mRNA_L-elsbetiae_contig1283.2272.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1283.2272.1
Unique NamemRNA_L-elsbetiae_contig1283.2272.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1283.2272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1283contigL-elsbetiae_contig1283:6058..7873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_003380.1
Exons3
Model size256
Cds size252
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1283.2272.1prot_L-elsbetiae_contig1283.2272.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1283 6060..7873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815470.1385274-CDS-L-elsbetiae_contig1283:6059..62101622815470.1385274-CDS-L-elsbetiae_contig1283:6059..6210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1283 6060..6210 -
1691682912.862748-CDS-L-elsbetiae_contig1283:6059..62101691682912.862748-CDS-L-elsbetiae_contig1283:6059..6210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1283 6060..6210 -
1622815470.1503851-CDS-L-elsbetiae_contig1283:6849..69141622815470.1503851-CDS-L-elsbetiae_contig1283:6849..6914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1283 6850..6914 -
1691682912.8718188-CDS-L-elsbetiae_contig1283:6849..69141691682912.8718188-CDS-L-elsbetiae_contig1283:6849..6914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1283 6850..6914 -
1622815470.1627295-CDS-L-elsbetiae_contig1283:7837..78731622815470.1627295-CDS-L-elsbetiae_contig1283:7837..7873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1283 7838..7873 -
1691682912.8812714-CDS-L-elsbetiae_contig1283:7837..78731691682912.8812714-CDS-L-elsbetiae_contig1283:7837..7873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1283 7838..7873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1283.2272.1

>prot_L-elsbetiae_contig1283.2272.1 ID=prot_L-elsbetiae_contig1283.2272.1|Name=mRNA_L-elsbetiae_contig1283.2272.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
AACPLERASENEVVVETVPSSRRHAQGCHSLGSRYLRVRTIPPDSIRYGR
SPSSPAPPQPAPPIAKNRPTAACHRPWGARLQNR
back to top

mRNA from alignment at L-elsbetiae_contig1283:6058..7873-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1283.2272.1 ID=mRNA_L-elsbetiae_contig1283.2272.1|Name=mRNA_L-elsbetiae_contig1283.2272.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1816bp|location=Sequence derived from alignment at L-elsbetiae_contig1283:6058..7873- (Laminarionema elsbetiae ELsaHSoW15)
GCAGCATGCCCTCTTGAACGAGCGTCGGAGAATGAGGTGAGCTGTGCCGA
TTGCCAACTGCAACGGCTGTACGGTAGATAATGGCCGCGTTTTGCTGAAA
AATCCGAAGTACATTAAGCTCACGGGATGTAAGATAAAGAATGGCGCGAG
TCTTTGTAATCTTGATTAACACCGAGTAAATGTCGGAGAAGGCAACGAGG
TGGGTTCCGCAGATATTTGGCCCGTGCCTCCATTACCAGAGATTTCCCCA
CGCAAACAGGCGCTACTTGATATTTTGCGGGCGACGTACACAAACAAGCG
AGATGCACACGTAGCAGGCGACGCTATGCACCCAAGAGTGTGCTCTACGC
GAGCAGTGTTGGTGCAGCAGGGCCATGACTTCATGTAGTTAACCTTTGTT
GAAGTCCCCAGTCTTCGATATTGAAGATACTTAGTCTAAAACTTTACATA
TTTGGTTGGAGTCGGTTGGCAACAACACTGACTGATAACCAAACAATTCA
TCGCGTGAGCCAGGCAAACGGGGATACCGCCGTGCTCTGCGCTTCGTGTT
ATTGTTCACGGTATAATTCCATGAACTGCTGTGGTCAAGGTCATGTTGGT
CATTTTTGGAAATTCCCTGAATCATCCATCCCACGATGTACTGTTGAAAA
CAAATAGTGAGGCTCTCGCGAGGCAGTTTAGTGACCCATGGCTGTCTTTG
AAAGTGTTGGCACACATGAAAAAATAGCCGAGTTTATTGGAAGCTGTGGT
TCATCACATATAAGGAAGCACGCACAAGAGCCGAACGCCCCTTGCTAGGA
TGCATCCGGGTCGGTCGAAAACCACTGTAGGTGTGGCTCCGGCCCAGAAC
TGTGGGTATGCTTTTGTATAAATAGTCTAGCACCAGGTATCGGCCCATGG
CGTGCATTGTCAACGAGCTCACACGCACACACGCACACCTGCTCTGCCGC
ACGAGCCAGGTCGTTGTCGAGACCGTCCCGTCGAGTCGGCGACACGCGCA
AGGATGTCACTCTCTTGGCTCCAGGTGAAGCAGAATGTTTCCGCTTCCGA
GTTACTTTTCCTATTTTGTGAAGATCTACACCAGTCAGTGAACAAATCTG
CAACTACTAATATAAAGGGTAATTAGTTTTGTTTAGCCTTATAAATTATG
AGGACTATCTAATTGTTGCTGATAGTTATTTTAGTAGATCCTTGAGGTTG
GTTCCGAGTTATTATAGTAGATGTCTTTCAAACCCGCTCAGGTTGGTTGC
AAGGTGATTGACCCTACCCATCGGATTAAACCAAAGGAAAACGTGGGCGT
ACACACTGCAGGTTCGCCTCGTCACTGCTACACACAACACAAGAGCCAAG
GGGGGGCGAACGACATGAATATTCATCGTATAGTATACGACAACCTCCCA
TCCTTATGTTGCCACGCAGACCCCCCTCTCTGATCCTTGAGGCAATGACC
CACAGCACAGCAACTGCCCAAAGAGGTCGCGATTGATTGTCAAACAAACA
CCCATCAGCCGACTCAAAAAACTAAAACTGTTTTTTTTCGCTTGTGTTTA
TTTTCTTCCGGCGGCTTGGTAGGCAGACCGCGCCTAAACATGGACCAAAC
AGCAGTTTTCGCCCTAAAGAAGCCAAATGTACTCGCGTTTTTTCATACCA
ACGATATATTTAGGTATTTGAGGGTGCGAACGATACCCCCGGATAGCATC
AGATACGGAAGGAGTCCATCCTCTCCGGCACCACCGCAGCCGGCGCCTCC
GATCGCGAAGAACCGACCCACCGCCGCCTGCCATCGCCCCTGGGGAGCAC
GGCTCCAGAATCGCAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1283:6058..7873-

>mRNA_L-elsbetiae_contig1283.2272.1 ID=mRNA_L-elsbetiae_contig1283.2272.1|Name=mRNA_L-elsbetiae_contig1283.2272.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig1283:6058..7873- (Laminarionema elsbetiae ELsaHSoW15)
GCAGCATGCCCTCTTGAACGAGCGTCGGAGAATGAGGCAGCATGCCCTCT
TGAACGAGCGTCGGAGAATGAGGTCGTTGTCGAGACCGTCCCGTCGAGTC
GGCGACACGCGCAAGGATGTCACTCTCTTGGCTCCAGGTCGTTGTCGAGA
CCGTCCCGTCGAGTCGGCGACACGCGCAAGGATGTCACTCTCTTGGCTCC
AGGTATTTGAGGGTGCGAACGATACCCCCGGATAGCATCAGATACGGAAG
GAGTCCATCCTCTCCGGCACCACCGCAGCCGGCGCCTCCGATCGCGAAGA
ACCGACCCACCGCCGCCTGCCATCGCCCCTGGGGAGCACGGCTCCAGAAT
CGCGTATTTGAGGGTGCGAACGATACCCCCGGATAGCATCAGATACGGAA
GGAGTCCATCCTCTCCGGCACCACCGCAGCCGGCGCCTCCGATCGCGAAG
AACCGACCCACCGCCGCCTGCCATCGCCCCTGGGGAGCACGGCTCCAGAA
TCGC
back to top