mRNA_L-elsbetiae_contig1282.2267.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1282.2267.1
Unique NamemRNA_L-elsbetiae_contig1282.2267.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1282.2267.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 1.570e-57
Identity = 109/118 (92.37%), Postives = 112/118 (94.92%), Query Frame = 1 
Query:    1 MVARVHSGTSRDDQVRPPTVVVGDTWQAIPENATIETTLQRVAQTGQSNQDRRLLYVEMLKKATAAVSSGVQLVPPETMRAIVQTFESSMNAAAMISSGQGAVLGNPQAVRQPAARSE 354
            MVA VHS  S+DDQVRPPTVVVGDTWQAIPE+ATIET LQRVAQTGQS QDRRLLYVEMLKKATAAVSSGVQLVPP+TMRAIVQTFESSMNAAAMISSGQGAVLGNPQAVRQPA RSE
Sbjct:  439 MVALVHSDASKDDQVRPPTVVVGDTWQAIPEDATIETRLQRVAQTGQSCQDRRLLYVEMLKKATAAVSSGVQLVPPDTMRAIVQTFESSMNAAAMISSGQGAVLGNPQAVRQPAVRSE 556
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BLAST of mRNA_L-elsbetiae_contig1282.2267.1 vs. uniprot
Match: A0A6H5JU34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU34_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.120e-34
Identity = 70/90 (77.78%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:  148 QDRRLLYVEMLKKATAAVSSGVQLVPPETMRAIVQTFESSMNAAAMISSGQGAVLGNPQAVRQPAARSEGTREKSSVEYGGAKNRRRAQA 417
            QDRRLLYV+M+K+  AAVS+GV+LVPP+T+RAIV+TFESS+NAAA ISSGQG VLGNPQAVRQPA RS+G R KSS+EYGGA+ RRRAQA
Sbjct:  334 QDRRLLYVDMVKRTNAAVSAGVELVPPDTLRAIVETFESSLNAAARISSGQGVVLGNPQAVRQPAKRSQGARAKSSLEYGGARARRRAQA 423
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BLAST of mRNA_L-elsbetiae_contig1282.2267.1 vs. uniprot
Match: A0A6H5JBU5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU5_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 6.200e-24
Identity = 55/75 (73.33%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    1 MVARVHSGTSRDDQVRPPTVVVGDTWQAIPENATIETTLQRVAQTGQSNQDRRLLYVEMLKKATAAVSSGVQLVP 225
            MVA V+S  S+DDQVRPPT +VGDTWQAIPENATIET LQRVAQTGQS+QDRRLL+VEMLKK T     G    P
Sbjct:  431 MVALVNSDASKDDQVRPPTAMVGDTWQAIPENATIETRLQRVAQTGQSSQDRRLLFVEMLKKTTCRELWGAACSP 505
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BLAST of mRNA_L-elsbetiae_contig1282.2267.1 vs. uniprot
Match: A0A6H5JCK5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK5_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.440e-19
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:   67 GDTWQAIPENATIETTLQRVAQTGQSNQDRRLLYVEMLKKATAAVSSGVQLVPPETMRAIVQTFESSMNAAAMISSGQGAVLGNPQAVRQPAARSEGTREKSSVEYG 387
            G  W A   N TIE++L ++ +TG + QDRR LYV+ LK+ATAAVS GV+ VPPE +RA+V+ F+  ++ A+ I S  G  + NP  VR P +R  G R+++S E G
Sbjct:   10 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGG 114
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BLAST of mRNA_L-elsbetiae_contig1282.2267.1 vs. uniprot
Match: D7FLA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA8_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 7.320e-18
Identity = 53/120 (44.17%), Postives = 74/120 (61.67%), Query Frame = 1 
Query:   67 GDTWQAIPENATIETTLQRVAQTGQSNQDRRLLYVEMLKKATAAVSSGVQLVPPETMRAIVQTFESSMNAAAMISSGQGAVLGNPQAVRQPAARSEGTREKSSVEYGGAKNRRRAQANHT 426
            G  W A   N TIE++L ++ +TG + QDRR LYV+ LK+ATAAVS GV+ VPPE +RA+VQ F+  ++ A+ I S  G  + NP  VR P +R  G R+++S + G      R   N T
Sbjct:  310 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVQQFKQGVHQASRIGSSAGLAVANPAVVRPPTSRDTGKRKRASRKGGAVVGAARRTYNQT 427
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BLAST of mRNA_L-elsbetiae_contig1282.2267.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.980e-17
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:   67 GDTWQAIPENATIETTLQRVAQTGQSNQDRRLLYVEMLKKATAAVSSGVQLVPPETMRAIVQTFESSMNAAAMISSGQGAVLGNPQAVRQPAARSEGTREKSSVEYG 387
            G  W A   N TIE++L ++ +TG + QDRR LYV+ LK+ATAAVS GV+ VPPE +RA+V+ F+  ++ A+ I S  G  + NP  VR P +R  G R+++S E G
Sbjct:  755 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGG 859
[Close]
BLAST of mRNA_L-elsbetiae_contig1282.2267.1 vs. uniprot
Match: A0A6H5JMX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX3_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 8.400e-17
Identity = 50/108 (46.30%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:   67 GDTWQAIPENATIETTLQRVAQTGQSNQDRRLLYVEMLKKATAAVSSGVQLVPPETMRAIVQTFES-SMNAAAMISSGQGAVLGNPQAVRQPAARSEGTREKSSVEYG 387
            G  W A   N TIE++L ++ +TG + QDRR LYV+ LK+ATAAVS GV+ VPPE +RA+V+ F+   ++ A+ I S  G  + NP  VR P +R  G R+++S E G
Sbjct:  109 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQXGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGG 214
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1282.2267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JWW3_9PHAE1.570e-5792.37MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5JU34_9PHAE1.120e-3477.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBU5_9PHAE6.200e-2473.33SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JCK5_9PHAE1.440e-1946.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FLA8_ECTSI7.320e-1844.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJG6_9PHAE1.980e-1746.73SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JMX3_9PHAE8.400e-1746.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1282contigL-elsbetiae_contig1282:8243..8671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_006690.1
Exons1
Model size429
Cds size429
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815469.9163868-CDS-L-elsbetiae_contig1282:8242..86711622815469.9163868-CDS-L-elsbetiae_contig1282:8242..8671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1282 8243..8671 -
1691682912.7609136-CDS-L-elsbetiae_contig1282:8242..86711691682912.7609136-CDS-L-elsbetiae_contig1282:8242..8671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1282 8243..8671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1282.2267.1prot_L-elsbetiae_contig1282.2267.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1282 8243..8671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1282.2267.1

>prot_L-elsbetiae_contig1282.2267.1 ID=prot_L-elsbetiae_contig1282.2267.1|Name=mRNA_L-elsbetiae_contig1282.2267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MVARVHSGTSRDDQVRPPTVVVGDTWQAIPENATIETTLQRVAQTGQSNQ
DRRLLYVEMLKKATAAVSSGVQLVPPETMRAIVQTFESSMNAAAMISSGQ
GAVLGNPQAVRQPAARSEGTREKSSVEYGGAKNRRRAQANHT*
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mRNA from alignment at L-elsbetiae_contig1282:8243..8671-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1282.2267.1 ID=mRNA_L-elsbetiae_contig1282.2267.1|Name=mRNA_L-elsbetiae_contig1282.2267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=429bp|location=Sequence derived from alignment at L-elsbetiae_contig1282:8243..8671- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTAGCGCGAGTCCACAGCGGCACGTCTAGAGACGACCAGGTACGCCC
TCCCACGGTGGTGGTGGGTGACACTTGGCAAGCAATCCCGGAGAATGCGA
CCATAGAGACCACGCTACAGAGGGTTGCGCAGACAGGGCAAAGTAATCAG
GACCGCCGGCTCCTTTATGTGGAGATGTTGAAGAAGGCCACCGCGGCCGT
GAGCTCTGGGGTGCAGCTTGTCCCCCCTGAGACTATGCGTGCCATCGTGC
AGACTTTCGAAAGTAGCATGAACGCCGCGGCGATGATTTCTTCGGGGCAG
GGGGCTGTACTGGGCAACCCACAAGCTGTGCGCCAACCAGCTGCTAGAAG
TGAGGGTACTAGAGAGAAGTCTAGCGTGGAGTACGGCGGGGCAAAGAATA
GGAGGCGAGCGCAGGCCAACCACACTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1282:8243..8671-

>mRNA_L-elsbetiae_contig1282.2267.1 ID=mRNA_L-elsbetiae_contig1282.2267.1|Name=mRNA_L-elsbetiae_contig1282.2267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig1282:8243..8671- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTAGCGCGAGTCCACAGCGGCACGTCTAGAGACGACCAGGTACGCCC
TCCCACGGTGGTGGTGGGTGACACTTGGCAAGCAATCCCGGAGAATGCGA
CCATAGAGACCACGCTACAGAGGGTTGCGCAGACAGGGCAAAGTAATCAG
GACCGCCGGCTCCTTTATGTGGAGATGTTGAAGAAGGCCACCGCGGCCGT
GAGCTCTGGGGTGCAGCTTGTCCCCCCTGAGACTATGCGTGCCATCGTGC
AGACTTTCGAAAGTAGCATGAACGCCGCGGCGATGATTTCTTCGGGGCAG
GGGGCTGTACTGGGCAACCCACAAGCTGTGCGCCAACCAGCTGCTAGAAG
TGAGGGTACTAGAGAGAAGTCTAGCGTGGAGTACGGCGGGGCAAAGAATA
GGAGGCGAGCGCAGGCCAACCACACTTGAATGGTAGCGCGAGTCCACAGC
GGCACGTCTAGAGACGACCAGGTACGCCCTCCCACGGTGGTGGTGGGTGA
CACTTGGCAAGCAATCCCGGAGAATGCGACCATAGAGACCACGCTACAGA
GGGTTGCGCAGACAGGGCAAAGTAATCAGGACCGCCGGCTCCTTTATGTG
GAGATGTTGAAGAAGGCCACCGCGGCCGTGAGCTCTGGGGTGCAGCTTGT
CCCCCCTGAGACTATGCGTGCCATCGTGCAGACTTTCGAAAGTAGCATGA
ACGCCGCGGCGATGATTTCTTCGGGGCAGGGGGCTGTACTGGGCAACCCA
CAAGCTGTGCGCCAACCAGCTGCTAGAAGTGAGGGTACTAGAGAGAAGTC
TAGCGTGGAGTACGGCGGGGCAAAGAATAGGAGGCGAGCGCAGGCCAACC
ACACTTGA
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