mRNA_L-elsbetiae_contig12823.2271.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12823.2271.1
Unique NamemRNA_L-elsbetiae_contig12823.2271.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12823.2271.1 vs. uniprot
Match: A0A6H5KZR8_9PHAE (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZR8_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.480e-15
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:    1 NFREEAGPCEYIVWYCRMLTSGFLKLNADRYL 96
            NFREEAGPCEYIVWYCRMLTSGFLKLNADR+L
Sbjct:  181 NFREEAGPCEYIVWYCRMLTSGFLKLNADRFL 212
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BLAST of mRNA_L-elsbetiae_contig12823.2271.1 vs. uniprot
Match: A0A024G0R5_9STRA (OTU domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G0R5_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.110e-5
Identity = 18/31 (58.06%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:    1 NFREEAGPCEYIVWYCRMLTSGFLKLNADRY 93
            +F+ E G  EY+VWY R+LT+G+LK NADR+
Sbjct:  192 DFQTEGGESEYLVWYARLLTAGYLKQNADRF 222
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BLAST of mRNA_L-elsbetiae_contig12823.2271.1 vs. uniprot
Match: A0A7S1ADL7_NOCSC (Ubiquitinyl hydrolase 1 n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ADL7_NOCSC)

HSP 1 Score: 47.4 bits (111), Expect = 5.170e-5
Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    1 NFREEAGPCEYIVWYCRMLTSGFLKLNADRYL 96
             F EE G  EY+VWYCR L++GFLK + +R++
Sbjct:  164 QFNEENGGAEYMVWYCRALSAGFLKADPERFM 195
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BLAST of mRNA_L-elsbetiae_contig12823.2271.1 vs. uniprot
Match: M4C1S8_HYAAE (Ubiquitinyl hydrolase 1 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1S8_HYAAE)

HSP 1 Score: 47.0 bits (110), Expect = 7.030e-5
Identity = 16/31 (51.61%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:    1 NFREEAGPCEYIVWYCRMLTSGFLKLNADRY 93
            +F+ E G  EY+VWY R+LT+G++K NA+R+
Sbjct:  138 DFQTEGGEAEYLVWYMRLLTAGYMKKNAERF 168
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12823.2271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KZR8_9PHAE4.480e-1596.88Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A024G0R5_9STRA1.110e-558.06OTU domain-containing protein n=1 Tax=Albugo candi... [more]
A0A7S1ADL7_NOCSC5.170e-553.13Ubiquitinyl hydrolase 1 n=1 Tax=Noctiluca scintill... [more]
M4C1S8_HYAAE7.030e-551.61Ubiquitinyl hydrolase 1 n=1 Tax=Hyaloperonospora a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12823contigL-elsbetiae_contig12823:117..230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue2.7e-12
Seed eggNOG ortholog2880.D8LU52
Preferred nameOTUB1
KEGG koko:K09602,ko:K09603
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006282,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009892,GO:0009987,GO:0010033,GO:0010605,GO:0010639,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019784,GO:0019899,GO:0031056,GO:0031057,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031974,GO:0031981,GO:0032182,GO:0032268,GO:0032269,GO:0033043,GO:0033044,GO:0033182,GO:0033183,GO:0033554,GO:0034097,GO:0035871,GO:0036211,GO:0036459,GO:0042221,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045738,GO:0045934,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051716,GO:0060255,GO:0065007,GO:0070011,GO:0070013,GO:0070536,GO:0070555,GO:0070646,GO:0070647,GO:0070887,GO:0071108,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0101005,GO:0140096,GO:1900044,GO:1900045,GO:1901314,GO:1901315,GO:1901564,GO:1902275,GO:1902914,GO:1902915,GO:1903320,GO:1903321,GO:1905268,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001251
EggNOG free text desc.NEDD8-specific protease activity
EggNOG OGsKOG3991@1,KOG3991@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815470.1072981-CDS-L-elsbetiae_contig12823:116..2301622815470.1072981-CDS-L-elsbetiae_contig12823:116..230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12823 117..230 +
1691682912.8473-CDS-L-elsbetiae_contig12823:116..2301691682912.8473-CDS-L-elsbetiae_contig12823:116..230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12823 117..230 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12823.2271.1prot_L-elsbetiae_contig12823.2271.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12823 117..230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12823.2271.1

>prot_L-elsbetiae_contig12823.2271.1 ID=prot_L-elsbetiae_contig12823.2271.1|Name=mRNA_L-elsbetiae_contig12823.2271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=38bp
NFREEAGPCEYIVWYCRMLTSGFLKLNADRYLCTSQQ*
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mRNA from alignment at L-elsbetiae_contig12823:117..230+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12823.2271.1 ID=mRNA_L-elsbetiae_contig12823.2271.1|Name=mRNA_L-elsbetiae_contig12823.2271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=114bp|location=Sequence derived from alignment at L-elsbetiae_contig12823:117..230+ (Laminarionema elsbetiae ELsaHSoW15)
AACTTCCGAGAAGAGGCGGGACCGTGCGAGTACATCGTCTGGTACTGCAG
GATGTTGACCAGCGGCTTCCTCAAGCTCAACGCTGACAGGTACCTATGTA
CATCACAGCAGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12823:117..230+

>mRNA_L-elsbetiae_contig12823.2271.1 ID=mRNA_L-elsbetiae_contig12823.2271.1|Name=mRNA_L-elsbetiae_contig12823.2271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=228bp|location=Sequence derived from alignment at L-elsbetiae_contig12823:117..230+ (Laminarionema elsbetiae ELsaHSoW15)
AACTTCCGAGAAGAGGCGGGACCGTGCGAGTACATCGTCTGGTACTGCAG
GATGTTGACCAGCGGCTTCCTCAAGCTCAACGCTGACAGGTACCTATGTA
CATCACAGCAGTAAAACTTCCGAGAAGAGGCGGGACCGTGCGAGTACATC
GTCTGGTACTGCAGGATGTTGACCAGCGGCTTCCTCAAGCTCAACGCTGA
CAGGTACCTATGTACATCACAGCAGTAA
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