mRNA_L-elsbetiae_contig1282.2268.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1282.2268.1
Unique NamemRNA_L-elsbetiae_contig1282.2268.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1282.2268.1 vs. uniprot
Match: D7G8P1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P1_ECTSI)

HSP 1 Score: 375 bits (962), Expect = 1.050e-129
Identity = 189/195 (96.92%), Postives = 190/195 (97.44%), Query Frame = 1 
Query:  133 DGGIVRGALLELPEGGELLAETVQGSSPLGGGFLCADVQCFVFHVQPSRRIMKKVCGAMTSLQGVFEFFEGAIEKQEDRAALRAAQLALPTVAMAGVDDVWFGQRFMAPIRFGLGMWPLRFMTIEMEAAAIFCGGANAVLEGDERLEALGKLEFLGELIVGVETVAVVMESRDGRVMRYIVCSMADGSHICSCRT 717
            DGGIVRGALLELPEGGELLAETVQGSSPLGGGFLCADVQCFVFHVQPS RIMKKVCGAMTSLQGVFEFFEGAIEKQEDRAALRAA+LALPTVAM GVDDVWFGQRFMAPIRFGL MWPLRFMTIEMEAAAIFCGGANAVLEGDERLEALGKLEFLGELIVGVETVAVVMESRD RVMRYIVCSMADGSHICSC T
Sbjct:    8 DGGIVRGALLELPEGGELLAETVQGSSPLGGGFLCADVQCFVFHVQPSGRIMKKVCGAMTSLQGVFEFFEGAIEKQEDRAALRAARLALPTVAMPGVDDVWFGQRFMAPIRFGLVMWPLRFMTIEMEAAAIFCGGANAVLEGDERLEALGKLEFLGELIVGVETVAVVMESRDCRVMRYIVCSMADGSHICSCTT 202
[Close]
BLAST of mRNA_L-elsbetiae_contig1282.2268.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 352 bits (903), Expect = 8.370e-109
Identity = 178/195 (91.28%), Postives = 183/195 (93.85%), Query Frame = 1 
Query:   85 FRRRLPEDARPAVGDRDGGIVRGALLELPEGGELLAETVQGSSPLGGGFLCADVQCFVFHVQPSRRIMKKVCGAMTSLQGVFEFFEGAIEKQEDRAALRAAQLALPTVAMAGVDDVWFGQRFMAPIRFGLGMWPLRFMTIEMEAAAIFCGGANAVLEGDERLEALGKLEFLGELIVGVETVAVVMESRDGRVMRY 669
            FR+RLPEDARP VGDR GGIVRGAL +LP+GG LLAETVQ SSPLGGGFLCADVQCFV HVQPSRRIMKKVCGAMTSLQGVFEFFEGAIEKQEDRA LRAA+LALP VAM GVDDVWFGQRFMAPIRFGLGMWPLRFMTIEMEAAAIFC G NAVLEG ERLEALGKLEFLGELIVGVETVAVVMESRDGRVMR+
Sbjct:  223 FRQRLPEDARPVVGDRHGGIVRGALRQLPKGGGLLAETVQRSSPLGGGFLCADVQCFVVHVQPSRRIMKKVCGAMTSLQGVFEFFEGAIEKQEDRALLRAARLALPAVAMPGVDDVWFGQRFMAPIRFGLGMWPLRFMTIEMEAAAIFCVGGNAVLEGGERLEALGKLEFLGELIVGVETVAVVMESRDGRVMRH 417
[Close]
BLAST of mRNA_L-elsbetiae_contig1282.2268.1 vs. uniprot
Match: A0A6H5JBU5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU5_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 1.220e-79
Identity = 128/151 (84.77%), Postives = 134/151 (88.74%), Query Frame = 1 
Query:  265 VQPSRRIMKKVCGAMTSLQGVFEFFEGAIEKQEDRAALRAAQLALPTVAMAGVDDVWFGQRFMAPIRFGLGMWPLRFMTIEMEAAAIFCGGANAVLEGDERLEALGKLEFLGELIVGVETVAVVMESRDGRVMRYIVCSMADGSHICSCRT 717
            V+   R+MKKVCGAMTSLQGVFEFFEGAIEKQEDRA LR A+LALP VAMAGVDDVWFG +FMA IRFGLGMWP R+MT+EMEAAAIFCGG  AVLEGDER EA  KLEFLGELIVGVETVA VMESR GRVMRYIVCSM DGSHICSCRT
Sbjct:  229 VEGINRVMKKVCGAMTSLQGVFEFFEGAIEKQEDRALLRTARLALPAVAMAGVDDVWFGDKFMALIRFGLGMWPFRYMTMEMEAAAIFCGGGGAVLEGDERFEAPSKLEFLGELIVGVETVAAVMESRYGRVMRYIVCSMQDGSHICSCRT 379
[Close]
BLAST of mRNA_L-elsbetiae_contig1282.2268.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 7.730e-35
Identity = 72/144 (50.00%), Postives = 93/144 (64.58%), Query Frame = 1 
Query:  289 KKVCGAMTSLQGVFEFFEGAIEKQEDRAALRAAQLALPTVAMAGVDDVWFGQRFMAPIRFGLGMWPLRFMTIEMEAAAIFCGG-ANAVLEGDERLEALGKLEFLGELIVGVETVAVVMESRDGRVMRYIVCSMADGSHICSCRT 717
            K+V  +  SL  VF+F   AIEKQ  RA LR+AQL LP+V+       WFG     P +F LG+W  +FM  E+   A FC   +NA+LEG  R +ALGK E++G ++V VETVAV++E+ DG   RYIV  M DGSH+CSCRT
Sbjct:  520 KRVLNSQASLVRVFKFLSDAIEKQAARAELRSAQLRLPSVSTPDTATYWFGAALTTPCKFALGVWAYKFMMDEVAMCATFCSSPSNALLEGASRDDALGKFEYIGMMVVNVETVAVIVENHDGTDKRYIVLGMTDGSHLCSCRT 663
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1282.2268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G8P1_ECTSI1.050e-12996.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWW3_9PHAE8.370e-10991.28MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5JBU5_9PHAE1.220e-7984.77SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JJG6_9PHAE7.730e-3550.00SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1282contigL-elsbetiae_contig1282:8828..10286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog2880.D8LU83
Preferred nameFHY3
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007602,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009639,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0104004,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.MULE transposase domain
EggNOG OGs2CMBY@1,2QPXR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_002460.1
Exons3
Model size718
Cds size717
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1282.2268.1prot_L-elsbetiae_contig1282.2268.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1282 8828..10286 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815469.952625-CDS-L-elsbetiae_contig1282:8827..92631622815469.952625-CDS-L-elsbetiae_contig1282:8827..9263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1282 8828..9263 -
1691682912.7729514-CDS-L-elsbetiae_contig1282:8827..92631691682912.7729514-CDS-L-elsbetiae_contig1282:8827..9263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1282 8828..9263 -
1622815469.9675775-CDS-L-elsbetiae_contig1282:9496..96951622815469.9675775-CDS-L-elsbetiae_contig1282:9496..9695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1282 9497..9695 -
1691682912.7899146-CDS-L-elsbetiae_contig1282:9496..96951691682912.7899146-CDS-L-elsbetiae_contig1282:9496..9695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1282 9497..9695 -
1622815469.9860785-CDS-L-elsbetiae_contig1282:10204..102861622815469.9860785-CDS-L-elsbetiae_contig1282:10204..10286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1282 10205..10286 -
1691682912.8057501-CDS-L-elsbetiae_contig1282:10204..102861691682912.8057501-CDS-L-elsbetiae_contig1282:10204..10286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1282 10205..10286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1282.2268.1

>prot_L-elsbetiae_contig1282.2268.1 ID=prot_L-elsbetiae_contig1282.2268.1|Name=mRNA_L-elsbetiae_contig1282.2268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=239bp
GEEAEVPLAPVEERQGKARRHPGPRFCCFRRRLPEDARPAVGDRDGGIVR
GALLELPEGGELLAETVQGSSPLGGGFLCADVQCFVFHVQPSRRIMKKVC
GAMTSLQGVFEFFEGAIEKQEDRAALRAAQLALPTVAMAGVDDVWFGQRF
MAPIRFGLGMWPLRFMTIEMEAAAIFCGGANAVLEGDERLEALGKLEFLG
ELIVGVETVAVVMESRDGRVMRYIVCSMADGSHICSCRT
back to top

mRNA from alignment at L-elsbetiae_contig1282:8828..10286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1282.2268.1 ID=mRNA_L-elsbetiae_contig1282.2268.1|Name=mRNA_L-elsbetiae_contig1282.2268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1459bp|location=Sequence derived from alignment at L-elsbetiae_contig1282:8828..10286- (Laminarionema elsbetiae ELsaHSoW15)
GGCGAAGAAGCTGAGGTGCCTTTGGCACCTGTGGAAGAACGTCAAGGAAA
AGCTCGGCGGCATCCTGGGCCAAGATTTTGCTGTGAGTACGATGTTGCGT
TTGTGCTCATGAGACTGGGAGTAACAGAGATGTGTGTATCGTCCCAGGAA
CAAACAGTGTCATTTGGCTCGGCGCCTGGTGTTGCCACACCCTGGGATTA
TATTGCCGGTCGTATGGGTGCCCGATCCAACAATTGGAGTGGCGTTTGTT
GTCGCATAAGTCCAACCACCCAGCCTCGGCGACTGTAACCCCCCATCGAA
CGATCTGCAAGCAACAAACCCCACCGGCCCATGGCGTGGCTACGACGGAT
AAGCAACCGCCTCCGTGGCCCTCTCGCGAAACAGCCTCGCCTCTGTACAG
CTTTAGCGTAGTACTGTTGTCACGCGACCTGTGACAGAACGAAAGTGCTT
TGCAGGGCAACTGCTTTGAACCCAATAGCCCCCACCCCCACCCCATCACC
CCCAACTTCAATGATACACAGTTGTCTCAGAAAATCCCTCCGCCGCTTCC
GCCGTCGATGCTGTCCTCACTGCCACCCACTAAACTCACAGGCTTTCGCC
GGCGACTTCCGGAAGATGCGCGGCCGGCTGTCGGAGACCGGGATGGAGGA
ATCGTTCGAGGAGCTCTGCTTGAACTTCCCGAAGGCGGAGAACTACTTGC
GGAAACTGTACAAGGATCGTCACCGCTGGGCGGCGGGTTTCTCTGTGCTG
ACGTTCAGTGTTTCGTCTTTCACGTCCAGCCGAGTCGAAGGTGGGCCCTC
GTGTATTTCAGCGTGTTTGTGCTTCGTGCGTTTTAGCTTGGCGGGGTCGT
AGGACAACCGCGCCGACGCGTGGGATCACCACGTGTGGAAACAACCCAAC
TCCTCAACTCCTATTCCACTGGCCTATGTAGTGTGCTGCAGCCGTTCATC
TACGCCTAGCAATGCAGTAAAACATCACCGTACCATGACCCGCACACGTG
ACACCATCGCCAGGTATCAACAGGATCATGAAGAAAGTTTGTGGCGCGAT
GACTTCTTTGCAAGGCGTCTTCGAGTTCTTCGAAGGAGCAATCGAGAAGC
AGGAAGACCGGGCAGCCCTTCGCGCCGCTCAGCTTGCCCTTCCTACTGTG
GCGATGGCGGGCGTTGACGACGTGTGGTTCGGGCAGAGGTTCATGGCGCC
GATCCGTTTCGGACTTGGGATGTGGCCGTTGCGGTTCATGACCATAGAGA
TGGAGGCCGCCGCCATTTTTTGTGGTGGTGCTAATGCAGTGCTTGAGGGG
GACGAGCGTTTGGAAGCACTAGGGAAACTAGAGTTCCTGGGCGAGTTGAT
TGTGGGCGTCGAGACGGTCGCCGTAGTCATGGAAAGCCGTGACGGCCGGG
TCATGCGGTACATAGTTTGCAGCATGGCGGATGGCAGTCACATCTGTTCG
TGCCGCACA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1282:8828..10286-

>mRNA_L-elsbetiae_contig1282.2268.1 ID=mRNA_L-elsbetiae_contig1282.2268.1|Name=mRNA_L-elsbetiae_contig1282.2268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1434bp|location=Sequence derived from alignment at L-elsbetiae_contig1282:8828..10286- (Laminarionema elsbetiae ELsaHSoW15)
GGCGAAGAAGCTGAGGTGCCTTTGGCACCTGTGGAAGAACGTCAAGGAAA
AGCTCGGCGGCATCCTGGGCCAAGATTTTGCTGGCGAAGAAGCTGAGGTG
CCTTTGGCACCTGTGGAAGAACGTCAAGGAAAAGCTCGGCGGCATCCTGG
GCCAAGATTTTGCTGCTTTCGCCGGCGACTTCCGGAAGATGCGCGGCCGG
CTGTCGGAGACCGGGATGGAGGAATCGTTCGAGGAGCTCTGCTTGAACTT
CCCGAAGGCGGAGAACTACTTGCGGAAACTGTACAAGGATCGTCACCGCT
GGGCGGCGGGTTTCTCTGTGCTGACGTTCAGTGTTTCGTCTTTCACGTCC
AGCCGAGTCGAAGGCTTTCGCCGGCGACTTCCGGAAGATGCGCGGCCGGC
TGTCGGAGACCGGGATGGAGGAATCGTTCGAGGAGCTCTGCTTGAACTTC
CCGAAGGCGGAGAACTACTTGCGGAAACTGTACAAGGATCGTCACCGCTG
GGCGGCGGGTTTCTCTGTGCTGACGTTCAGTGTTTCGTCTTTCACGTCCA
GCCGAGTCGAAGGATCATGAAGAAAGTTTGTGGCGCGATGACTTCTTTGC
AAGGCGTCTTCGAGTTCTTCGAAGGAGCAATCGAGAAGCAGGAAGACCGG
GCAGCCCTTCGCGCCGCTCAGCTTGCCCTTCCTACTGTGGCGATGGCGGG
CGTTGACGACGTGTGGTTCGGGCAGAGGTTCATGGCGCCGATCCGTTTCG
GACTTGGGATGTGGCCGTTGCGGTTCATGACCATAGAGATGGAGGCCGCC
GCCATTTTTTGTGGTGGTGCTAATGCAGTGCTTGAGGGGGACGAGCGTTT
GGAAGCACTAGGGAAACTAGAGTTCCTGGGCGAGTTGATTGTGGGCGTCG
AGACGGTCGCCGTAGTCATGGAAAGCCGTGACGGCCGGGTCATGCGGTAC
ATAGTTTGCAGCATGGCGGATGGCAGTCACATCTGTTCGTGCCGCACAGA
TCATGAAGAAAGTTTGTGGCGCGATGACTTCTTTGCAAGGCGTCTTCGAG
TTCTTCGAAGGAGCAATCGAGAAGCAGGAAGACCGGGCAGCCCTTCGCGC
CGCTCAGCTTGCCCTTCCTACTGTGGCGATGGCGGGCGTTGACGACGTGT
GGTTCGGGCAGAGGTTCATGGCGCCGATCCGTTTCGGACTTGGGATGTGG
CCGTTGCGGTTCATGACCATAGAGATGGAGGCCGCCGCCATTTTTTGTGG
TGGTGCTAATGCAGTGCTTGAGGGGGACGAGCGTTTGGAAGCACTAGGGA
AACTAGAGTTCCTGGGCGAGTTGATTGTGGGCGTCGAGACGGTCGCCGTA
GTCATGGAAAGCCGTGACGGCCGGGTCATGCGGTACATAGTTTGCAGCAT
GGCGGATGGCAGTCACATCTGTTCGTGCCGCACA
back to top