mRNA_L-elsbetiae_contig1282.2270.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1282.2270.1
Unique NamemRNA_L-elsbetiae_contig1282.2270.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1282.2270.1 vs. uniprot
Match: D8LT96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT96_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.060e-26
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 WNEDEGFFKVNQTLTGDFVLIARFKGTDGGAETGPEGVLFRYCNHTCFLPEG 156
            WNED+GFFKVN+ LTGDFV+IARFKGTDG AETGPEGVLFRYCNHTCFLP+G
Sbjct:  279 WNEDQGFFKVNKPLTGDFVVIARFKGTDGAAETGPEGVLFRYCNHTCFLPQG 330
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BLAST of mRNA_L-elsbetiae_contig1282.2270.1 vs. uniprot
Match: A0A6H5JR06_9PHAE (FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR06_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.510e-26
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 WNEDEGFFKVNQTLTGDFVLIARFKGTDGGAETGPEGVLFRYCNHTCFLPEG 156
            WNED+GFFKVN+ LTGDFV+IARFKGTDG AETGPEGVLFRYCNHTCFLP+G
Sbjct:  279 WNEDQGFFKVNKPLTGDFVVIARFKGTDGAAETGPEGVLFRYCNHTCFLPQG 330
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BLAST of mRNA_L-elsbetiae_contig1282.2270.1 vs. uniprot
Match: A0A7S2E4S0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E4S0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.270e-9
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 WNEDEGFFKVNQTLTGDFVLIARFKGTDGGAETGPEGVLFRYCNHTCFLP 150
            W ++EGF++VN+ L GDFV++ RF G        P  VLFRYCN+T F+P
Sbjct:  609 WADEEGFYRVNRLLIGDFVILVRFGGPYSYDLEDPTKVLFRYCNNTSFMP 658
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BLAST of mRNA_L-elsbetiae_contig1282.2270.1 vs. uniprot
Match: A0A1Z5JS78_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JS78_FISSO)

HSP 1 Score: 59.3 bits (142), Expect = 6.080e-9
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    1 WNEDEGFFKVNQTLTGDFVLIARFKGTDGGAETGPEGVLFRYCNHTCFLPEG 156
            W E+EGFF VNQ L GDF L+ RF G   G  + P  ++FRY N T FL  G
Sbjct:  370 WEEEEGFFPVNQILDGDFYLLCRFGGHYAGDLSDPSKIIFRYANTTGFLGAG 421
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BLAST of mRNA_L-elsbetiae_contig1282.2270.1 vs. uniprot
Match: A0A1Z5JJ85_FISSO (C2 tensin-type domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJ85_FISSO)

HSP 1 Score: 57.4 bits (137), Expect = 2.270e-8
Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 1 
Query:    1 WNEDEGFFKVNQTLTGDFVLIARFKGTDGGAETGPEGVLFRYCNHTCFLPEG 156
            W E+EGFF VNQ L GDF L+ RF G      + P  ++FRY N T FL  G
Sbjct:  154 WEEEEGFFPVNQILEGDFYLLCRFGGHYADDLSDPSKIIFRYANTTSFLGAG 205
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BLAST of mRNA_L-elsbetiae_contig1282.2270.1 vs. uniprot
Match: A0A1E7EJM2_9STRA (C2 tensin-type domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EJM2_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.390e-6
Identity = 23/57 (40.35%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    1 WNEDEGFFKVNQTLTGDFVLIARFKGTDGGAETG-----PEGVLFRYCNHTCFLPEG 156
            W ++EGF+++N  L G+F+L+ RF G+    E+      P  +LFRY N T FL  G
Sbjct:  736 WVDEEGFYRINVVLDGEFLLLCRFGGSSSTTESSRIIHDPSKILFRYTNTTGFLSGG 792
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BLAST of mRNA_L-elsbetiae_contig1282.2270.1 vs. uniprot
Match: A0A7S3Q062_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q062_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.210e-6
Identity = 20/49 (40.82%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 WNEDEGFFKVNQTLTGDFVLIARFKGTDGGAETGPEGVLFRYCNHTCFL 147
            W ++EGF++VN+ + GDF+L+ RF G        P  V+ RY N+T +L
Sbjct:  503 WADEEGFYRVNKGIWGDFLLLCRFGGQHSQDTDDPTKVILRYANNTSYL 551
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BLAST of mRNA_L-elsbetiae_contig1282.2270.1 vs. uniprot
Match: B7FZW8_PHATC (Formin like protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FZW8_PHATC)

HSP 1 Score: 48.5 bits (114), Expect = 3.950e-5
Identity = 24/53 (45.28%), Postives = 28/53 (52.83%), Query Frame = 1 
Query:    1 WNEDEGFFKVNQTLTGDFVLIARFKGTDGGAETGPEGV-LFRYCNHTCFLPEG 156
            W ++EGFFKVN  L GDF L+ RF G       G     LFRY N T  +  G
Sbjct:  373 WADEEGFFKVNVVLEGDFCLLCRFGGAHANKGLGETSTQLFRYVNTTVAMSTG 425
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1282.2270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LT96_ECTSI1.060e-2688.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JR06_9PHAE1.510e-2688.46FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S2E4S0_9STRA3.270e-950.00Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A1Z5JS78_FISSO6.080e-951.92Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5JJ85_FISSO2.270e-850.00C2 tensin-type domain-containing protein n=1 Tax=F... [more]
A0A1E7EJM2_9STRA4.390e-640.35C2 tensin-type domain-containing protein (Fragment... [more]
A0A7S3Q062_9STRA8.210e-640.82Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
B7FZW8_PHATC3.950e-545.28Formin like protein n=1 Tax=Phaeodactylum tricornu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1282contigL-elsbetiae_contig1282:27135..27290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue2.3e-22
Seed eggNOG ortholog2880.D8LT96
KEGG koko:K18080
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG2283@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815470.0716765-CDS-L-elsbetiae_contig1282:27134..272901622815470.0716765-CDS-L-elsbetiae_contig1282:27134..27290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1282 27135..27290 +
1691682912.8323078-CDS-L-elsbetiae_contig1282:27134..272901691682912.8323078-CDS-L-elsbetiae_contig1282:27134..27290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1282 27135..27290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1282.2270.1prot_L-elsbetiae_contig1282.2270.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1282 27135..27290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1282.2270.1

>prot_L-elsbetiae_contig1282.2270.1 ID=prot_L-elsbetiae_contig1282.2270.1|Name=mRNA_L-elsbetiae_contig1282.2270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
WNEDEGFFKVNQTLTGDFVLIARFKGTDGGAETGPEGVLFRYCNHTCFLP
EG
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mRNA from alignment at L-elsbetiae_contig1282:27135..27290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1282.2270.1 ID=mRNA_L-elsbetiae_contig1282.2270.1|Name=mRNA_L-elsbetiae_contig1282.2270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=156bp|location=Sequence derived from alignment at L-elsbetiae_contig1282:27135..27290+ (Laminarionema elsbetiae ELsaHSoW15)
TGGAACGAGGACGAGGGCTTCTTCAAGGTGAACCAGACGCTGACGGGGGA
CTTCGTGTTGATCGCGCGGTTCAAGGGGACGGACGGGGGTGCGGAGACGG
GGCCGGAGGGGGTGCTGTTTCGCTACTGCAACCACACGTGCTTTCTGCCG
GAGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1282:27135..27290+

>mRNA_L-elsbetiae_contig1282.2270.1 ID=mRNA_L-elsbetiae_contig1282.2270.1|Name=mRNA_L-elsbetiae_contig1282.2270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig1282:27135..27290+ (Laminarionema elsbetiae ELsaHSoW15)
TGGAACGAGGACGAGGGCTTCTTCAAGGTGAACCAGACGCTGACGGGGGA
CTTCGTGTTGATCGCGCGGTTCAAGGGGACGGACGGGGGTGCGGAGACGG
GGCCGGAGGGGGTGCTGTTTCGCTACTGCAACCACACGTGCTTTCTGCCG
GAGGGGTGGAACGAGGACGAGGGCTTCTTCAAGGTGAACCAGACGCTGAC
GGGGGACTTCGTGTTGATCGCGCGGTTCAAGGGGACGGACGGGGGTGCGG
AGACGGGGCCGGAGGGGGTGCTGTTTCGCTACTGCAACCACACGTGCTTT
CTGCCGGAGGGG
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