mRNA_L-elsbetiae_contig1282.2269.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1282.2269.1
Unique NamemRNA_L-elsbetiae_contig1282.2269.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1282.2269.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 8.680e-22
Identity = 52/72 (72.22%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:   10 IVDEVRRQTRPLDTPTKDACGKLTDAGFKAAVQGRMIEALTGERPNTRAIQNHAAAHGRRRTPYDANELLQR 225
            I+ E RRQ   +  P      +  DAGFK AVQG+MIEALTGERPNTRAIQNHAAAHGRRRTPYDANELLQR
Sbjct:    3 IISE-RRQEAEVKQPENKM--QYEDAGFKPAVQGKMIEALTGERPNTRAIQNHAAAHGRRRTPYDANELLQR 71
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BLAST of mRNA_L-elsbetiae_contig1282.2269.1 vs. uniprot
Match: A0A6H5JU34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU34_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.350e-20
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    4 KGIVDEVRRQTRPLDTPTKDACGKLTD--AGFKAAVQGRMIEALTGERPNTRAIQN 165
            KG+VDEVRRQT+PLDTPTKDAC KLT   AGFK AVQG+MI+ALTGERPN RAIQ+
Sbjct:  280 KGVVDEVRRQTKPLDTPTKDACVKLTGKYAGFKPAVQGKMIQALTGERPNARAIQD 335
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1282.2269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWW3_9PHAE8.680e-2272.22MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5JU34_9PHAE2.350e-2080.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1282contigL-elsbetiae_contig1282:11159..11624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size229
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815470.024483-CDS-L-elsbetiae_contig1282:11160..113031622815470.024483-CDS-L-elsbetiae_contig1282:11160..11303Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1282 11161..11303 -
1691682912.814573-CDS-L-elsbetiae_contig1282:11160..113031691682912.814573-CDS-L-elsbetiae_contig1282:11160..11303Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1282 11161..11303 -
1622815470.0342348-CDS-L-elsbetiae_contig1282:11542..116241622815470.0342348-CDS-L-elsbetiae_contig1282:11542..11624Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1282 11543..11624 -
1691682912.8233132-CDS-L-elsbetiae_contig1282:11542..116241691682912.8233132-CDS-L-elsbetiae_contig1282:11542..11624Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1282 11543..11624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1282.2269.1prot_L-elsbetiae_contig1282.2269.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1282 11161..11624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1282.2269.1

>prot_L-elsbetiae_contig1282.2269.1 ID=prot_L-elsbetiae_contig1282.2269.1|Name=mRNA_L-elsbetiae_contig1282.2269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
DKGIVDEVRRQTRPLDTPTKDACGKLTDAGFKAAVQGRMIEALTGERPNT
RAIQNHAAAHGRRRTPYDANELLQR
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mRNA from alignment at L-elsbetiae_contig1282:11159..11624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1282.2269.1 ID=mRNA_L-elsbetiae_contig1282.2269.1|Name=mRNA_L-elsbetiae_contig1282.2269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=466bp|location=Sequence derived from alignment at L-elsbetiae_contig1282:11159..11624- (Laminarionema elsbetiae ELsaHSoW15)
GACAAGGGCATTGTTGATGAAGTTCGTCGGCAGACTAGGCCTTTGGACAC
CCCGACGAAGGACGCGTGTGGAAAGCTCACAGGCGAGTATTGAGGCAGGA
TGTATGCGTGGTTTGTCTCCTTGCTGTTGGCGATAGAAGTACATGGTGAG
GGTGTGGGTGTGTCGACTCTGGTGTGGAGAGGGAGAAGCATGAAAGTAAA
CTGTTGGTATTGATTTTGCTATCTGGAGGCCATCGTTCACTTTCTGTCCT
GTCGACTGACTGTGCGGCATGAATCTATTGTCGTTGTGTGTGTGTGTGTG
TGTGTGTGTGTTTTTTTACAGACGCGGGCTTCAAGGCAGCGGTTCAAGGC
AGGATGATCGAAGCTCTCACCGGCGAACGCCCGAACACCCGAGCCATCCA
GAACCACGCTGCTGCGCATGGAAGGCGGAGAACGCCGTACGACGCTAACG
AGCTGCTGCAAAGGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1282:11159..11624-

>mRNA_L-elsbetiae_contig1282.2269.1 ID=mRNA_L-elsbetiae_contig1282.2269.1|Name=mRNA_L-elsbetiae_contig1282.2269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig1282:11159..11624- (Laminarionema elsbetiae ELsaHSoW15)
GACAAGGGCATTGTTGATGAAGTTCGTCGGCAGACTAGGCCTTTGGACAC
CCCGACGAAGGACGCGTGTGGAAAGCTCACAGGACAAGGGCATTGTTGAT
GAAGTTCGTCGGCAGACTAGGCCTTTGGACACCCCGACGAAGGACGCGTG
TGGAAAGCTCACAGACGCGGGCTTCAAGGCAGCGGTTCAAGGCAGGATGA
TCGAAGCTCTCACCGGCGAACGCCCGAACACCCGAGCCATCCAGAACCAC
GCTGCTGCGCATGGAAGGCGGAGAACGCCGTACGACGCTAACGAGCTGCT
GCAAAGGACGCGGGCTTCAAGGCAGCGGTTCAAGGCAGGATGATCGAAGC
TCTCACCGGCGAACGCCCGAACACCCGAGCCATCCAGAACCACGCTGCTG
CGCATGGAAGGCGGAGAACGCCGTACGACGCTAACGAGCTGCTGCAAAGG
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