGGTGTGCTGGCGGGTCAA
CCCGCAAGTATGCGGGGGCACGATAATGCAGCCGGTTCTAGAGAGCAGCA
GCCAGGCAGAGCCTCCCACCATTGCGGCTCTGCCTGAAAGAAACCAACGA
CGAGCAGGAGAAAAAATGAGGCCTTCCTTTGCATTTTATTCTTTTCCGTC
TGTTTTTTGTCCGTACGTGTCCTAGATACAGTTTTACGTATGTGCATACA
GGACAATTTATAATTAGGAAGAATTGATTCCGTTTTCGTATTTTTGTGTT
GATGCGGGCTTAGCAAGCAGGGTCTGGATGGAGAGAGTGCCGGCGCCACA
TCAGATCGTTGACAACATCATTAATTAAGCAGGAGAACAACAGCAACGGC
GGCAACTAATATTTCTGCTGCAATTTTTTCGCAGAACCAAACCAAACCGG
GTTCCCCCGGCCGGAAAATTGCGGGAGAGAATCGATGCCACTATCGAGTG
TAGTAGGTGTACACGAGTACCTAGCCCACCACGTAGCTTTGCTTTCTTAT
TTTTGTTTTGGTGTTAAGCTTTTGGGAAGGAAACGCTACTCTGGCATTTA
AAGCATGTTGCATTGATTCGTAATGGTATGGGGCATCCATGCGGAAAAAG
CGGGCGTGCATCGCCCTCCTGCCTGTATCCATGCGCCACTGCTGCTTCGC
GAGGAGAGAGAGGGCAAACTTCAAGCTGCTGTTTTGCGGGTTAACTAAAC
AAACAGCATCCAACCCTCGCTCGCTGCGCGCGTGTACCCTTGCCCTCAAC
TATCAACCAATGTAGGTATACGGCGGACCAATCGGCCGTGGATGGATGCA
ACGGAGTCGCTGCGCCGAGGTGGGTGAAAGAAGAAAAATGCGTTCGTCTC
TCTCTGCCGGCGGGTGCTTCCTCGATTGAAGTTCCCCCTCGCCTTTTTCA
AATTATTTTTTTTAATGCGAACAGAGCACTATTTATCGCTCTCGTGCCGC
AGTGCCGTGTGCAACCTTCCGAGAGACCTTTCGCCTTTTCCCACAGAGCG
TCTCTCCCCCCCCCCCTGCCTGCTGTCAGTTGAGGTTCACGAGTGAGTGA
GAACAGCAGCAGCGATTTTGGCAAGGCGCTTCTTCGTCCAAATACATGCA
TGGACTACTGTGCTCTCTTCTCTATTTTGAAATAAATATAATGTACCCTC
CTACTCTTTTCTTTCTTTTCCTTTTTTACTCCAGGACCATTTTATCTTTT
CCCGTTTGCATAGGTACCAAAGACAAAATACGAAATAAACCCGGTGTGGG
TACAAGTCAAGTACGTCCCAAGGTCAGTTGTTGTACAGAGGACACACACC
ACACACAGCATCAGTTAGTTGATAATGTGTACGCGTGCACGCACACCGAA
ACGTGTGTGTGCACCGGAAGAAGAGGAGACGAAGGCAGACTACGTAATAC
ATAAGCCAAAATAAATAATGGGGAAGGAAACAAAAATAAGAACAAGAAAA
AACACAATAATAATGTGTGCATATTTCGTCGTCCCCCCATCTATTACGTA
GAAAAAAGCTTTTTACATCGCGGAAGATTGGTGAGAGGGCTCTTTTGTCT
CTCCTGCAACTCGTACCGTGCTACTTACGTAGCACCTTACATAGCGCTCC
CTCGTACATTCAAAGTTCTTGCAGTCCCACGGTAAACATCTCCCCAGTAC
AATGTACCAGCATTTTCCCTTTTCGACCCACTTTTCGTAAAAAAAGCAGA
GTTATTCTGAATATTCTACGTAATACATACATACATAGACTAGAATGTCG
GCGGTTCAAAAACTAGTTCTAAATATTTTACGTACGTACGTAGAATGTCG
GCGGTATTACGTCCGACCTGCCGAAAAAAAGTCGTTACATACAGGAGACT
GCTGTTGTTGTAGACACACTAACCATCCGGCCCCCCTTTTCTTTTTGCCT
TCTTTTGTGGTGCCAGGGGAGGAAAGGGAGGTGATATGTACAAATATATG
TACTTCGAAGAGTATTTATGCATGCAGGTACACCAGGTAGTCTAGTTGTT
CGTTAAAGATGCCGTCGTGCTTGTCAGTGCTTGTGTTTATGATTTAGATC
TATAGAAGCGGAAATAAACCATACTGACTGGTCTTCTAATGGTTTAATTT
CCGCTTCTATCAAAAAAGTTAGTCGTGGGTTCAAATCCCAGACTGAGCAC
TTTTTTATCTTGAGACCGTGGATACTCCTGGCCAGAGTATAGGTGATAGA
GAAGGTCCTGAGGCCCTGGATACTCGTTGAGAGTATGGGCGACGGACGGT
CCTGAGGCCCTGTATACTCGTTGAGAGTATGGGCGACGGACATTCGGCCG
AGTGAAGCGAAATAAACATTAGATGGACAGTAGTACTGGCAAGGGGAGTC
ACCCTCCTCGGGAGTGCAGCAAGTGTGTCGGGTAATTTGAACCCCCACGA
CTAACTTTTATAGAAGAAGCGGAAATTAAACCATTAGACCAGTCAGTCGA
CTGACTGGTCTAATGGTTTAATTTCCGCTTCTTCTATAGATCCTGCTCTC
GAGAAGAAAGGTGTCCAGAACCAATCAGCGAGTCTGCTTTATTGGCTGAT
CTCCGGGTGGCGCTCGAGGCCGCCGACATTTCCTCTCCGCCACCACACCT
TGGTGGTGGACGGACCTAAATGTTGCTTTCTTAAACACAACAAGAAGAGC
AAAGACCAGAGGCAACATAAACGCCAATGCTTTTGACACCTGCCAGCTGA
GCGGGACTTTAACTCAAATGTCGTTACCGCCCGCCAGTAAACGCTCCCAC
ACCCCGCCTACGTTGCTCCAAGCCGGTCCTCTAAGCCCCCGAAAACTCGC
GTTCTGTCTGCGACAACAAGCGCACAGCAGCACCAATCGCCACCCACCCC
CGGCCCGGTGCTACCCCCGGGGGTCAATCTTATCTTGCGACGATGCCCCC
TCTTTTGCTAAATGCCCCCCCCCTTCCTCCCCCCTCCCTCCCTCCCCCCT
CCCCGCGCGCGTGCTACCCCCGGGGGTCAATCTTATCTTGCGACGACGCC
CCCTCTTTTGCTAAATACGGCGCCCCCACCCCCACCCCCCCTCCCTCCCC
CCTCCCCGCGCGCGACCCTTGTCTTGTTGCCTCGTGGTCTTTTGGTGTCG
CTGTTTTCTTCGCGGTCTTTGCATTTCTCCTTCTTCTTCTTCTGCTTCAT
CTTCTTCTCCTCCCTTTTCGTCGTCTCCTGGTTTCAGCAAGGACGGTGAC
CACACCTGGCTCATCTACATGAGCTACTACCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1283:19202..23084+

>mRNA_L-elsbetiae_contig1283.2274.1 ID=mRNA_L-elsbetiae_contig1283.2274.1|Name=mRNA_L-elsbetiae_contig1283.2274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig1283:19202..23084+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGAGGCACCTAAGGAAGAGAGCAAGGTGGGTGTGCCTGAGGTAGA
GGATGGGTCTGCGAAAGCTCTCACGGACGACGAGCTGCTAGTCAAGCACT
ACCCCCGCTACTTCTACGACAAGAAGGAAAAGTTTTTCCCCGTCGATCTC
AACAAATGGCCGAGGCACCTAAGGAAGAGAGCAAGGTGGGTGTGCCTGAG
GTAGAGGATGGGTCTGCGAAAGCTCTCACGGACGACGAGCTGCTAGTCAA
GCACTACCCCCGCTACTTCTACGACAAGAAGGAAAAGTTTTTCCCCGTCG
ATCTCAACAAGTATACGGCGGACCAATCGGCCGTGGATGGATGCAACGGA
GTCGCTGCGCCGAGGTATACGGCGGACCAATCGGCCGTGGATGGATGCAA
CGGAGTCGCTGCGCCGAGCAAGGACGGTGACCACACCTGGCTCATCTACA
TGAGCTACTACCTCCAAGGACGGTGACCACACCTGGCTCATCTACATGAG
CTACTACCTC
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