mRNA_L-elsbetiae_contig12819.2265.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12819.2265.1
Unique NamemRNA_L-elsbetiae_contig12819.2265.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12819.2265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12819contigL-elsbetiae_contig12819:2237..5359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size466
Cds size465
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12819.2265.1prot_L-elsbetiae_contig12819.2265.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12819 2237..5359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815469.7072852-CDS-L-elsbetiae_contig12819:2236..23971622815469.7072852-CDS-L-elsbetiae_contig12819:2236..2397Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12819 2237..2397 +
1691682912.637738-CDS-L-elsbetiae_contig12819:2236..23971691682912.637738-CDS-L-elsbetiae_contig12819:2236..2397Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12819 2237..2397 +
1622815469.7186792-CDS-L-elsbetiae_contig12819:4675..47831622815469.7186792-CDS-L-elsbetiae_contig12819:4675..4783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12819 4676..4783 +
1691682912.6479795-CDS-L-elsbetiae_contig12819:4675..47831691682912.6479795-CDS-L-elsbetiae_contig12819:4675..4783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12819 4676..4783 +
1622815469.7295403-CDS-L-elsbetiae_contig12819:5163..53591622815469.7295403-CDS-L-elsbetiae_contig12819:5163..5359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12819 5164..5359 +
1691682912.6581264-CDS-L-elsbetiae_contig12819:5163..53591691682912.6581264-CDS-L-elsbetiae_contig12819:5163..5359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12819 5164..5359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12819.2265.1

>prot_L-elsbetiae_contig12819.2265.1 ID=prot_L-elsbetiae_contig12819.2265.1|Name=mRNA_L-elsbetiae_contig12819.2265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=155bp
MFPQNQQVLQSYTGAASRLNMKHAGARRPGSAGRRVRRTRPIKFNESAGI
AEFRRMAKFSVTHHPSRGNTCYSGCFWGSNEDRFYFLAQSNTIALAHQVD
HWVYHVTQLKKRRAVKARREQAQTPSKLSTLKVGVVPKPAAAGSSTPSVP
KGASP
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mRNA from alignment at L-elsbetiae_contig12819:2237..5359+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12819.2265.1 ID=mRNA_L-elsbetiae_contig12819.2265.1|Name=mRNA_L-elsbetiae_contig12819.2265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3123bp|location=Sequence derived from alignment at L-elsbetiae_contig12819:2237..5359+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCCCCCAAAATCAGCAGGTACTCCAAAGCTACACAGGTGCAGCTAG
TCGATTGAACATGAAACACGCCGGAGCCCGCCGACCTGGATCTGCTGGTA
GACGAGTACGGCGTACTCGGCCAATCAAGTTCAACGAAAGCGCGGGCATT
GCGGAGTTCAGGCGAGGAGATAATAAATGTCGCATAGATAGTCTATTGTA
GTGTTAGCAACTCTTAGAATATAGTCTAGCTCGTTGCTTTCCGTGGTGCG
CGGTGTGGTTGTTCCCAGCTGGTTTAAACCTCCTCAGTGAGTCACACACA
TAGTGGACAATGTTTGTCTGGCTTGAGGCCGAAGGGGCAGGTAGTAGGTG
AACAGGTAGACCCTAGGCTAAGACAGTAACAGGTGACCAAGATGCTGATA
GTCGCGGGGGGCAGGTAGCCGCCGTGTTACAACGGGACATACATCGGGCT
GGAAGAAGACCGTCCTTCTTGAGGAGGGGATGCATTCGTCCGCGGAAGGT
AAAGTTCTGCTCTTCTGTATCGTATCCGATACATAGCTGCGAAACAACTG
CCCTGGGGTGTCTATGGTCCTGCTGCGGTATATAATTCTTGGTTATATCT
AAATATGTCAGTGTGTTATATAATTCTTGAGTATATCTTATGTCAGTGTG
TTCTCGCCCGATCTTTAACCGTAATTGCGTGCCCCCTAAGTTGCTGCGTT
TGTCGTCGTGCTTCAGTCTCTTAGCCTCTATAGCCTAAACTCTAGTCGCC
AGTACGTGTACCGCGTGCAATAACGTTATCGCTTGCCACTTCACCCCTTC
CTTGCTTGTAGCTCGTTTGCTAACGTATGACCCGTCATTTTGCACCCCGT
CAACTCAGACCATCCAAGCCAGAAGAGCGTTCGTGGTGCGTCCATGCTGG
GGCCCATGCGACGGGATCGTTCGCAATACTGGTTCACAATATACCCCCCT
CCCCCCTTAGCTCGTTTATCTATGCTTTCTATTTCTGTCACACTCCTGAA
TCCCGCAACTAACCCGGCACTTTTTCGCCCTTTTCATGGGCCGCCAGAGC
CGGGCCTTTCTCTTTCTAGATATGTAGAAGCATGTAGTTAGACTATCTTA
CTACTTCTGCTATGGTCAGTGTTGCCTGCCTTCTGTGCCTGAGGTTGCGT
GCTGGGGATATCATCTCCAGCTCTCTACATCGTCCCAATTCACCGTTTCT
AGAGCAATTCCACAGCAGTAGTACTATTTGCCATGGGAAGTATCTATTTG
GCAACAATCGAGACTACTACACTCGTACAAGCATTGCTCCAGCGTTTCGT
AGTGCAACGTGTGTATAGACTTTGATGTAGACTGTTACTACAGCAGTAGA
TCGTTTTTTGTCCGCCGCACATACATGCACTCTGAAGCGCGTTTTGGCGA
TCAAGGCCTCCTCGTCTCGGCAAGGTGCATTGGAGAGGTCATACAAATGT
GGGCGAGGCCATGCCACAGGGTAGGCCTTGGTACTGACGCAGAATGTTCA
TCATGACGGTCGTAGCTACAGGTACCTGGTTTAGAGCCCACATTTCTTCC
TCCAGAGGACAATAAGCAACGCCGCCCCGCCGTAGCGAGCTAAAGCCAGC
TACGTTTATAGCGAGGGGGATCGGTTTGTTGTGTTTCTTGGTGCATCGAT
TTCTAGTCCGTGACCATCCGGGGACGTCGAGTTGACTCGTAAGAGTGGGC
GAGACGAAACTGGCTCTGAGTACACGTTCACATTTCGATCGGATACCCGC
TTTATCGGCATTGCAACACAAACCACGAGGAGGCCTTGGTACACTTGCTT
GCTTGGTTGAAGACCGCCCGCCGCTCGCTCCGCGTCTATTTGCTAACACC
ATCTCTCCTCCTGCGCCTCCGTCCCTCCCCTTGTCTGTCCCATGGTGTCT
CTCCGTGCTCCCCTTGCTCTCTATCCGCTCTGTTCCCCCCCCTCCTTACC
CCACTTAGCACGTCCGTCCCTGCTGTCTTGTCTGTCCCTTCGTTGCCCAT
CGAGTGGTTTCGCGCATAAAAACTTATTAAGTGCTTACCACGCATAGTGA
TGTGCTGACTGCCCTGTTTCGCCCCGTTCGTTCCGCTGTTTCATTCGTTG
CACCTAACTAAAAGGCAACCCATCAATCATGTTTCGGTGGCTGGACTACA
ACATGCTTTGCCGCGCCGCTTTTTGTCCACGCCTTGTCTCCCACCGGTCC
ATATCTGTCGTCGTTTTCCTATACTTTTTGCTTACTCCAACTGCCTCGAT
TGCCCTTGCAATCTAGAAGTAACCTCTTGCATTTCCTATCGTTGAGATTA
TCTTCTTTGCCTTAGGTTACGGTACATGCTATTGCTCAACTACCACGCGT
GCTTCCCACGCGTGTTTAGTTGACCCCTCCACCCCCCCTTCGCTTTCCCC
CGCTGTTCTTGTCATCCACCTAACAAATCCTGCGCGCAGGAGAATGGCCA
AATTTTCCGTGACGCATCATCCGAGCAGAGGCAACACCTGCTATTCAGGA
TGTTTCTGGGGTTCGAACGAAGACCGCTTTTATTTCCTCGCCCAGAGGTT
AGTGGTCAGTGCCAGCTTCAAATGTGTGAAATTTGTCGTTCATTTCTCCT
AACACCATCCATGTGCGTTGCATAGCTAGACAAAGCGCGGCAGGAACTAT
TCGAAACAAGCACGTGTTGGGTTGGGACGTACATAGAGTTGCACGGAGAT
GGGACGGCTGGTATTTGTTGTGCAATGCAGTTTTTACCGGATGTCAGCCT
GTTCAAAAATCGAAGATACACCTGCGTACATTAGATATCTAGGTATATGT
ACACAAATCCACATGCGTACTGAAAGAGGAACCATGTCCTTCCGAACCGA
CTGATGCACAGACCACCAACATTGCGCTGGCGTATGTGATGATAACCCCC
CCACGTCTTGCTTCATGATATCGCCAGCAATACGATTGCGCTCGCCCATC
AAGTCGACCACTGGGTCTACCACGTCACTCAACTGAAGAAGAGGCGTGCC
GTGAAGGCTAGACGCGAACAGGCCCAGACCCCATCGAAGCTATCCACGCT
TAAGGTTGGAGTGGTACCCAAGCCTGCTGCGGCCGGATCCTCCACGCCTT
CCGTGCCGAAGGGTGCCTCACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12819:2237..5359+

>mRNA_L-elsbetiae_contig12819.2265.1 ID=mRNA_L-elsbetiae_contig12819.2265.1|Name=mRNA_L-elsbetiae_contig12819.2265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig12819:2237..5359+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCCCCCAAAATCAGCAGGTACTCCAAAGCTACACAGGTGCAGCTAG
TCGATTGAACATGAAACACGCCGGAGCCCGCCGACCTGGATCTGCTGGTA
GACGAGTACGGCGTACTCGGCCAATCAAGTTCAACGAAAGCGCGGGCATT
GCGGAGTTCAGATGTTCCCCCAAAATCAGCAGGTACTCCAAAGCTACACA
GGTGCAGCTAGTCGATTGAACATGAAACACGCCGGAGCCCGCCGACCTGG
ATCTGCTGGTAGACGAGTACGGCGTACTCGGCCAATCAAGTTCAACGAAA
GCGCGGGCATTGCGGAGTTCAGGAGAATGGCCAAATTTTCCGTGACGCAT
CATCCGAGCAGAGGCAACACCTGCTATTCAGGATGTTTCTGGGGTTCGAA
CGAAGACCGCTTTTATTTCCTCGCCCAGAGGAGAATGGCCAAATTTTCCG
TGACGCATCATCCGAGCAGAGGCAACACCTGCTATTCAGGATGTTTCTGG
GGTTCGAACGAAGACCGCTTTTATTTCCTCGCCCAGAGCAATACGATTGC
GCTCGCCCATCAAGTCGACCACTGGGTCTACCACGTCACTCAACTGAAGA
AGAGGCGTGCCGTGAAGGCTAGACGCGAACAGGCCCAGACCCCATCGAAG
CTATCCACGCTTAAGGTTGGAGTGGTACCCAAGCCTGCTGCGGCCGGATC
CTCCACGCCTTCCGTGCCGAAGGGTGCCTCACCGCAATACGATTGCGCTC
GCCCATCAAGTCGACCACTGGGTCTACCACGTCACTCAACTGAAGAAGAG
GCGTGCCGTGAAGGCTAGACGCGAACAGGCCCAGACCCCATCGAAGCTAT
CCACGCTTAAGGTTGGAGTGGTACCCAAGCCTGCTGCGGCCGGATCCTCC
ACGCCTTCCGTGCCGAAGGGTGCCTCACCG
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